Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.4e-207 726.1 380 100.0
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 6.1e-179 630.9 380 87.4
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.3e-168 596.7 351 90.9
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 3.5e-142 508.8 398 69.3
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.5e-105 387.1 208 92.8
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 2.4e-98 363.2 437 51.5
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 5.3e-98 362.1 470 47.2
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 1.2e-97 360.9 438 50.0
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 2.6e-97 359.8 499 44.7
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 3.5e-97 359.4 501 44.3
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 1.7e-96 357.1 431 50.6
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.7e-96 357.1 468 47.2
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 2.9e-96 356.3 498 46.6
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 3.8e-96 355.9 434 50.0
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.0e-96 355.5 434 50.0
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 6.5e-96 355.1 441 49.9
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 1.1e-95 354.4 497 45.5
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.9e-95 353.6 463 46.7
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 1.9e-95 353.6 448 47.5
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.2e-95 352.4 431 50.3
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 7.2e-95 351.7 468 46.6
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 9.4e-95 351.3 446 50.2
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 9.4e-95 351.3 456 46.7
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 1.6e-94 350.5 485 44.5
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 3.6e-94 349.4 468 47.0
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 4.7e-94 349.0 469 47.5
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 6.1e-94 348.6 431 47.8
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 3.0e-93 346.3 473 47.8
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 3.9e-93 345.9 465 46.5
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 2.2e-91 340.1 485 44.5
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.8e-91 339.7 489 43.8
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 4.8e-91 339.0 457 47.3
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 8.2e-91 338.2 484 44.8
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 8.2e-91 338.2 481 45.5
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.1e-90 337.8 482 44.0
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 3.5e-89 332.8 472 45.3
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 5.9e-89 332.0 476 43.5
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.7e-88 330.5 481 45.3
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 2.9e-88 329.7 469 43.7
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 3.8e-88 329.3 397 48.1
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 3.8e-88 329.3 483 42.9
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 5.0e-88 328.9 523 41.3
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 8.5e-88 328.2 506 41.7
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.5e-87 327.4 477 45.1
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 1.9e-87 327.0 496 42.1
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 7.2e-87 325.1 461 43.2
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.6e-86 323.9 477 44.7
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.0e-85 321.2 410 45.4
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.8e-85 320.5 467 42.8
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 3.0e-85 319.7 473 42.5
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.2e-84 317.8 462 43.7
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 1.2e-84 317.8 460 43.3
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 2.6e-84 316.6 531 39.7
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 3.7e-83 312.8 486 42.0
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 4.8e-83 312.4 490 41.4
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 4.8e-83 312.4 500 40.4
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 6.3e-83 312.0 471 41.0
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 8.2e-83 311.6 476 41.2
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.1e-82 311.2 451 42.6
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.8e-82 310.5 519 39.9
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 3.1e-82 309.7 470 42.1
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 3.1e-82 309.7 470 43.2
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 4.1e-82 309.3 461 42.3
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 9.1e-82 308.1 458 41.9
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 9.1e-82 308.1 458 41.9
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 9.1e-82 308.1 466 42.9
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.6e-81 307.4 472 42.8
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 1.6e-81 307.4 462 41.8
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.0e-81 307.0 470 42.1
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.0e-81 307.0 516 39.0
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.0e-81 307.0 516 39.0
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 2.7e-81 306.6 469 41.8
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 3.5e-81 306.2 471 41.8
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 4.5e-81 305.8 471 41.2
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.0e-80 304.7 410 45.9
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 1.0e-80 304.7 488 41.8
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 3.8e-80 302.8 472 42.2
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 6.5e-80 302.0 482 40.9
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 8.5e-80 301.6 458 41.9
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 3.2e-79 299.7 483 41.0
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 9.4e-79 298.1 477 39.8
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.2e-78 297.7 490 42.0
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.6e-78 297.4 465 41.9
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 2.7e-78 296.6 398 45.0
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 4.7e-78 295.8 484 40.3
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 1.0e-77 294.7 388 47.2
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 1.8e-77 293.9 489 41.5
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.3e-77 293.5 402 44.5
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 6.8e-77 292.0 471 41.8
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 8.8e-77 291.6 396 45.5
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 8.8e-77 291.6 396 45.5
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.2e-76 291.2 415 43.6
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 9.8e-76 288.1 411 43.1
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 9.8e-76 288.1 511 36.8
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 9.8e-76 288.1 468 40.0
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 1.3e-75 287.7 465 40.9
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.8e-75 286.6 469 39.2
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 8.3e-75 285.0 463 41.3
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 9.1e-74 281.6 393 44.8
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 2.0e-73 280.4 511 35.8
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 4.5e-73 279.3 439 40.8
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 2.9e-72 276.6 424 42.5
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 3.3e-71 273.1 466 39.9
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 6.1e-70 268.9 444 39.9
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 8.0e-70 268.5 397 41.1
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 2.3e-69 266.9 305 47.5
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 4.4e-68 262.7 401 41.6
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 4.9e-67 259.2 457 38.9
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 8.3e-67 258.5 358 44.1
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 7.0e-66 255.4 463 38.2
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 9.2e-66 255.0 334 46.1
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 1.2e-65 254.6 388 40.5
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 1.3e-64 251.1 432 38.9
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.1e-63 248.1 351 43.9
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.0e-61 241.5 428 40.2
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 6.8e-61 238.8 293 46.4
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 3.4e-60 236.5 556 32.4
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 7.5e-52 208.8 385 40.3
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 7.0e-50 202.2 393 39.9
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 1.0e-48 198.4 452 33.0
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 4.3e-47 193.0 171 59.1
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 5.6e-47 192.6 315 42.2
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.3e-40 171.4 209 48.8
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 7.3e-39 165.6 388 32.7
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 1.2e-38 164.9 210 46.7
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.1e-38 164.1 216 49.5
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 2.4e-34 150.6 178 47.2
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 5.4e-34 149.4 216 44.9
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.2e-28 131.7 214 43.0
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 3.4e-28 130.2 175 38.3
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.2e-25 121.7 233 37.8
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 2.1e-25 120.9 117 52.1
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 1.1e-21 108.6 135 43.0
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.4e-21 108.2 204 36.3
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 1.2e-20 105.1 202 38.1
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 2.6e-20 104.0 176 40.3
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 3.4e-20 103.6 179 36.9
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 7.6e-20 102.4 126 42.9
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 1.3e-19 101.7 212 33.0
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 2.2e-19 100.9 349 26.1
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 1.9e-18 97.8 74 58.1
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.4e-18 97.4 201 35.3
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 9.3e-18 95.5 125 41.6
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 1.6e-17 94.7 79 58.2
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 1.8e-16 91.3 123 38.2
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 1.8e-16 91.3 113 44.2
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 4.3e-15 86.7 117 37.6
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 8.1e-14 82.4 155 38.7
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 9.0e-13 79.0 203 29.1
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.0e-11 75.5 145 36.6
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 2.5e-10 70.9 102 41.2
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 1.6e-09 68.2 115 40.9
FAN11G0972 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.6e-09 68.2 182 31.3
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 1.8e-08 64.7 47 59.6
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 5.1e-08 63.2 212 25.5
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 6.7e-08 62.8 115 40.0
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.5e-07 61.6 72 44.4
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.9e-07 61.2 71 43.7


User provided reference genes

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