Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 4.1e-66 254.6 129 100.0
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.2e-65 253.1 129 99.2
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 2.2e-59 232.3 130 91.5
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.5e-52 209.5 121 89.3
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 4.1e-50 201.4 122 85.2
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 9.1e-50 200.3 123 84.6
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 6.1e-46 187.6 108 88.0
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.8e-29 132.9 129 57.4
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 9.8e-28 127.1 125 60.8
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 1.1e-26 123.6 114 60.5
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 2.4e-26 122.5 119 57.1
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 7.0e-26 120.9 112 56.2
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 2.0e-25 119.4 128 52.3
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.3e-23 111.7 121 53.7
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 5.6e-23 111.3 124 54.0
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.2e-22 110.2 127 50.4
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.2e-22 110.2 126 51.6
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.6e-22 109.8 124 52.4
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 2.1e-22 109.4 109 53.2
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.8e-22 109.0 124 52.4
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.8e-22 109.0 124 53.2
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.8e-22 109.0 124 53.2
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.6e-22 108.6 122 50.8
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 3.6e-22 108.6 122 51.6
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 4.7e-22 108.2 121 51.2
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 8.0e-22 107.5 111 55.9
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 8.0e-22 107.5 122 52.5
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 8.0e-22 107.5 124 52.4
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.0e-21 107.1 126 50.8
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 2.3e-21 105.9 116 54.3
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.3e-21 105.9 123 48.8
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.3e-21 105.9 123 48.8
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.0e-21 105.5 123 52.0
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 4.0e-21 105.1 123 48.8
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 4.0e-21 105.1 123 52.0
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 6.8e-21 104.4 106 53.8
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 6.8e-21 104.4 132 47.7
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 6.8e-21 104.4 126 50.0
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 8.9e-21 104.0 114 52.6
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.2e-20 103.6 113 52.2
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 1.5e-20 103.2 74 68.9
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 2.0e-20 102.8 110 50.0
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 2.0e-20 102.8 119 50.4
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 2.6e-20 102.4 129 50.4
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 3.4e-20 102.1 120 48.3
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.4e-20 101.7 106 52.8
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.4e-20 101.7 125 46.4
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 7.5e-20 100.9 116 48.3
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 7.5e-20 100.9 125 43.2
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 9.8e-20 100.5 123 50.4
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 9.8e-20 100.5 123 50.4
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 9.8e-20 100.5 109 51.4
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 1.3e-19 100.1 134 47.8
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.7e-19 99.8 135 48.9
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.7e-19 99.8 123 49.6
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 1.7e-19 99.8 108 50.0
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 2.2e-19 99.4 120 45.0
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.9e-19 99.0 123 49.6
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 2.9e-19 99.0 120 50.0
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 4.9e-19 98.2 107 52.3
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.9e-19 98.2 128 49.2
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.8e-18 96.3 124 46.0
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 7.0e-18 94.4 137 46.0
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 7.0e-18 94.4 127 44.9
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 7.0e-18 94.4 121 49.6
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.2e-17 93.6 114 46.5
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 1.2e-17 93.6 123 43.1
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 1.2e-17 93.6 125 43.2
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.2e-17 93.6 121 48.8
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 1.6e-17 93.2 121 48.8
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 2.7e-17 92.4 111 49.5
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 4.6e-17 91.7 109 61.5
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 5.9e-17 91.3 133 44.4
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.0e-16 90.5 133 44.4
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.0e-16 90.5 129 43.4
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.3e-16 90.1 111 54.1
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.7e-16 89.7 121 45.5
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.3e-16 89.4 124 44.4
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 3.0e-16 89.0 128 43.0
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.9e-16 88.6 111 53.2
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 3.9e-16 88.6 127 44.1
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 3.9e-16 88.6 114 48.2
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.0e-16 88.2 112 48.2
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 5.0e-16 88.2 118 47.5
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 6.6e-16 87.8 112 46.4
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 8.6e-16 87.4 127 47.2
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 1.1e-15 87.0 111 47.7
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 1.1e-15 87.0 116 46.6
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.5e-15 86.7 119 41.2
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 1.5e-15 86.7 122 44.3
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 1.9e-15 86.3 116 49.1
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.9e-15 86.3 116 46.6
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 1.9e-15 86.3 112 49.1
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 2.5e-15 85.9 118 46.6
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 4.3e-15 85.1 106 47.2
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.3e-15 85.1 111 47.7
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 4.3e-15 85.1 148 42.6
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 4.3e-15 85.1 115 47.0
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 5.6e-15 84.7 139 42.4
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 5.6e-15 84.7 132 41.7
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 9.5e-15 84.0 127 44.1
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 9.5e-15 84.0 107 47.7
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 9.5e-15 84.0 118 48.3
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 9.5e-15 84.0 116 46.6
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 4.7e-14 81.6 121 45.5
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.7e-14 81.6 111 43.2
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 6.2e-14 81.3 116 47.4
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 6.2e-14 81.3 119 45.4
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 1.1e-13 80.5 120 46.7
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 1.1e-13 80.5 111 45.0
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 1.1e-13 80.5 108 41.7
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 2.3e-13 79.3 118 44.9
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 2.3e-13 79.3 115 45.2
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 2.3e-13 79.3 136 41.2
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 2.3e-13 79.3 128 43.0
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 2.3e-13 79.3 133 42.1
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 4.0e-13 78.6 119 46.2
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 4.0e-13 78.6 107 48.6
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.2e-13 78.2 107 46.7
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 8.9e-13 77.4 138 38.4
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 8.9e-13 77.4 90 53.3
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 8.9e-13 77.4 121 43.0
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.2e-12 77.0 119 45.4
Haze_21743 Corylus avellana HOM05D001798 ORTHO05D005040 2.6e-12 75.9 106 46.2
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 5.8e-12 74.7 131 42.0
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 5.8e-12 74.7 131 42.0
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 5.8e-12 74.7 115 43.5
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 7.5e-12 74.3 109 43.1
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.7e-11 73.2 115 43.5
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.7e-11 73.2 115 43.5
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 1.7e-11 73.2 119 43.7
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.2e-11 72.8 132 40.2
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 3.7e-11 72.0 120 40.8
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 4.9e-11 71.6 115 42.6
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 4.9e-11 71.6 115 42.6
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 4.9e-11 71.6 115 42.6
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 4.9e-11 71.6 141 36.9
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.1e-10 70.5 123 40.7
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.1e-10 70.5 130 39.2
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.1e-10 70.5 130 42.3
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 2.4e-10 69.3 116 43.1
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.4e-10 69.3 127 40.2
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.4e-10 69.3 97 49.5
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 3.2e-10 68.9 139 37.4
Cfa013272 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.2e-10 68.9 104 46.2
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.6e-09 66.6 126 36.5
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 2.7e-09 65.9 73 50.7
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 2.7e-09 65.9 73 50.7
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.7e-09 65.9 62 56.5
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 2.7e-09 65.9 115 38.3
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 3.5e-09 65.5 136 41.2
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 4.6e-09 65.1 113 40.7
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 7.8e-09 64.3 118 39.8
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 1.0e-08 63.9 131 38.2
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 1.3e-08 63.5 127 40.2
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 1.3e-08 63.5 114 43.9
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 5.0e-08 61.6 131 35.1
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 6.6e-08 61.2 148 31.1
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 6.6e-08 61.2 96 40.6
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 7.3e-07 57.8 104 44.2
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 7.3e-07 57.8 89 40.4
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 9.5e-07 57.4 156 29.5
Lalb_Chr08g0243531 Lupinus albus HOM05D021496 ORTHO05D022761 1.6e-06 56.6 119 34.5
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 2.1e-06 56.2 115 33.0
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 2.1e-06 56.2 118 35.6
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 2.8e-06 55.8 156 28.8
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 3.6e-06 55.5 95 41.1
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.6e-06 55.5 81 49.4
Glyma.06G076800 Glycine max HOM05D021496 ORTHO05D022761 6.2e-06 54.7 104 38.5
Atru.chr7.2644 Acer truncatum HOM05D001798 ORTHO05D005040 8.1e-06 54.3 150 34.0


User provided reference genes

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