Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21246 Corylus avellana HOM05D005244 ORTHO05D006539 0.0e+00 1646.7 817 100.0
CiPaw.07G237900 Carya illinoinensis HOM05D005244 ORTHO05D006539 0.0e+00 1275.8 822 80.0
QL11p005809 Quercus lobata HOM05D005244 ORTHO05D006539 0.0e+00 1272.3 850 77.6
QL11p006533 Quercus lobata HOM05D005244 ORTHO05D006539 0.0e+00 1272.3 850 77.5
Dinv12631 Davidia involucrata HOM05D005244 ORTHO05D006539 0.0e+00 1247.6 830 76.3
Prupe.1G001000 Prunus persica HOM05D005244 ORTHO05D006539 0.0e+00 1222.2 823 75.8
MD04G1001000 Malus domestica HOM05D005244 ORTHO05D006539 0.0e+00 1221.5 824 75.7
Lju50C34G1 Lonicera japonica HOM05D005244 ORTHO05D006539 0.0e+00 1216.8 894 70.9
TWI34G0889 Tripterygium wilfordii HOM05D005244 ORTHO05D006539 0.0e+00 1209.1 823 75.3
Atru.chr7.1024 Acer truncatum HOM05D005244 ORTHO05D006539 0.0e+00 1206.8 791 77.5
Manes.02G225500 Manihot esculenta HOM05D005244 ORTHO05D006539 0.0e+00 1192.9 824 75.0
CSS0037198 Camellia sinensis var. sinensis HOM05D005244 ORTHO05D006539 0.0e+00 1191.8 843 73.5
Thecc.09G197300 Theobroma cacao HOM05D005244 ORTHO05D006539 0.0e+00 1190.3 825 73.5
Actinidia02527 Actinidia chinensis HOM05D005244 ORTHO05D006539 0.0e+00 1183.3 820 73.2
Nitab4.5_0000807g0220 Nicotiana tabacum HOM05D005244 ORTHO05D006539 0.0e+00 1172.9 820 72.1
MSTRG.26510 Avicennia marina HOM05D005244 ORTHO05D006539 0.0e+00 1169.8 825 71.9
Potri.006G080700 Populus trichocarpa HOM05D005244 ORTHO05D006539 0.0e+00 1169.5 829 72.5
Nitab4.5_0000170g0280 Nicotiana tabacum HOM05D005244 ORTHO05D006539 0.0e+00 1161.7 824 71.2
COL.COLO4_08830 Corchorus olitorius HOM05D005244 ORTHO05D006539 0.0e+00 1161.4 845 70.8
TAR383G0812 Trochodendron aralioides HOM05D005244 ORTHO05D006539 0.0e+00 1160.6 830 72.5
PGR044G0827 Punica granatum HOM05D005244 ORTHO05D006539 0.0e+00 1159.8 827 71.9
RcHm_v2.0_Chr4g0393651 Rosa chinensis HOM05D005244 ORTHO05D006539 0.0e+00 1156.4 830 71.2
Potri.018G150600 Populus trichocarpa HOM05D005244 ORTHO05D006539 0.0e+00 1155.2 854 70.7
CAN.G57.4 Capsicum annuum HOM05D005244 ORTHO05D006539 0.0e+00 1153.3 821 70.8
CsaV3_1G044170 Cucumis sativus L. HOM05D005244 ORTHO05D006539 0.0e+00 1149.8 825 71.5
Nn8g41249 Nelumbo nucifera HOM05D005244 ORTHO05D006539 0.0e+00 1149.4 833 71.2
Gohir.A08G016900 Gossypium hirsutum HOM05D005244 ORTHO05D006539 0.0e+00 1148.7 825 71.0
Eucgr.C02153 Eucalyptus grandis HOM05D005244 ORTHO05D006539 0.0e+00 1147.1 817 71.6
Sopen07g022510 Solanum pennellii HOM05D005244 ORTHO05D006539 0.0e+00 1147.1 833 70.3
MELO3C010012.2 Cucumis melo HOM05D005244 ORTHO05D006539 0.0e+00 1145.2 831 70.8
Gohir.D08G027300 Gossypium hirsutum HOM05D005244 ORTHO05D006539 0.0e+00 1142.5 824 70.4
Gorai.004G024200 Gossypium raimondii HOM05D005244 ORTHO05D006539 0.0e+00 1142.5 824 70.4
Solyc07g042910.4 Solanum lycopersicum HOM05D005244 ORTHO05D006539 0.0e+00 1140.9 897 66.8
Actinidia07539 Actinidia chinensis HOM05D005244 ORTHO05D006539 0.0e+00 1135.9 812 71.4
MBI16_g40729_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 0.0e+00 1133.2 842 69.1
THA.LOC104817833 Tarenaya hassleriana HOM05D005244 ORTHO05D006539 0.0e+00 1129.8 817 70.1
FvH4_4g03800 Fragaria vesca HOM05D005244 ORTHO05D006539 0.0e+00 1128.6 828 70.0
Aqoxy7G02584 Aquilegia oxysepala HOM05D005244 ORTHO05D006539 0.0e+00 1127.1 818 69.1
FAN22G0231 Fragaria x ananassa HOM05D005244 ORTHO05D006539 0.0e+00 1127.1 834 70.0
DCAR_020446 Daucus carota HOM05D005244 ORTHO05D006539 0.0e+00 1126.3 836 69.3
FAN12G3076 Fragaria x ananassa HOM05D005244 ORTHO05D006539 0.0e+00 1125.9 828 69.9
FAN12G3464 Fragaria x ananassa HOM05D005244 ORTHO05D006539 0.0e+00 1125.9 828 69.9
Sed0018574 Sechium edule HOM05D005244 ORTHO05D006539 0.0e+00 1123.2 828 69.9
GSVIVG01034254001 Vitis vinifera HOM05D005244 ORTHO05D006539 0.0e+00 1117.8 1065 58.3
Glyma.01G000900 Glycine max HOM05D005244 ORTHO05D006539 0.0e+00 1117.4 852 68.1
Migut.L01612 Erythranthe guttata HOM05D005244 ORTHO05D006539 0.0e+00 1111.7 896 66.0
Lsat_1_v5_gn_5_80020 Lactuca sativa HOM05D005244 ORTHO05D006539 0.0e+00 1111.3 825 70.1
VMungo0464G0587 Vigna mungo HOM05D005244 ORTHO05D006539 0.0e+00 1108.2 817 69.6
CANSAT80G0544 Cannabis sativa HOM05D005244 ORTHO05D006539 0.0e+00 1104.0 830 70.5
AL8G34210 Arabidopsis lyrata HOM05D005244 ORTHO05D006539 0.0e+00 1103.6 826 66.6
arahy.Tifrunner.gnm1.ann1.MPB88K Arachis hypogaea HOM05D005244 ORTHO05D006539 0.0e+00 1102.4 828 69.4
AT5G58100 Arabidopsis thaliana HOM05D005244 ORTHO05D006539 0.0e+00 1102.0 826 66.7
HanXRQChr10g0309401 Helianthus annuus HOM05D005244 ORTHO05D006539 0.0e+00 1102.0 839 67.7
arahy.Tifrunner.gnm1.ann1.GU0YFX Arachis hypogaea HOM05D005244 ORTHO05D006539 0.0e+00 1099.7 828 69.4
ECA234G0362 Erigeron canadensis HOM05D005244 ORTHO05D006539 0.0e+00 1099.7 825 68.6
Thhalv10012595m.g Eutrema salsugineum HOM05D005244 ORTHO05D006539 0.0e+00 1099.7 822 67.3
SGA_v2.0_scaffold21G09589 Striga asiatica HOM05D005244 ORTHO05D006539 0.0e+00 1099.0 841 67.9
Ciclev10007431m.g Citrus clementina HOM05D005244 ORTHO05D006539 0.0e+00 1098.2 685 80.3
Duzib168G0486 Durio zibethinus HOM05D005244 ORTHO05D006539 0.0e+00 1094.0 799 71.3
Sc25g0001730 Simmondsia chinensis HOM05D005244 ORTHO05D006539 0.0e+00 1094.0 824 68.4
vmacro20731 Vaccinium macrocarpon HOM05D005244 ORTHO05D006539 0.0e+00 1094.0 894 64.9
Rhsim01G0102600 Rhododendron simsii HOM05D005244 ORTHO05D006539 0.0e+00 1093.6 954 61.7
Carub.0008s1866 Capsella rubella HOM05D005244 ORTHO05D006539 0.0e+00 1092.4 826 66.3
Ca_25641_v3 Cicer arietinum L. HOM05D005244 ORTHO05D006539 0.0e+00 1090.5 825 68.7
Sp6g19790 Schrenkiella parvula HOM05D005244 ORTHO05D006539 0.0e+00 1090.5 826 66.6
PSO170G3502 Papaver somniferum HOM05D005244 ORTHO05D006539 0.0e+00 1089.7 835 67.3
Psat1g052040 Pisum sativum HOM05D005244 ORTHO05D006539 0.0e+00 1089.3 825 68.7
Medtr5g019500 Medicago truncatula HOM05D005244 ORTHO05D006539 0.0e+00 1083.6 826 68.8
BcaB08g36163 Brassica carinata HOM05D005244 ORTHO05D006539 0.0e+00 1083.2 826 66.6
PSO063G2947 Papaver somniferum HOM05D005244 ORTHO05D006539 0.0e+00 1080.9 834 66.4
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 0.0e+00 1080.5 827 65.7
C09p50010 Brassica napus HOM05D005244 ORTHO05D006539 0.0e+00 1079.3 826 66.5
BcaC04g19907 Brassica carinata HOM05D005244 ORTHO05D006539 0.0e+00 1077.8 826 66.3
Lj2g0016843 Lotus japonicus HOM05D005244 ORTHO05D006539 0.0e+00 1076.2 828 67.5
Cc06_g23580 Coffea canephora HOM05D005244 ORTHO05D006539 0.0e+00 1075.8 962 60.8
TPR.G18623 Trifolium pratense HOM05D005244 ORTHO05D006539 0.0e+00 1075.8 828 68.5
AUR62020750 Chenopodium quinoa HOM05D005244 ORTHO05D006539 5.6e-312 1074.7 842 65.2
EL10Ac2g03605 Beta vulgaris HOM05D005244 ORTHO05D006539 1.9e-310 1068.9 830 65.5
Hund03212 Selenicereus undatus HOM05D005244 ORTHO05D006539 2.7e-309 1065.1 824 65.8
Peaxi162Scf01347g00132 Petunia axillaris HOM05D005244 ORTHO05D006539 6.1e-309 1063.9 684 76.6
ATR0626G132 Amborella trichopoda HOM05D005244 ORTHO05D006539 2.3e-308 1062.0 832 66.7
BolC9t57854H Brassica oleracea HOM05D005244 ORTHO05D006539 6.7e-308 1060.4 865 63.4
BraA10t43621Z Brassica rapa HOM05D005244 ORTHO05D006539 2.6e-307 1058.5 865 63.2
CDE05G2480 Ceratophyllum demersum HOM05D005244 ORTHO05D006539 1.1e-302 1043.1 826 63.6
Glyma.08G360000 Glycine max HOM05D005244 ORTHO05D006539 2.8e-298 1028.5 674 75.7
Oeu021241.1 Olea europaea HOM05D005244 ORTHO05D006539 9.5e-278 960.3 714 69.5
AUR62027963 Chenopodium quinoa HOM05D005244 ORTHO05D006539 1.2e-275 953.4 847 59.9
Zm00001eb240720 Zea mays HOM05D005244 ORTHO05D006539 2.7e-256 889.0 840 53.9
unitig_899.g15185 Utricularia gibba HOM05D005244 ORTHO05D006539 1.7e-234 816.6 800 55.8
A10p16080 Brassica napus HOM05D005244 ORTHO05D006539 2.3e-231 806.2 801 55.2
HPP92_015784 Vanilla planifolia HOM05D005244 ORTHO05D006539 2.5e-230 802.7 809 54.4
Hund19348 Selenicereus undatus HOM05D005244 ORTHO05D006539 1.3e-223 780.4 795 53.5
Mapoly0125s0017 Marchantia polymorpha HOM05D005244 ORTHO05D006539 7.0e-204 714.9 812 45.7
Pp3c14_21030 Physcomitrium patens HOM05D005244 ORTHO05D006539 5.5e-201 705.3 808 45.9
SMO367G0058 Selaginella moellendorffii HOM05D005244 ORTHO05D006539 2.2e-197 693.3 698 49.3
CARHR271920 Cardamine hirsuta HOM05D005244 ORTHO05D006539 3.4e-182 642.9 388 81.4
HPP92_015795 Vanilla planifolia HOM05D005244 ORTHO05D006539 3.8e-178 629.4 586 56.7
SalBow5G4830 Salvia bowleyana HOM05D005244 ORTHO05D006539 3.2e-172 609.8 495 63.8
ClCG03G011630 Citrullus lanatus HOM05D005244 ORTHO05D006539 3.5e-171 606.3 500 62.8
Sed0028124 Sechium edule HOM05D005244 ORTHO05D006539 6.8e-167 592.0 501 61.9
Cpa.g.sc91.77 Carica papaya HOM05D005244 ORTHO05D006539 4.9e-157 559.3 329 85.1
Sed0013671 Sechium edule HOM05D005244 ORTHO05D006539 1.7e-154 550.8 486 61.3
Sed0023758 Sechium edule HOM05D005244 ORTHO05D006539 5.2e-151 539.3 325 82.5
HPP92_015814 Vanilla planifolia HOM05D005244 ORTHO05D006539 2.1e-136 490.7 586 48.0
Cpa.g.sc91.76 Carica papaya HOM05D005244 ORTHO05D006539 2.0e-134 484.2 343 71.4
ClCG03G011620 Citrullus lanatus HOM05D005244 ORTHO05D006539 6.7e-122 442.6 324 71.9
SHI03158 Sapria himalayana HOM05D005244 ORTHO05D006539 6.7e-106 389.4 349 60.2
CBR_g983 Chara braunii HOM05D005244 ORTHO05D006539 4.3e-105 386.7 825 31.4
CBR_g22899 Chara braunii HOM05D005244 ORTHO05D006539 6.3e-104 382.9 766 32.9
HPP92_015817 Vanilla planifolia HOM05D005244 ORTHO05D006539 1.5e-97 361.7 608 38.3
Lalb_Chr22g0361681 Lupinus albus HOM05D005244 ORTHO05D006539 2.2e-88 331.3 362 52.8
SEGI_37412 Sequoiadendron giganteum HOM05D005244 ORTHO05D006539 3.3e-81 307.4 221 69.7
Os02g0469200 Oryza sativa ssp. japonica HOM05D005244 ORTHO05D006539 1.1e-71 275.8 314 47.8
Duzib170G1117 Durio zibethinus HOM05D005244 ORTHO05D006539 1.6e-70 271.9 161 79.5
Os03g0570200 Oryza sativa ssp. japonica HOM05D005244 ORTHO05D006539 5.7e-65 253.4 255 52.5
MCO06G232 Micromonas commoda HOM05D005244 ORTHO05D006539 4.9e-64 250.4 800 26.9
QL01p000012 Quercus lobata HOM05D005244 ORTHO05D006539 1.3e-61 242.3 224 59.4
SalBow7G2907 Salvia bowleyana HOM05D005244 ORTHO05D006539 1.2e-54 219.2 138 75.4
SalBow8G4401 Salvia bowleyana HOM05D005244 ORTHO05D006539 1.3e-53 215.7 138 73.9
MBI16_g00817_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 6.8e-50 203.4 265 47.9
SalBow6G0925 Salvia bowleyana HOM05D005244 ORTHO05D006539 4.4e-49 200.7 174 59.8
Zm00001eb016210 Zea mays HOM05D005244 ORTHO05D006539 4.9e-48 197.2 155 61.9
Zm00001eb357680 Zea mays HOM05D005244 ORTHO05D006539 2.4e-47 194.9 124 71.0
Zm00001eb270590 Zea mays HOM05D005244 ORTHO05D006539 7.0e-47 193.4 119 73.1
Zm00001eb175510 Zea mays HOM05D005244 ORTHO05D006539 4.6e-46 190.7 123 70.7
Cre16.g680450 Chlamydomonas reinhardtii HOM05D005244 ORTHO05D006539 6.6e-45 186.8 839 24.4
HPP92_015815 Vanilla planifolia HOM05D005244 ORTHO05D006539 8.6e-45 186.4 218 48.6
SalBow2G0201 Salvia bowleyana HOM05D005244 ORTHO05D006539 4.4e-41 174.1 110 76.4
Zm00001eb035880 Zea mays HOM05D005244 ORTHO05D006539 1.2e-30 139.4 89 69.7
Zm00001eb063080 Zea mays HOM05D005244 ORTHO05D006539 1.6e-30 139.0 90 68.9
HPP92_015816 Vanilla planifolia HOM05D005244 ORTHO05D006539 6.0e-30 137.1 85 72.9
HanXRQChr14g0448901 Helianthus annuus HOM05D005244 ORTHO05D006539 4.7e-27 127.5 99 62.6
HPP92_015796 Vanilla planifolia HOM05D005244 ORTHO05D006539 8.4e-24 116.7 218 37.2
SHI03161 Sapria himalayana HOM05D005244 ORTHO05D006539 7.8e-22 110.2 84 66.7
MBI16_g00818_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 3.1e-18 98.2 74 67.6
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 5.3e-18 97.4 68 66.2
Lsat_1_v5_gn_1_86520 Lactuca sativa HOM05D005244 ORTHO05D029965 1.1e-15 89.7 52 80.8
Lsat_1_v5_gn_8_145740 Lactuca sativa HOM05D005244 ORTHO05D006780 1.6e-14 85.9 49 83.7
MELO3C028251.2 Cucumis melo HOM05D005244 ORTHO05D006539 3.6e-11 74.7 60 60.0
Lsat_1_v5_gn_3_57281 Lactuca sativa HOM05D003275 ORTHO05D006539 1.8e-10 72.4 51 72.5
Lsat_1_v5_gn_4_83721 Lactuca sativa HOM05D000104 ORTHO05D008354 9.0e-10 70.1 60 61.7
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 2.0e-09 68.9 47 68.1
Hma1.2p1_0394F.1_g143220 Hydrangea macrophylla HOM05D005244 ORTHO05D006539 4.5e-09 67.8 35 94.3
CiPaw.07G231500 Carya illinoinensis HOM05D005244 ORTHO05D006539 7.6e-09 67.0 35 94.3
Aa31LG2G4490 Aethionema arabicum HOM05D007118 ORTHO05D008957 1.1e-07 63.2 403 21.6
Lj5g0018939 Lotus japonicus HOM05D005244 ORTHO05D006539 1.1e-07 63.2 41 75.6
Carub.0005s0727 Capsella rubella HOM05D007118 ORTHO05D008957 7.1e-07 60.5 412 21.1
Cpa.g.sc14.37 Carica papaya HOM05D007118 ORTHO05D008957 1.6e-06 59.3 243 23.0
Lju41C25G1 Lonicera japonica HOM05D007118 ORTHO05D008957 1.6e-06 59.3 243 22.6
DCAR_011156 Daucus carota HOM05D007118 ORTHO05D008957 2.1e-06 58.9 181 27.1
HanXRQChr14g0449321 Helianthus annuus HOM05D007118 ORTHO05D008957 2.7e-06 58.5 234 23.5
Zm00001eb385570 Zea mays HOM05D007118 ORTHO05D008957 2.7e-06 58.5 235 25.5
AT3G28720 Arabidopsis thaliana HOM05D007118 ORTHO05D008957 3.5e-06 58.2 407 22.6
CAN.G206.124 Capsicum annuum HOM05D007118 ORTHO05D008957 4.6e-06 57.8 244 20.9
Os06g0584200 Oryza sativa ssp. japonica HOM05D007118 ORTHO05D008957 4.6e-06 57.8 180 26.7
AUR62016223 Chenopodium quinoa HOM05D004819 ORTHO05D005654 6.0e-06 57.4 196 24.0
TPR.G4266 Trifolium pratense HOM05D007118 ORTHO05D008957 7.9e-06 57.0 237 22.8


User provided reference genes

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