Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 2394.8 1204 100.0
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 2362.0 1204 98.3
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 2088.5 1294 82.2
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 2011.5 1205 83.6
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 2009.6 1205 84.2
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 2000.7 1203 83.9
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1998.4 1131 88.8
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1996.5 1205 83.7
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1995.7 1204 83.1
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1987.2 1204 82.6
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1986.8 1205 83.6
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1976.4 1208 83.4
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1976.4 1204 82.1
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1968.4 1201 82.0
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1965.3 1220 80.9
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1960.7 1212 80.9
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1958.7 1204 81.0
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1958.0 1220 80.8
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1948.3 1220 80.3
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1942.9 1208 81.5
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1941.0 1204 80.0
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1940.6 1204 80.7
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1940.6 1204 80.8
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1939.1 1204 80.7
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1937.2 1204 80.6
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1934.1 1204 80.7
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1933.7 1205 81.6
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1932.5 1205 81.5
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1921.0 1202 81.0
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1918.3 1204 80.1
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1914.0 1206 79.6
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1912.9 1204 79.9
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1899.0 1205 79.2
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1899.0 1204 79.3
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1898.2 1204 79.7
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1891.3 1205 78.8
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1889.4 1290 75.0
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1887.8 1289 75.4
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1887.8 1289 75.4
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1883.6 1206 79.1
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1881.7 1204 78.6
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1880.9 1204 78.6
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1880.1 1204 78.7
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1878.2 1204 78.8
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1868.6 1204 78.7
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1858.6 1206 76.9
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1857.4 1207 77.3
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1852.0 1205 77.8
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1848.9 1203 77.9
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1848.6 1211 76.8
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1848.2 1203 78.0
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1846.6 1207 77.5
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1845.9 1201 78.2
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1843.6 1207 77.5
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1842.8 1203 77.6
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1841.6 1203 77.6
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1839.7 1205 77.6
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1836.6 1206 76.8
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1835.1 1205 77.3
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1832.4 1205 77.2
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1830.1 1204 76.4
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1829.3 1205 77.0
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1825.4 1221 76.2
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1823.5 1205 76.3
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1818.5 1346 71.5
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1817.0 1203 76.0
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1816.2 1205 76.3
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1812.7 1205 76.8
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1809.3 1203 76.1
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1808.5 1203 76.6
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1805.8 1102 83.1
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1805.0 1203 76.0
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1801.6 1204 75.6
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1801.2 1206 75.9
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1799.3 1204 75.8
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1798.9 1203 75.1
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1795.4 1204 75.8
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1775.0 1202 74.4
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1772.3 1236 74.2
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1749.9 1215 72.8
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1728.8 1208 73.8
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1726.1 1204 74.4
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1691.8 1200 71.5
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1686.4 1215 71.2
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1655.6 1211 69.5
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1654.8 1039 80.1
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1632.5 1047 78.6
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1627.5 1013 81.0
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1622.1 1047 78.2
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1592.8 983 81.3
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1579.7 1205 65.8
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1578.9 1204 68.5
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1578.5 1209 66.6
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1570.4 983 80.4
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1568.5 1023 78.3
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1547.7 1214 65.0
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1475.7 997 75.8
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1441.8 1064 68.7
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1437.2 900 80.7
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1395.2 938 75.6
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1376.7 828 83.6
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1313.1 1225 56.8
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1257.7 868 72.1
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1246.9 1233 53.4
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1178.3 904 66.8
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1096.3 1228 50.0
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1095.5 1228 50.2
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 9.4e-274 947.6 1376 42.2
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.8e-272 943.3 1203 44.0
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.1e-253 879.0 1245 42.8
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 3.5e-252 875.9 519 85.5
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.5e-231 807.4 1150 43.0
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 3.4e-199 699.9 424 83.3
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 9.1e-168 595.5 434 70.7
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 9.1e-160 568.9 487 63.7
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.3e-155 554.3 754 44.4
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 6.3e-153 546.2 306 85.9
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 5.0e-150 536.6 324 81.2
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 7.0e-144 516.2 351 75.8
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 2.0e-130 471.5 323 70.9
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 4.1e-120 437.2 292 76.4
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 2.0e-114 418.3 329 68.4
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 1.1e-99 369.4 315 61.0
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 1.4e-99 369.0 394 53.3
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 4.9e-97 360.5 361 52.9
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 8.4e-89 333.2 256 68.8
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 8.7e-86 323.2 284 56.0
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 5.3e-67 260.8 166 79.5
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 3.8e-65 254.6 272 51.1
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 3.0e-54 218.4 208 58.7
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.2e-52 212.2 165 66.1
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 8.2e-52 210.3 116 85.3
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 5.9e-50 204.1 159 67.3
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 9.4e-48 196.8 117 79.5
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 6.1e-47 194.1 727 26.0
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.0e-46 191.8 192 54.7
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.9e-46 191.4 138 63.8
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 1.0e-38 166.8 164 59.8
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.0e-38 164.9 270 40.0
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.7e-33 149.4 165 51.5
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.5e-32 146.4 86 86.0
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 5.4e-19 101.3 71 64.8
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 1.3e-17 96.7 59 78.0
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 5.0e-17 94.7 62 72.6
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 1.3e-12 80.1 45 75.6
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.2e-12 79.3 235 31.1
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 8.3e-12 77.4 53 60.4
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 7.0e-11 74.3 74 63.5
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 7.0e-11 74.3 74 63.5
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 9.2e-11 73.9 70 55.7
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 2.7e-10 72.4 60 68.3
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 3.0e-09 68.9 38 81.6
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 1.5e-08 66.6 55 58.2
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 2.1e-07 62.8 54 63.0
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.3e-06 59.3 102 39.2


User provided reference genes

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