Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 6.3e-254 880.9 680 100.0
Cfa013242 Carpinus fangiana HOM05D063909 ORTHO05D004564 2.6e-199 699.5 623 92.3
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.4e-99 368.2 685 50.8
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 3.5e-79 300.4 565 55.8
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 5.2e-46 190.3 740 38.6
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 4.2e-32 144.1 161 65.2
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 9.4e-32 142.9 126 63.5
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 3.6e-31 141.0 660 34.7
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 5.2e-30 137.1 223 44.8
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 5.2e-30 137.1 693 38.4
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 7.5e-29 133.3 222 46.8
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.3e-28 132.5 679 31.5
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 2.8e-28 131.3 124 59.7
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 2.4e-27 128.3 160 49.4
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 3.1e-27 127.9 127 60.6
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 1.7e-25 122.1 122 59.0
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 3.8e-25 120.9 126 56.3
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.5e-24 119.0 122 60.7
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 3.2e-24 117.9 211 43.6
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 3.6e-23 114.4 122 55.7
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 6.1e-23 113.6 124 54.8
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 8.0e-23 113.2 196 43.9
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 4.0e-22 110.9 222 41.0
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 4.0e-22 110.9 124 54.0
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 8.8e-22 109.8 649 35.6
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 1.5e-21 109.0 124 51.6
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 1.5e-21 109.0 696 39.9
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 3.4e-21 107.8 124 54.8
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.3e-20 105.9 126 57.1
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.3e-20 105.9 126 57.1
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.7e-20 105.5 126 57.1
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 1.7e-20 105.5 272 41.2
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 4.9e-20 104.0 123 56.1
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 8.3e-20 103.2 207 41.5
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 1.8e-19 102.1 121 55.4
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 1.8e-19 102.1 238 37.4
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 2.4e-19 101.7 84 67.9
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 3.1e-19 101.3 126 55.6
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 4.1e-19 100.9 223 45.7
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 9.2e-19 99.8 633 35.9
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 4.5e-18 97.4 122 46.7
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 4.5e-18 97.4 126 51.6
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.9e-18 97.1 190 53.2
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.3e-17 95.9 118 53.4
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.3e-17 95.1 804 33.2
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.1e-16 92.8 107 52.3
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.1e-16 92.8 107 52.3
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 4.3e-16 90.9 116 48.3
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 9.5e-16 89.7 479 46.6
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 1.6e-15 89.0 112 50.0
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.6e-15 89.0 112 50.0
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 1.6e-15 89.0 112 50.0
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 4.7e-15 87.4 180 38.9
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 6.1e-15 87.0 111 51.4
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 6.1e-15 87.0 201 38.3
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 6.1e-15 87.0 222 36.5
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.4e-14 85.9 121 45.5
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 3.0e-14 84.7 221 45.7
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 6.8e-14 83.6 124 46.8
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.2e-13 82.8 116 49.1
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.6e-13 81.6 202 34.2
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 4.4e-13 80.9 77 58.4
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 7.5e-13 80.1 126 44.4
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 7.5e-13 80.1 73 58.9
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 1.3e-12 79.3 99 51.5
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 1.7e-12 79.0 123 46.3
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 2.2e-12 78.6 121 46.3
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.9e-12 77.4 126 46.0
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 6.4e-12 77.0 212 38.2
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 6.4e-12 77.0 232 38.8
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 8.3e-12 76.6 205 39.0
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.1e-11 76.3 126 44.4
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.1e-11 76.3 126 44.4
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.1e-11 76.3 73 60.3
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.2e-11 74.7 111 45.9
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 5.4e-11 73.9 118 44.1
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 9.2e-11 73.2 88 52.3
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.2e-10 72.8 65 56.9
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.7e-10 71.6 172 37.8
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 2.7e-10 71.6 67 59.7
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 3.5e-10 71.2 67 55.2
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.6e-10 70.9 126 41.3
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.0e-09 69.7 127 43.3
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.0e-09 69.7 99 48.5
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 1.0e-09 69.7 67 58.2
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.7e-09 68.9 190 36.3
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.7e-09 68.9 122 41.0
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 1.7e-09 68.9 226 33.6
vmacro00641 Vaccinium macrocarpon HOM05D009134 ORTHO05D011284 1.7e-09 68.9 284 32.0
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.0e-09 68.2 238 43.3
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 3.9e-09 67.8 78 48.7
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 5.0e-09 67.4 66 57.6
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 6.6e-09 67.0 72 52.8
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.1e-08 66.2 111 40.5
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.5e-08 65.9 61 55.7
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.9e-08 65.5 607 32.8
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 1.9e-08 65.5 101 45.5
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 5.6e-08 63.9 603 31.0
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 7.3e-08 63.5 221 33.0
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.3e-08 63.5 73 52.1
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.2e-07 62.8 178 34.8
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.6e-07 61.2 99 44.4
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 3.6e-07 61.2 173 33.5
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 6.2e-07 60.5 72 45.8
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 3.1e-06 58.2 647 27.7
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 4.0e-06 57.8 116 35.3
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 4.0e-06 57.8 71 46.5
TAR626G1323 Trochodendron aralioides HOM05D004041 ORTHO05D004564 4.0e-06 57.8 104 46.2


User provided reference genes

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