Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 8.6e-128 460.3 227 100.0
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.1e-82 310.5 200 81.0
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.4e-82 310.1 200 79.0
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.4e-82 310.1 200 79.0
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 1.4e-82 310.1 200 79.5
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 5.4e-82 308.1 195 81.5
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 9.3e-82 307.4 224 73.7
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.2e-81 307.0 200 79.5
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 1.6e-81 306.6 224 72.3
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 1.6e-81 306.6 200 80.5
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 2.1e-81 306.2 194 80.9
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 2.7e-81 305.8 200 79.5
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 3.5e-81 305.4 200 78.5
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 3.5e-81 305.4 200 78.5
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.5e-81 305.4 200 79.0
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.5e-81 305.4 200 78.0
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.5e-81 305.4 200 78.5
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 3.5e-81 305.4 224 71.9
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 4.6e-81 305.1 195 79.5
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 6.0e-81 304.7 224 72.3
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.9e-81 304.3 200 78.0
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 1.8e-80 303.1 200 78.0
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 2.3e-80 302.8 200 77.5
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 5.1e-80 301.6 200 77.0
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 5.1e-80 301.6 224 71.4
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.1e-79 300.4 200 77.5
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.9e-79 299.7 200 78.5
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 2.5e-79 299.3 200 77.0
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 5.6e-79 298.1 201 76.6
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.3e-78 297.0 201 76.1
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.3e-78 297.0 203 76.4
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.3e-78 297.0 224 71.4
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 3.7e-78 295.4 195 77.4
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 4.8e-78 295.0 200 78.0
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 4.8e-78 295.0 200 76.5
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 6.2e-78 294.7 200 76.0
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 1.1e-77 293.9 205 72.7
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.4e-77 293.5 200 75.0
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 1.8e-77 293.1 200 77.5
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.8e-77 293.1 277 61.7
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 2.4e-77 292.7 200 77.5
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 3.1e-77 292.4 200 74.0
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 3.1e-77 292.4 200 76.0
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 3.1e-77 292.4 207 72.5
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 4.0e-77 292.0 201 77.1
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 4.0e-77 292.0 200 74.0
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 5.3e-77 291.6 224 69.2
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 6.9e-77 291.2 200 75.0
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 9.0e-77 290.8 200 75.5
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 2.0e-76 289.7 200 75.0
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 2.0e-76 289.7 200 75.0
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 3.4e-76 288.9 195 77.9
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.5e-76 288.5 224 70.1
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 4.5e-76 288.5 211 71.6
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 4.5e-76 288.5 201 76.1
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 5.8e-76 288.1 200 74.5
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 1.7e-75 286.6 200 74.0
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 1.7e-75 286.6 200 74.5
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 2.9e-75 285.8 200 72.0
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 3.8e-75 285.4 200 72.0
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 3.8e-75 285.4 201 75.6
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 3.8e-75 285.4 200 74.5
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 6.5e-75 284.6 200 72.5
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 6.5e-75 284.6 200 72.5
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 6.5e-75 284.6 201 72.1
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 1.1e-74 283.9 200 74.0
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.9e-74 283.1 200 73.5
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 4.2e-74 282.0 201 74.6
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 4.2e-74 282.0 200 74.5
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 7.1e-74 281.2 224 67.9
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 9.3e-74 280.8 202 72.3
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 1.2e-73 280.4 195 75.4
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.2e-73 280.4 200 72.0
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 1.2e-73 280.4 222 69.8
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 2.1e-73 279.6 195 75.9
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 2.1e-73 279.6 201 74.1
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 2.7e-73 279.3 193 73.1
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 3.5e-73 278.9 195 72.3
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 3.5e-73 278.9 200 71.0
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 4.6e-73 278.5 200 71.0
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 4.6e-73 278.5 201 73.6
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 4.6e-73 278.5 200 71.0
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 7.9e-73 277.7 200 71.0
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 1.0e-72 277.3 200 71.5
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 1.0e-72 277.3 200 71.5
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.0e-72 277.3 200 71.0
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 1.3e-72 276.9 200 70.5
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.3e-72 276.9 200 72.5
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.3e-72 276.9 200 72.5
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 2.3e-72 276.2 201 73.6
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.0e-72 275.8 188 76.1
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 3.0e-72 275.8 195 71.3
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.9e-72 275.4 193 74.6
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 5.1e-72 275.0 200 71.0
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 5.1e-72 275.0 200 71.0
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 5.1e-72 275.0 215 67.4
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 5.1e-72 275.0 202 72.3
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 6.7e-72 274.6 195 71.8
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 8.7e-72 274.2 193 74.1
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 1.1e-71 273.9 215 67.0
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.5e-71 273.5 201 70.1
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 1.5e-71 273.5 201 70.1
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.5e-71 273.5 201 70.1
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.5e-71 273.5 200 71.0
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.9e-71 273.1 201 70.1
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 1.9e-71 273.1 196 71.4
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 4.3e-71 271.9 201 69.7
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 4.3e-71 271.9 200 71.0
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 5.7e-71 271.6 200 69.5
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.6e-70 270.0 201 69.7
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 6.2e-70 268.1 200 67.0
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 6.2e-70 268.1 200 69.5
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 8.2e-70 267.7 193 71.0
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 8.2e-70 267.7 194 72.7
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 1.4e-69 266.9 200 70.0
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 1.4e-69 266.9 200 71.5
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 1.5e-68 263.5 195 70.8
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.3e-67 260.4 195 69.7
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 2.9e-67 259.2 227 64.8
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 2.9e-67 259.2 227 64.8
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 6.5e-67 258.1 177 76.8
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.9e-66 256.5 200 68.5
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 2.5e-66 256.1 196 70.4
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 3.5e-65 252.3 200 68.5
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 2.3e-64 249.6 200 67.5
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 1.4e-61 240.4 183 66.7
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 3.1e-61 239.2 175 71.4
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 3.8e-59 232.3 225 57.3
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 9.4e-58 227.6 195 60.5
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 1.5e-55 220.3 196 58.7
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 7.4e-55 218.0 200 61.5
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.8e-53 213.4 191 57.1
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 1.3e-51 207.2 193 56.0
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.3e-51 207.2 192 55.7
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 1.0e-43 181.0 100 92.0
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 1.3e-43 180.6 203 54.7
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 7.2e-42 174.9 158 59.5
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 1.2e-41 174.1 190 48.9
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.3e-38 164.1 102 82.4
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.1e-37 161.0 117 71.8
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 4.1e-29 132.5 75 85.3
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 4.1e-29 132.5 75 85.3
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.3e-27 127.5 132 56.8
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.6e-25 120.6 188 37.2
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 1.8e-24 117.1 107 58.9
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 3.4e-23 112.8 207 34.8
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.9e-22 109.0 55 92.7
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.9e-22 109.0 64 79.7
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.1e-21 106.3 62 83.9
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 9.1e-21 104.8 249 36.9
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 1.2e-20 104.4 59 83.1
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 2.7e-20 103.2 62 79.0
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 5.4e-13 79.0 190 31.6
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 2.7e-12 76.6 184 29.9
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 3.0e-11 73.2 45 75.6
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 5.0e-11 72.4 51 70.6
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 5.0e-11 72.4 37 91.9
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 8.6e-11 71.6 115 40.9
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 5.6e-10 68.9 38 89.5
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 7.3e-10 68.6 40 77.5
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 2.8e-09 66.6 43 76.7
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 4.7e-09 65.9 43 74.4
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 6.2e-09 65.5 66 54.5
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 1.8e-08 63.9 38 78.9
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 1.8e-08 63.9 38 78.9
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 5.2e-08 62.4 115 37.4
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 3.4e-07 59.7 43 69.8
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 5.8e-07 58.9 29 93.1


User provided reference genes

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