Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21525 Corylus avellana HOM05D004884 ORTHO05D005873 2.6e-98 362.1 184 100.0
Cfa013154 Carpinus fangiana HOM05D004884 ORTHO05D005873 5.3e-43 178.3 176 60.8
QL02p021869 Quercus lobata HOM05D004884 ORTHO05D005873 1.3e-41 173.7 175 60.0
CiPaw.08G011500 Carya illinoinensis HOM05D004884 ORTHO05D005873 1.7e-41 173.3 175 59.4
Sopen11g004140 Solanum pennellii HOM05D004884 ORTHO05D005873 4.9e-41 171.8 138 65.2
Gorai.001G184900 Gossypium raimondii HOM05D004884 ORTHO05D005873 9.3e-40 167.5 138 64.5
ClCG05G016940 Citrullus lanatus HOM05D004884 ORTHO05D005873 2.1e-39 166.4 176 56.8
MELO3C003694.2 Cucumis melo HOM05D004884 ORTHO05D005873 2.1e-39 166.4 176 56.8
CsaV3_3G046450 Cucumis sativus L. HOM05D004884 ORTHO05D005873 6.0e-39 164.9 176 56.2
Sed0027624 Sechium edule HOM05D004884 ORTHO05D005873 7.9e-39 164.5 176 55.7
Gohir.D07G161600 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.3e-38 163.7 138 63.8
MSTRG.9432 Avicennia marina HOM05D004884 ORTHO05D005873 6.7e-38 161.4 180 53.3
PGR031G3479 Punica granatum HOM05D004884 ORTHO05D005873 6.7e-38 161.4 176 53.4
EL10Ac2g04219 Beta vulgaris HOM05D004884 ORTHO05D005873 1.5e-37 160.2 176 51.1
CAN.G407.94 Capsicum annuum HOM05D004884 ORTHO05D005873 1.5e-37 160.2 176 53.4
Migut.D01065 Erythranthe guttata HOM05D004884 ORTHO05D005873 2.5e-37 159.5 176 54.0
Glyma.07G031300 Glycine max HOM05D004884 ORTHO05D005873 2.5e-37 159.5 176 52.8
Cc04_g04240 Coffea canephora HOM05D004884 ORTHO05D005873 3.3e-37 159.1 176 53.4
MBI04_g07835_MAGBIO Magnolia biondii HOM05D004884 ORTHO05D005873 4.3e-37 158.7 174 53.4
SalBow3G1656 Salvia bowleyana HOM05D004884 ORTHO05D005873 4.3e-37 158.7 176 53.4
Sopen03g035510 Solanum pennellii HOM05D004884 ORTHO05D005873 4.3e-37 158.7 176 53.4
ECA240G3509 Erigeron canadensis HOM05D004884 ORTHO05D005873 5.7e-37 158.3 176 53.4
PSO455G0277 Papaver somniferum HOM05D004884 ORTHO05D005873 5.7e-37 158.3 176 52.3
Prupe.3G084300 Prunus persica HOM05D004884 ORTHO05D005873 5.7e-37 158.3 176 52.8
Solyc03g116600.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 5.7e-37 158.3 176 53.4
PGSC0003DMG400000635 Solanum tuberosum HOM05D004884 ORTHO05D005873 7.4e-37 157.9 176 53.4
AUR62012381 Chenopodium quinoa HOM05D004884 ORTHO05D005873 9.6e-37 157.5 176 51.1
Dinv30589 Davidia involucrata HOM05D004884 ORTHO05D005873 9.6e-37 157.5 174 53.4
Lsat_1_v5_gn_1_2440 Lactuca sativa HOM05D004884 ORTHO05D005873 9.6e-37 157.5 177 52.5
Oeu045160.1 Olea europaea HOM05D004884 ORTHO05D005873 9.6e-37 157.5 176 52.8
THA.LOC104808231 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 9.6e-37 157.5 176 52.3
Gohir.D10G076700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.3e-36 157.1 176 52.8
MD17G1208900 Malus domestica HOM05D004884 ORTHO05D005873 1.3e-36 157.1 176 52.3
PSO170G2441 Papaver somniferum HOM05D004884 ORTHO05D005873 1.3e-36 157.1 176 51.7
SGA_v2.0_scaffold117G32369 Striga asiatica HOM05D004884 ORTHO05D005873 1.3e-36 157.1 176 53.4
Eucgr.F02527 Eucalyptus grandis HOM05D004884 ORTHO05D005873 1.6e-36 156.8 176 52.8
Glyma.08G211500 Glycine max HOM05D004884 ORTHO05D005873 1.6e-36 156.8 176 52.3
HanXRQChr02g0046821 Helianthus annuus HOM05D004884 ORTHO05D005873 1.6e-36 156.8 176 52.8
Oeu052257.1 Olea europaea HOM05D004884 ORTHO05D005873 1.6e-36 156.8 176 52.8
THA.LOC104812503 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 1.6e-36 156.8 176 51.7
VMungo0331G0880 Vigna mungo HOM05D004884 ORTHO05D005873 1.6e-36 156.8 176 52.3
QL05p029075 Quercus lobata HOM05D004884 ORTHO05D005873 2.1e-36 156.4 175 51.4
Solyc06g068080.4 Solanum lycopersicum HOM05D004884 ORTHO05D005873 2.8e-36 156.0 191 49.2
Thecc.06G021400 Theobroma cacao HOM05D004884 ORTHO05D005873 2.8e-36 156.0 176 52.8
Atru.chr1.2995 Acer truncatum HOM05D004884 ORTHO05D005873 3.7e-36 155.6 176 51.1
Ciclev10026708m.g Citrus clementina HOM05D004884 ORTHO05D005873 3.7e-36 155.6 176 51.1
ECA247G2927 Erigeron canadensis HOM05D001354 ORTHO05D002582 3.7e-36 155.6 176 52.8
Phvul.010G154800 Phaseolus vulgaris HOM05D004884 ORTHO05D005873 3.7e-36 155.6 176 51.7
GSVIVG01017313001 Vitis vinifera HOM05D004884 ORTHO05D005873 3.7e-36 155.6 176 52.8
unitig_747.g21296 Utricularia gibba HOM05D004884 ORTHO05D005873 4.8e-36 155.2 176 52.8
Hma1.2p1_0515F.1_g170110 Hydrangea macrophylla HOM05D004884 ORTHO05D005873 6.2e-36 154.8 176 51.7
Lalb_Chr22g0350881 Lupinus albus HOM05D004884 ORTHO05D005873 6.2e-36 154.8 176 52.3
Sp1g13700 Schrenkiella parvula HOM05D004884 ORTHO05D005873 6.2e-36 154.8 176 48.9
Sopen06g025360 Solanum pennellii HOM05D004884 ORTHO05D005873 6.2e-36 154.8 176 51.7
PGSC0003DMG400028511 Solanum tuberosum HOM05D004884 ORTHO05D005873 6.2e-36 154.8 176 51.7
BcaB03g14545 Brassica carinata HOM05D004884 ORTHO05D005873 8.2e-36 154.5 176 48.9
BcaC05g25475 Brassica carinata HOM05D004884 ORTHO05D005873 8.2e-36 154.5 176 48.9
BcaC05g25490 Brassica carinata HOM05D004884 ORTHO05D005873 8.2e-36 154.5 176 48.9
A06p11400 Brassica napus HOM05D004884 ORTHO05D005873 8.2e-36 154.5 176 48.9
A09p61460 Brassica napus HOM05D004884 ORTHO05D005873 8.2e-36 154.5 176 48.9
C05p13510 Brassica napus HOM05D004884 ORTHO05D005873 8.2e-36 154.5 176 48.9
C08p45030 Brassica napus HOM05D004884 ORTHO05D005873 8.2e-36 154.5 176 48.9
BolC5t30088H Brassica oleracea HOM05D004884 ORTHO05D005873 8.2e-36 154.5 176 48.9
BraA06t24317Z Brassica rapa HOM05D004884 ORTHO05D005873 8.2e-36 154.5 176 48.9
BraA09t41517Z Brassica rapa HOM05D004884 ORTHO05D005873 8.2e-36 154.5 176 48.9
Thhalv10009024m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 8.2e-36 154.5 176 48.9
Actinidia18100 Actinidia chinensis HOM05D004884 ORTHO05D005873 1.1e-35 154.1 174 52.3
AUR62031521 Chenopodium quinoa HOM05D004884 ORTHO05D005873 1.1e-35 154.1 120 63.3
CSS0003587 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 1.4e-35 153.7 174 52.3
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 1.4e-35 153.7 174 51.7
COL.COLO4_12946 Corchorus olitorius HOM05D004884 ORTHO05D005873 1.4e-35 153.7 176 51.7
Glyma.15G008700 Glycine max HOM05D004884 ORTHO05D005873 1.8e-35 153.3 125 63.2
Lalb_Chr04g0262431 Lupinus albus HOM05D004884 ORTHO05D005873 1.8e-35 153.3 176 50.6
Nn2g12037 Nelumbo nucifera HOM05D004884 ORTHO05D005873 1.8e-35 153.3 176 52.8
RcHm_v2.0_Chr2g0135941 Rosa chinensis HOM05D004884 ORTHO05D005873 1.8e-35 153.3 176 50.6
TAR636G0424 Trochodendron aralioides HOM05D004884 ORTHO05D005873 1.8e-35 153.3 174 51.7
Carub.0001s1514 Capsella rubella HOM05D004884 ORTHO05D005873 2.4e-35 152.9 176 48.3
Duzib235G0621 Durio zibethinus HOM05D004884 ORTHO05D005873 2.4e-35 152.9 176 52.8
BcaC07g41506 Brassica carinata HOM05D004884 ORTHO05D005873 3.1e-35 152.5 176 48.3
BolC8t52049H Brassica oleracea HOM05D004884 ORTHO05D005873 3.1e-35 152.5 176 48.3
FvH4_6g29940 Fragaria vesca HOM05D004884 ORTHO05D005873 3.1e-35 152.5 176 51.7
FAN14G1538 Fragaria x ananassa HOM05D004884 ORTHO05D005873 3.1e-35 152.5 176 51.7
Gohir.A10G074700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 5.3e-35 151.8 176 51.7
AL1G27470 Arabidopsis lyrata HOM05D004884 ORTHO05D005873 6.9e-35 151.4 174 48.3
AT1G15370 Arabidopsis thaliana HOM05D004884 ORTHO05D005873 6.9e-35 151.4 174 48.3
CARHR015900 Cardamine hirsuta HOM05D004884 ORTHO05D005873 6.9e-35 151.4 174 48.3
Lj3g0000080 Lotus japonicus HOM05D004884 ORTHO05D005873 6.9e-35 151.4 176 49.4
Psat5g301920 Pisum sativum HOM05D004884 ORTHO05D005873 6.9e-35 151.4 176 50.0
Aqoxy1G02408 Aquilegia oxysepala HOM05D004884 ORTHO05D005873 9.0e-35 151.0 174 50.6
FAN09G2574 Fragaria x ananassa HOM05D004884 ORTHO05D005873 9.0e-35 151.0 176 51.1
Manes.04G114100 Manihot esculenta HOM05D004884 ORTHO05D005873 1.2e-34 150.6 174 50.6
Sabra01G0135700 Salix brachista HOM05D004884 ORTHO05D005873 1.2e-34 150.6 176 49.4
Thhalv10019295m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 1.5e-34 150.2 176 48.3
Rhsim10G0061400 Rhododendron simsii HOM05D004884 ORTHO05D005873 1.5e-34 150.2 174 50.0
vmacro20098 Vaccinium macrocarpon HOM05D004884 ORTHO05D005873 1.5e-34 150.2 176 50.0
FAN02G1988 Fragaria x ananassa HOM05D004884 ORTHO05D005873 2.0e-34 149.8 176 51.1
TWI34G0752 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 2.0e-34 149.8 176 49.4
Medtr2g103690 Medicago truncatula HOM05D004884 ORTHO05D005873 2.6e-34 149.4 176 50.0
Potri.001G193100 Populus trichocarpa HOM05D004884 ORTHO05D005873 3.4e-34 149.1 176 48.9
Sed0022166 Sechium edule HOM05D004884 ORTHO05D005873 3.4e-34 149.1 168 53.6
Aa31LG4G430 Aethionema arabicum HOM05D004884 ORTHO05D005873 5.8e-34 148.3 123 61.0
Gohir.D06G099800 Gossypium hirsutum HOM05D004884 ORTHO05D005873 5.8e-34 148.3 172 51.7
Solyc11g008330.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 5.8e-34 148.3 176 50.0
Peaxi162Scf00207g00728 Petunia axillaris HOM05D004884 ORTHO05D005873 7.6e-34 147.9 176 50.6
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 1.0e-33 147.5 121 62.8
TWI75G0638 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 1.3e-33 147.1 176 48.3
CSS0011163 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 1.7e-33 146.7 130 57.7
Gorai.010G114700 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.7e-33 146.7 172 51.2
Zm00001eb064920 Zea mays HOM05D004884 ORTHO05D005873 5.5e-32 141.7 174 47.7
FAN05G0038 Fragaria x ananassa HOM05D004884 ORTHO05D005873 7.2e-32 141.4 196 46.4
Potri.006G253700 Populus trichocarpa HOM05D004884 ORTHO05D005873 2.1e-31 139.8 170 47.6
Nitab4.5_0006187g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.0e-30 137.5 172 46.5
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.3e-30 137.1 167 50.3
CAN.G321.60 Capsicum annuum HOM05D004884 ORTHO05D005873 2.5e-29 132.9 125 54.4
Gohir.D13G076450 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.3e-28 130.6 112 60.7
Peaxi162Scf00332g00767 Petunia axillaris HOM05D004884 ORTHO05D005873 1.6e-28 130.2 125 57.6
EL10Ac9g22900 Beta vulgaris HOM05D004884 ORTHO05D005873 2.8e-28 129.4 176 44.9
Gorai.013G087100 Gossypium raimondii HOM05D004884 ORTHO05D005873 2.4e-27 126.3 117 59.0
SMO143G0054 Selaginella moellendorffii HOM05D004884 ORTHO05D005873 5.3e-27 125.2 174 42.5
AUR62012868 Chenopodium quinoa HOM05D004884 ORTHO05D005873 9.0e-27 124.4 174 44.3
Mapoly0005s0226 Marchantia polymorpha HOM05D004884 ORTHO05D005873 3.2e-24 115.9 119 48.7
Pp3c18_11860 Physcomitrium patens HOM05D004884 ORTHO05D005873 4.2e-24 115.5 174 39.7
Gorai.011G082800 Gossypium raimondii HOM05D004884 ORTHO05D005873 5.5e-24 115.2 151 48.3
Sc23g0006790 Simmondsia chinensis HOM05D004884 ORTHO05D005873 5.5e-24 115.2 151 47.0
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 1.6e-23 113.6 151 47.7
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 3.6e-23 112.5 151 46.4
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 3.6e-23 112.5 151 46.4
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 6.1e-23 111.7 152 47.4
Peaxi162Scf00145g01210 Petunia axillaris HOM05D004884 ORTHO05D005873 6.1e-23 111.7 158 43.7
Sabra06G0198100 Salix brachista HOM05D004884 ORTHO05D005873 7.9e-23 111.3 151 46.4
SalBow6G6988 Salvia bowleyana HOM05D004884 ORTHO05D005873 1.0e-22 110.9 150 48.0
AagrBONN_evm.TU.Sc2ySwM_368.2705 Anthoceros agrestis HOM05D004884 ORTHO05D005873 1.4e-22 110.5 173 39.3
Actinidia36285 Actinidia chinensis HOM05D004884 ORTHO05D005873 3.9e-22 109.0 151 46.4
Gohir.A13G076901 Gossypium hirsutum HOM05D004884 ORTHO05D005873 5.1e-22 108.6 112 56.2
Nitab4.5_0005235g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.8e-20 102.8 100 56.0
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 1.3e-17 94.0 142 43.0
Gohir.A06G098210 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.7e-15 86.3 103 50.5
QL05p029040 Quercus lobata HOM05D004884 ORTHO05D005873 3.6e-15 85.9 87 52.9
CBR_g8585 Chara braunii HOM05D004884 ORTHO05D005873 4.7e-15 85.5 116 42.2
BcaC07g41508 Brassica carinata HOM05D004884 ORTHO05D005873 1.5e-13 80.5 139 38.1
Gohir.D01G156500 Gossypium hirsutum HOM05D004884 ORTHO05D005873 6.3e-12 75.1 41 80.5
Nitab4.5_0001450g0150 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.2e-10 70.9 40 77.5
Cre12.g561200 Chlamydomonas reinhardtii HOM05D004884 ORTHO05D005873 1.3e-09 67.4 64 48.4
Oeu024660.1 Olea europaea HOM05D004884 ORTHO05D005873 4.7e-07 58.9 84 47.6
Nitab4.5_0000620g0040 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.8e-06 57.0 79 48.1
MCO11G456 Micromonas commoda HOM05D004884 ORTHO05D005873 5.2e-06 55.5 111 32.4


User provided reference genes

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