Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 6.9e-151 537.3 284 100.0
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 1.6e-139 499.6 308 88.3
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 2.4e-127 459.1 309 78.6
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.6e-123 446.4 308 78.2
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 3.6e-123 445.3 308 77.9
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 1.8e-114 416.4 308 71.1
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 1.1e-111 407.1 308 68.8
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 2.4e-111 406.0 313 70.6
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 2.0e-110 402.9 309 68.6
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 1.0e-109 400.6 308 67.5
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 1.5e-108 396.7 305 69.2
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 1.9e-108 396.4 304 69.7
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 1.9e-108 396.4 309 68.6
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.5e-108 396.0 308 66.6
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 4.2e-108 395.2 310 67.7
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 4.2e-108 395.2 308 66.2
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 5.5e-108 394.8 310 68.4
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 9.4e-108 394.0 307 67.8
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 2.1e-107 392.9 310 68.4
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 4.7e-107 391.7 308 65.9
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 8.0e-107 391.0 313 67.1
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 4.0e-106 388.7 306 67.6
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 8.8e-106 387.5 307 67.4
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 2.0e-105 386.3 308 66.6
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 9.8e-105 384.0 308 64.9
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 1.7e-104 383.3 305 67.9
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 2.4e-103 379.4 310 67.4
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 5.4e-103 378.3 308 65.6
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 1.6e-102 376.7 312 67.0
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 2.0e-102 376.3 308 66.2
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 2.0e-102 376.3 306 65.4
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 2.0e-102 376.3 302 65.6
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 2.7e-102 375.9 303 68.0
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 4.5e-102 375.2 310 66.8
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 7.7e-102 374.4 301 66.1
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 2.3e-101 372.9 308 64.3
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 2.9e-101 372.5 308 66.6
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 6.6e-101 371.3 308 66.6
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 1.5e-100 370.2 306 63.4
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 4.3e-100 368.6 306 63.4
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 5.6e-100 368.2 304 65.1
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 7.2e-100 367.9 306 63.4
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 2.8e-99 365.9 310 65.8
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 4.7e-99 365.2 333 62.2
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 6.1e-99 364.8 303 67.0
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 3.0e-98 362.5 272 69.9
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 8.9e-98 360.9 308 61.7
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 3.4e-97 359.0 308 64.3
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 1.3e-96 357.1 308 61.4
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 2.9e-96 355.9 305 63.9
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 3.7e-96 355.5 308 63.6
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 8.3e-96 354.4 312 63.1
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 8.3e-96 354.4 305 63.9
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 1.4e-95 353.6 310 60.3
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.8e-95 353.2 312 62.8
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 1.2e-94 350.5 305 61.0
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 2.0e-94 349.7 302 61.3
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 3.5e-94 349.0 307 61.2
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 4.6e-94 348.6 308 60.7
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 7.8e-94 347.8 304 62.5
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 2.3e-93 346.3 308 60.1
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 2.3e-93 346.3 308 59.1
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 3.0e-93 345.9 302 62.6
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 3.9e-93 345.5 331 59.8
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.5e-92 343.6 308 62.7
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.9e-92 343.2 330 59.4
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.9e-92 343.2 328 59.8
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 1.9e-92 343.2 303 60.1
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 2.5e-92 342.8 299 62.5
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 2.5e-92 342.8 302 62.6
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 7.3e-92 341.3 326 58.9
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 1.2e-91 340.5 301 62.5
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 1.2e-91 340.5 306 59.5
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 2.1e-91 339.7 308 58.4
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 2.8e-91 339.3 308 58.8
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 6.2e-91 338.2 304 59.2
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 8.0e-91 337.8 308 59.4
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 8.0e-91 337.8 303 60.4
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.0e-90 337.4 306 58.5
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 2.3e-90 336.3 306 57.8
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 3.1e-90 335.9 309 59.5
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 5.2e-90 335.1 309 58.3
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 1.2e-89 334.0 309 57.9
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 1.2e-89 334.0 309 57.9
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 1.2e-89 334.0 309 57.9
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 1.2e-89 334.0 302 58.9
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 1.5e-89 333.6 296 62.2
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.5e-89 333.6 306 61.4
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 2.0e-89 333.2 309 59.5
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 2.6e-89 332.8 317 55.5
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 5.8e-89 331.6 307 59.6
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 7.5e-89 331.3 303 62.4
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 7.5e-89 331.3 309 58.6
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 9.8e-89 330.9 309 57.3
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 9.8e-89 330.9 309 57.3
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 1.3e-88 330.5 303 61.4
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 1.3e-88 330.5 302 57.9
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 2.2e-88 329.7 308 57.1
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 2.2e-88 329.7 308 57.1
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 6.4e-88 328.2 304 58.6
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 1.1e-87 327.4 290 62.4
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 1.4e-87 327.0 306 57.2
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 1.9e-87 326.6 308 60.4
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 3.2e-87 325.9 286 61.9
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 4.1e-87 325.5 308 56.5
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 4.1e-87 325.5 308 58.8
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 7.0e-87 324.7 299 59.2
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 9.2e-87 324.3 308 58.8
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 3.5e-86 322.4 293 59.4
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 7.8e-86 321.2 304 57.2
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 3.0e-85 319.3 261 64.8
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 5.0e-85 318.5 314 56.1
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 9.5e-84 314.3 302 57.3
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 1.6e-83 313.5 307 57.3
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.6e-83 312.4 308 55.8
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 1.1e-82 310.8 278 62.6
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 4.0e-82 308.9 326 54.9
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 1.5e-81 307.0 300 52.7
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 1.5e-81 307.0 260 61.2
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 2.0e-81 306.6 305 58.4
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 5.8e-81 305.1 284 61.3
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 1.3e-80 303.9 298 52.0
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 3.7e-80 302.4 302 55.6
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 6.4e-80 301.6 261 63.6
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 1.4e-79 300.4 381 48.0
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 2.4e-79 299.7 260 60.8
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 2.7e-78 296.2 278 60.4
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 2.7e-78 296.2 299 51.2
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 6.0e-78 295.0 308 53.2
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 8.6e-77 291.2 262 58.4
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 1.1e-76 290.8 302 53.3
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 1.5e-76 290.4 276 58.3
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 1.4e-74 283.9 302 52.6
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 1.8e-74 283.5 306 49.0
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 9.9e-73 277.7 292 54.1
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.7e-72 276.9 272 58.8
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 4.0e-66 255.8 259 52.1
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 2.6e-65 253.1 304 46.7
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 1.1e-63 247.7 260 49.6
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 9.3e-63 244.6 269 54.3
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 5.3e-58 228.8 264 48.9
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.0e-53 214.5 169 67.5
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 5.1e-53 212.2 233 54.5
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 6.9e-42 175.3 202 55.4
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 1.1e-39 167.9 223 44.8
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 4.6e-38 162.5 144 61.1
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 2.3e-37 160.2 116 63.8
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 3.0e-37 159.8 146 57.5
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 1.1e-36 157.9 186 47.3
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 3.1e-34 149.8 95 78.9
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 1.2e-30 137.9 304 30.9
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 6.1e-30 135.6 199 44.7
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 1.5e-20 104.4 66 80.3
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 1.2e-17 94.7 88 60.2
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 2.2e-16 90.5 65 69.2
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 4.8e-11 72.8 85 44.7
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 6.3e-11 72.4 49 73.5
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.3e-08 64.7 39 74.4
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 8.5e-08 62.0 65 50.8


User provided reference genes

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