Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21461 Corylus avellana HOM05D001921 ORTHO05D001784 6.9e-84 313.9 157 100.0
Haze_21460 Corylus avellana HOM05D001921 ORTHO05D001784 2.2e-82 308.9 157 98.7
Cfa013096 Carpinus fangiana HOM05D001921 ORTHO05D001784 6.3e-61 237.7 157 82.2
Cfa013095 Carpinus fangiana HOM05D001921 ORTHO05D001784 7.6e-59 230.7 157 80.9
Haze_21453 Corylus avellana HOM05D001921 ORTHO05D001784 2.7e-56 222.2 156 78.2
CiPaw.08G008000 Carya illinoinensis HOM05D001921 ORTHO05D001784 4.2e-25 118.6 178 47.2
CiPaw.07G227300 Carya illinoinensis HOM05D001921 ORTHO05D001784 8.3e-21 104.4 170 44.1
Manes.16G126400 Manihot esculenta HOM05D001921 ORTHO05D001784 1.0e-18 97.4 164 43.9
Prupe.1G486700 Prunus persica HOM05D001921 ORTHO05D001784 2.9e-18 95.9 165 40.6
Dinv03420 Davidia involucrata HOM05D001921 ORTHO05D001784 8.6e-18 94.4 174 40.2
Dinv03521 Davidia involucrata HOM05D001921 ORTHO05D001784 1.9e-17 93.2 178 39.3
TWI63G0810 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 2.5e-17 92.8 173 39.9
Prupe.1G486800 Prunus persica HOM05D001921 ORTHO05D001784 4.2e-17 92.0 173 38.7
Ciclev10009542m.g Citrus clementina HOM05D001921 ORTHO05D001784 5.5e-17 91.7 186 37.6
TWI32G1277 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 2.8e-16 89.4 183 38.8
Nn2g12262 Nelumbo nucifera HOM05D001921 ORTHO05D001784 2.3e-15 86.3 175 40.0
Gohir.A07G030700 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.2e-15 85.1 178 37.6
Duzib187G0974 Durio zibethinus HOM05D001921 ORTHO05D001784 8.9e-15 84.3 163 38.7
Sabra06G0203000 Salix brachista HOM05D001921 ORTHO05D001784 1.2e-14 84.0 175 40.6
Atru.chr7.2506 Acer truncatum HOM05D001921 ORTHO05D001784 1.5e-14 83.6 206 35.4
SabraUnG0005100 Salix brachista HOM05D001921 ORTHO05D001784 1.5e-14 83.6 175 40.6
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 1.5e-14 83.6 179 39.1
Gohir.D07G034600 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.0e-14 83.2 178 39.3
Gorai.001G036300 Gossypium raimondii HOM05D001921 ORTHO05D001784 2.6e-14 82.8 178 37.1
Thhalv10026353m.g Eutrema salsugineum HOM05D001921 ORTHO05D001784 3.4e-14 82.4 161 38.5
Carub.0007s0853 Capsella rubella HOM05D001921 ORTHO05D001784 2.2e-13 79.7 181 35.9
RcHm_v2.0_Chr6g0297171 Rosa chinensis HOM05D014836 ORTHO05D001784 2.2e-13 79.7 162 40.7
CARHR239920 Cardamine hirsuta HOM05D001921 ORTHO05D001784 4.9e-13 78.6 180 37.8
Cpa.g.sc127.3 Carica papaya HOM05D001921 ORTHO05D001784 8.3e-13 77.8 174 37.4
Sp7g29820 Schrenkiella parvula HOM05D001921 ORTHO05D001784 1.1e-12 77.4 166 37.3
COL.COLO4_18922 Corchorus olitorius HOM05D001921 ORTHO05D001784 1.4e-12 77.0 178 34.3
Gorai.010G117300 Gossypium raimondii HOM05D001921 ORTHO05D001784 5.4e-12 75.1 178 37.1
Duzib168G1630 Durio zibethinus HOM05D001921 ORTHO05D001784 7.0e-12 74.7 177 36.2
Gohir.D06G102300 Gossypium hirsutum HOM05D001921 ORTHO05D001784 7.0e-12 74.7 178 37.1
AL7G19870 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 9.2e-12 74.3 171 36.8
Potri.006G260000 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.6e-11 73.6 162 38.3
BolC7t46353H Brassica oleracea HOM05D001921 ORTHO05D001784 2.0e-11 73.2 161 36.6
CAN.G1045.40 Capsicum annuum HOM05D001921 ORTHO05D001784 2.7e-11 72.8 155 39.4
Gohir.A06G100200 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.7e-11 72.8 178 36.5
C07p59050 Brassica napus HOM05D001921 ORTHO05D001784 7.8e-11 71.2 162 37.0
Rhsim02G0206800 Rhododendron simsii HOM05D001921 ORTHO05D001784 7.8e-11 71.2 150 40.7
A01p06280 Brassica napus HOM05D001921 ORTHO05D001784 1.0e-10 70.9 174 36.8
A03p61190 Brassica napus HOM05D001921 ORTHO05D001784 1.0e-10 70.9 162 37.7
CSS0005509 Camellia sinensis var. sinensis HOM05D001921 ORTHO05D001784 1.3e-10 70.5 128 42.2
Potri.018G022400 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.3e-10 70.5 180 36.7
Actinidia23087 Actinidia chinensis HOM05D001921 ORTHO05D001784 1.7e-10 70.1 91 48.4
BraA03t15157Z Brassica rapa HOM05D001921 ORTHO05D001784 1.7e-10 70.1 165 38.8
Oeu012641.1 Olea europaea HOM05D001921 ORTHO05D001784 1.7e-10 70.1 174 35.1
Sabra18G0025100 Salix brachista HOM05D001921 ORTHO05D001784 1.7e-10 70.1 179 37.4
AT4G32020 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 5.0e-10 68.6 175 35.4
FAN26G0252 Fragaria x ananassa HOM05D001921 ORTHO05D001784 5.0e-10 68.6 178 36.5
MD15G1131400 Malus domestica HOM05D001921 ORTHO05D001784 8.6e-10 67.8 170 36.5
Aa31sc859G10 Aethionema arabicum HOM05D001921 ORTHO05D001784 1.9e-09 66.6 99 44.4
Hma1.2p1_0028F.1_g017215 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 2.5e-09 66.2 101 47.5
Cfa020875 Carpinus fangiana HOM05D001921 ORTHO05D001784 3.3e-09 65.9 91 48.4
Phvul.003G175500 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 3.3e-09 65.9 167 33.5
Hma1.2p1_2976F.1_g331170 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 4.3e-09 65.5 102 48.0
CARHR116380 Cardamine hirsuta HOM05D001921 ORTHO05D001784 5.6e-09 65.1 166 33.7
COL.COLO4_18732 Corchorus olitorius HOM05D001921 ORTHO05D001784 5.6e-09 65.1 168 34.5
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 7.3e-09 64.7 177 33.3
Cpa.g.sc46.103 Carica papaya HOM05D001921 ORTHO05D001784 7.3e-09 64.7 176 35.8
Manes.06G040800 Manihot esculenta HOM05D001921 ORTHO05D001784 7.3e-09 64.7 153 37.9
C01p06910 Brassica napus HOM05D001921 ORTHO05D001784 9.5e-09 64.3 200 31.5
Psat4g034000 Pisum sativum HOM05D001921 ORTHO05D001784 9.5e-09 64.3 176 29.5
Duzib187G0406 Durio zibethinus HOM05D001921 ORTHO05D001784 1.2e-08 63.9 167 33.5
Lsat_1_v5_gn_6_115320 Lactuca sativa HOM05D001921 ORTHO05D001784 1.2e-08 63.9 215 32.1
MD02G1012300 Malus domestica HOM05D001921 ORTHO05D001784 1.2e-08 63.9 187 34.8
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.2e-08 63.9 159 33.3
Rhsim03G0253600 Rhododendron simsii HOM05D001921 ORTHO05D001784 1.2e-08 63.9 118 41.5
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 1.6e-08 63.5 169 37.9
FAN19G1379 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.1e-08 63.2 179 35.2
EL10Ac6g15007 Beta vulgaris HOM05D001921 ORTHO05D001784 2.8e-08 62.8 116 43.1
Haze_19306 Corylus avellana HOM05D001921 ORTHO05D001784 2.8e-08 62.8 88 46.6
FvH4_1g01550 Fragaria vesca HOM05D001921 ORTHO05D001784 2.8e-08 62.8 179 35.2
PGR102G2943 Punica granatum HOM05D001921 ORTHO05D001784 3.6e-08 62.4 91 45.1
THA.LOC104803850 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 3.6e-08 62.4 94 40.4
Prupe.7G253300 Prunus persica HOM05D001921 ORTHO05D001784 4.7e-08 62.0 102 47.1
MD15G1158100 Malus domestica HOM05D001921 ORTHO05D001784 6.1e-08 61.6 187 34.2
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 6.1e-08 61.6 168 32.1
FAN23G0500 Fragaria x ananassa HOM05D001921 ORTHO05D001784 8.0e-08 61.2 177 35.6
FAN28G2602 Fragaria x ananassa HOM05D001921 ORTHO05D001784 8.0e-08 61.2 179 35.2
Thecc.09G037400 Theobroma cacao HOM05D001921 ORTHO05D001784 8.0e-08 61.2 135 39.3
TAR383G0606 Trochodendron aralioides HOM05D001921 ORTHO05D001784 8.0e-08 61.2 182 29.7
THA.LOC104804502 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 1.0e-07 60.8 162 34.6
Gohir.A06G095800 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.4e-07 60.5 115 39.1
QL02p091546 Quercus lobata HOM05D001921 ORTHO05D001784 1.4e-07 60.5 185 33.0
Actinidia38704 Actinidia chinensis HOM05D001921 ORTHO05D001784 2.3e-07 59.7 158 39.2
CAN.G142.1 Capsicum annuum HOM05D001921 ORTHO05D001784 2.3e-07 59.7 161 36.0
FAN20G2754 Fragaria x ananassa HOM05D014836 ORTHO05D017926 2.3e-07 59.7 173 37.6
Gorai.010G110500 Gossypium raimondii HOM05D001921 ORTHO05D001784 2.3e-07 59.7 115 39.1
DCAR_014829 Daucus carota HOM05D001921 ORTHO05D001784 3.0e-07 59.3 134 41.8
Lj4g0015946 Lotus japonicus HOM05D001921 ORTHO05D001784 3.0e-07 59.3 120 38.3
Lj6g0019201 Lotus japonicus HOM05D001921 ORTHO05D001784 3.0e-07 59.3 94 39.4
Dinv41418 Davidia involucrata HOM05D001921 ORTHO05D001784 4.0e-07 58.9 139 38.1
FAN27G2046 Fragaria x ananassa HOM05D014836 ORTHO05D017926 4.0e-07 58.9 136 41.2
Gohir.A06G095900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 4.0e-07 58.9 124 37.1
Peaxi162Scf00116g00043 Petunia axillaris HOM05D001921 ORTHO05D001784 4.0e-07 58.9 172 33.1
RcHm_v2.0_Chr2g0086511 Rosa chinensis HOM05D001921 ORTHO05D001784 4.0e-07 58.9 184 32.1
AUR62041439 Chenopodium quinoa HOM05D001921 ORTHO05D001784 5.2e-07 58.5 123 39.0
AUR62042019 Chenopodium quinoa HOM05D001921 ORTHO05D001784 5.2e-07 58.5 123 39.0
AUR62043765 Chenopodium quinoa HOM05D001921 ORTHO05D001784 5.2e-07 58.5 123 39.0
Ca_03892_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 5.2e-07 58.5 124 36.3
Gohir.D06G095900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.2e-07 58.5 115 39.1
THA.LOC104818602 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 5.2e-07 58.5 85 42.4
BcaC09g51990 Brassica carinata HOM05D001921 ORTHO05D001784 6.8e-07 58.2 187 32.1
BraA01t00594Z Brassica rapa HOM05D001921 ORTHO05D001784 6.8e-07 58.2 187 32.1
DCAR_017895 Daucus carota HOM05D001921 ORTHO05D001784 6.8e-07 58.2 82 46.3
TPR.G22804 Trifolium pratense HOM05D001921 ORTHO05D001784 6.8e-07 58.2 125 36.0
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 8.9e-07 57.8 178 33.1
BcaC04g24030 Brassica carinata HOM05D001921 ORTHO05D001784 1.2e-06 57.4 127 37.0
Manes.03G011300 Manihot esculenta HOM05D001921 ORTHO05D001784 1.2e-06 57.4 146 34.2
Aqoxy7G03512 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 1.5e-06 57.0 174 29.9
BolC1t00688H Brassica oleracea HOM05D001921 ORTHO05D001784 1.5e-06 57.0 180 32.8
Dinv42904 Davidia involucrata HOM05D001921 ORTHO05D001784 1.5e-06 57.0 160 35.0
Dinv43197 Davidia involucrata HOM05D001921 ORTHO05D001784 1.5e-06 57.0 160 35.0
TPR.G15777 Trifolium pratense HOM05D001921 ORTHO05D001784 1.5e-06 57.0 91 42.9
Psat1g022640 Pisum sativum HOM05D001921 ORTHO05D001784 2.0e-06 56.6 137 35.0
Solyc08g041860.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 2.0e-06 56.6 151 33.8
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 2.0e-06 56.6 157 35.0
AUR62011266 Chenopodium quinoa HOM05D001921 ORTHO05D001784 2.6e-06 56.2 132 39.4
Gohir.D06G096000 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.6e-06 56.2 134 35.1
Sc14g0000060 Simmondsia chinensis HOM05D001921 ORTHO05D001784 2.6e-06 56.2 149 37.6
CiPaw.15G179300 Carya illinoinensis HOM05D001921 ORTHO05D001784 3.4e-06 55.8 150 33.3
VMungo1215G2840 Vigna mungo HOM05D001921 ORTHO05D001784 3.4e-06 55.8 139 33.8
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 4.4e-06 55.5 158 32.9
CiPaw.16G117000 Carya illinoinensis HOM05D001921 ORTHO05D001784 4.4e-06 55.5 164 36.0
Gorai.010G110700 Gossypium raimondii HOM05D001921 ORTHO05D001784 4.4e-06 55.5 134 34.3
Sopen08g012070 Solanum pennellii HOM05D001921 ORTHO05D001784 4.4e-06 55.5 151 33.1
TAR625G0682 Trochodendron aralioides HOM05D001921 ORTHO05D001784 4.4e-06 55.5 175 34.3
Ah.16g104850 Amaranthus hybridus HOM05D001921 ORTHO05D001784 5.8e-06 55.1 94 40.4
C09p01610 Brassica napus HOM05D001921 ORTHO05D001784 5.8e-06 55.1 127 35.4
AUR62031574 Chenopodium quinoa HOM05D000017 ORTHO05D000013 5.8e-06 55.1 100 36.0
Hma1.2p1_0228F.1_g096620 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 5.8e-06 55.1 167 33.5
Lalb_Chr11g0072831 Lupinus albus HOM05D001921 ORTHO05D001784 5.8e-06 55.1 104 40.4
Ah.02g128550 Amaranthus hybridus HOM05D000544 ORTHO05D001784 7.5e-06 54.7 116 37.1
ClCG11G003650 Citrullus lanatus HOM05D001921 ORTHO05D001784 9.8e-06 54.3 120 40.8
Glyma.06G064500 Glycine max HOM05D001921 ORTHO05D001784 9.8e-06 54.3 115 36.5


User provided reference genes

Program Settings