Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 0.0e+00 1201.0 624 100.0
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 1094.3 609 92.8
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 1.4e-308 1062.4 609 89.5
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 8.8e-308 1059.7 609 89.5
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 2.2e-306 1055.0 609 88.2
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 5.9e-304 1047.0 607 88.5
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 5.5e-302 1040.4 609 88.0
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 2.1e-301 1038.5 609 87.8
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 2.1e-301 1038.5 607 87.5
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 8.0e-301 1036.6 609 86.7
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 3.0e-300 1034.6 607 87.1
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 5.2e-300 1033.9 609 87.4
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 6.7e-300 1033.5 609 88.0
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 7.5e-299 1030.0 609 87.7
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 1.7e-298 1028.9 609 86.2
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 2.2e-298 1028.5 609 87.5
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 8.2e-298 1026.5 609 87.4
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 8.2e-298 1026.5 609 86.0
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 8.2e-298 1026.5 609 87.0
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 1.8e-297 1025.4 607 87.6
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 5.3e-297 1023.8 609 85.9
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 9.1e-297 1023.1 609 85.4
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 3.5e-296 1021.1 609 85.7
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 4.5e-296 1020.8 609 85.2
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 2.2e-295 1018.5 609 85.4
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 2.2e-295 1018.5 609 85.1
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 2.9e-295 1018.1 609 85.4
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 5.0e-295 1017.3 609 85.2
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 9.4e-294 1013.1 609 84.7
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.7e-293 1011.5 609 84.9
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 2.7e-293 1011.5 609 85.7
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 2.7e-293 1011.5 614 85.5
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 2.3e-292 1008.4 610 84.9
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 3.0e-292 1008.1 609 85.4
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 5.2e-292 1007.3 609 84.4
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 4.4e-291 1004.2 609 83.9
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 5.7e-291 1003.8 610 85.4
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 2.2e-290 1001.9 615 85.4
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 6.3e-290 1000.3 609 85.2
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 6.3e-290 1000.3 639 81.4
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 8.3e-290 1000.0 609 84.1
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 2.3e-287 991.9 609 83.3
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 6.8e-284 980.3 610 82.8
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 5.4e-281 970.7 609 82.3
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 1.3e-279 966.1 609 82.4
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 1.7e-279 965.7 609 81.3
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 8.6e-279 963.4 610 82.5
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 1.6e-277 959.1 609 81.0
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 2.1e-277 958.7 618 78.8
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 9.8e-275 949.9 717 71.0
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 1.3e-274 949.5 609 80.6
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 4.1e-273 944.5 610 80.5
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 1.6e-269 932.6 614 79.0
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 2.8e-269 931.8 609 78.8
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 3.6e-269 931.4 614 79.2
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 4.7e-269 931.0 610 79.7
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 4.0e-268 927.9 613 77.3
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 6.8e-268 927.2 659 74.7
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 2.2e-266 922.2 609 80.1
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 4.9e-266 921.0 609 78.7
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 2.1e-264 915.6 614 78.0
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 1.3e-263 912.9 613 77.7
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 3.9e-263 911.4 609 78.0
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 8.6e-263 910.2 614 78.2
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 2.8e-261 905.2 614 77.5
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 2.8e-261 905.2 613 76.7
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 4.0e-260 901.4 615 78.0
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 6.8e-260 900.6 614 77.0
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 6.8e-260 900.6 610 77.7
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 8.9e-260 900.2 609 77.7
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 1.2e-259 899.8 615 77.6
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 5.8e-259 897.5 614 77.4
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 5.8e-259 897.5 614 77.4
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 9.9e-259 896.7 611 76.1
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 8.3e-258 893.6 614 77.0
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 8.3e-258 893.6 614 77.0
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 3.2e-257 891.7 642 75.1
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 2.7e-256 888.6 613 75.5
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 6.8e-252 874.0 609 75.9
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 6.2e-245 850.9 609 71.9
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 1.1e-244 850.1 609 70.9
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 3.4e-243 845.1 562 78.8
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 7.3e-238 827.4 616 71.8
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 1.6e-232 809.7 613 69.0
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 2.1e-232 809.3 558 77.8
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 2.1e-229 799.3 610 69.7
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.7e-189 666.8 575 65.9
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 9.4e-185 651.0 627 57.9
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 9.7e-182 641.0 392 83.9
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 1.0e-178 630.9 639 55.6
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 2.1e-176 623.2 613 59.7
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 1.4e-175 620.5 364 85.4
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 1.7e-170 603.6 614 54.9
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 1.4e-156 557.4 440 66.8
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 6.0e-131 472.2 283 86.9
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 6.9e-127 458.8 640 41.9
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 3.4e-126 456.4 619 43.1
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 7.6e-126 455.3 265 87.5
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 2.4e-111 407.1 383 57.7
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.3e-109 401.4 239 86.2
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.6e-107 394.4 221 89.1
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.9e-93 347.1 203 88.2
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.2e-91 341.7 203 87.7
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 1.5e-68 265.0 226 61.9
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 3.2e-60 237.3 158 75.3
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 1.3e-37 162.2 116 75.9
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 3.3e-36 157.5 105 74.3
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 3.6e-27 127.5 101 73.3
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 3.6e-27 127.5 101 73.3
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 4.1e-23 114.0 129 58.1
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 9.6e-20 102.8 181 39.8
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 1.6e-19 102.1 383 29.2
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.4e-17 94.4 123 53.7
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 8.4e-16 89.7 88 53.4
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 1.1e-15 89.4 204 34.3
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 1.9e-15 88.6 105 49.5
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.9e-13 80.9 74 60.8
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.8e-11 74.7 79 62.0
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 1.5e-09 68.9 105 46.7
Medtr3g110010 Medicago truncatula HOM05D001346 ORTHO05D001205 1.4e-07 62.4 137 33.6
Psat5g042320 Pisum sativum HOM05D000051 ORTHO05D000015 1.4e-07 62.4 135 32.6


User provided reference genes

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