Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 8.0e-206 720.3 394 100.0
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 9.4e-98 361.3 386 59.6
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 5.0e-59 232.6 407 42.0
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 7.5e-55 218.8 422 42.9
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.9e-53 214.2 216 56.0
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 2.3e-51 207.2 193 64.2
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 8.6e-51 205.3 419 38.9
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 1.9e-50 204.1 179 64.2
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 2.5e-50 203.8 407 39.6
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 1.1e-48 198.4 164 67.7
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 2.4e-48 197.2 189 61.9
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 4.0e-48 196.4 179 62.0
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 2.6e-47 193.7 398 38.7
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 3.4e-47 193.4 188 59.0
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 4.4e-47 193.0 411 39.2
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 4.4e-47 193.0 178 59.0
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 7.6e-47 192.2 412 37.4
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.7e-46 191.0 198 56.6
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 2.2e-46 190.7 412 37.4
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 6.4e-46 189.1 422 37.2
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 8.4e-46 188.7 199 55.3
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 7.1e-45 185.7 191 55.5
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 1.2e-44 184.9 208 54.3
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 4.6e-44 183.0 188 56.4
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 1.3e-43 181.4 394 37.1
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 2.3e-43 180.6 387 38.8
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 3.0e-43 180.3 208 55.3
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 3.9e-43 179.9 185 58.4
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 3.9e-43 179.9 201 51.2
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.9e-43 179.9 182 53.8
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 5.1e-43 179.5 231 48.5
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 8.7e-43 178.7 182 53.8
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.9e-42 177.6 197 57.4
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 1.9e-42 177.6 194 57.7
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 4.3e-42 176.4 194 53.1
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 5.6e-42 176.0 181 54.7
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 7.3e-42 175.6 392 37.0
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 9.6e-42 175.3 225 48.0
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 9.6e-42 175.3 401 35.9
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.2e-41 174.9 179 54.7
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 1.6e-41 174.5 194 57.2
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 1.6e-41 174.5 183 56.3
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.1e-41 174.1 194 57.2
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.1e-41 174.1 194 57.2
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.1e-41 174.1 194 57.2
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.8e-41 173.7 194 56.7
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 1.1e-40 171.8 408 36.5
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 1.8e-40 171.0 225 48.4
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 4.0e-40 169.9 194 53.6
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 5.3e-40 169.5 193 53.4
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 5.3e-40 169.5 193 53.4
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 1.2e-39 168.3 192 57.8
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.6e-39 167.2 192 55.2
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 3.4e-39 166.8 181 53.6
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 3.4e-39 166.8 225 47.1
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.3e-38 164.9 183 50.3
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 2.9e-38 163.7 186 53.2
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 3.8e-38 163.3 152 61.8
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 2.4e-37 160.6 193 48.2
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 3.2e-37 160.2 192 51.6
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 5.4e-37 159.5 192 51.6
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 7.1e-37 159.1 212 42.9
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 7.1e-37 159.1 178 47.2
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 2.7e-36 157.1 209 45.9
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 3.5e-36 156.8 386 33.9
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 4.6e-36 156.4 180 52.2
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 1.0e-35 155.2 127 66.1
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 3.9e-35 153.3 176 50.0
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 3.9e-35 153.3 387 33.6
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 3.3e-34 150.2 197 46.2
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 3.3e-34 150.2 141 57.4
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 9.6e-34 148.7 175 52.0
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.3e-33 148.3 399 32.3
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 1.3e-33 148.3 183 50.8
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 1.6e-33 147.9 143 55.9
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 6.2e-33 146.0 188 48.9
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 8.1e-33 145.6 433 34.6
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 1.1e-32 145.2 192 48.4
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 9.0e-32 142.1 238 41.2
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 1.2e-31 141.7 201 46.3
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 2.0e-31 141.0 220 40.5
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 2.6e-31 140.6 185 48.1
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 2.6e-31 140.6 196 48.0
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 9.9e-31 138.7 190 45.8
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 2.2e-30 137.5 185 47.0
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 2.2e-30 137.5 202 47.5
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 2.9e-30 137.1 190 47.4
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 6.4e-30 136.0 185 45.9
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 6.4e-30 136.0 190 45.8
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 8.4e-30 135.6 184 48.4
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 1.9e-29 134.4 201 42.3
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 4.2e-29 133.3 181 44.2
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 5.4e-29 132.9 190 45.8
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 7.1e-29 132.5 396 31.1
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 7.1e-29 132.5 178 48.3
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 6.0e-28 129.4 190 46.8
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 1.0e-27 128.6 150 46.7
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 1.0e-27 128.6 394 30.2
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.3e-27 127.5 177 48.0
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 3.0e-27 127.1 187 43.9
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 3.0e-27 127.1 223 41.3
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 2.5e-26 124.0 169 43.2
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 3.3e-26 123.6 194 40.2
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 4.3e-26 123.2 186 44.6
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 9.6e-26 122.1 185 41.6
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 2.1e-25 120.9 206 41.7
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 3.7e-25 120.2 201 41.8
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 6.2e-25 119.4 152 44.1
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 2.4e-24 117.5 189 43.4
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.4e-24 117.5 180 42.8
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 1.3e-22 111.7 190 36.8
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 2.9e-22 110.5 116 54.3
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 3.8e-22 110.2 167 38.3
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 4.9e-22 109.8 172 40.1
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 6.4e-22 109.4 161 45.3
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 1.1e-21 108.6 178 41.6
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 1.4e-21 108.2 179 43.6
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 1.4e-21 108.2 211 37.9
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 1.9e-21 107.8 186 42.5
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 1.9e-21 107.8 201 38.3
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 2.5e-21 107.5 102 56.9
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 4.2e-21 106.7 294 30.6
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 2.7e-20 104.0 171 40.9
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 4.6e-20 103.2 198 40.4
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 4.6e-20 103.2 173 41.6
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 6.0e-20 102.8 196 34.7
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 1.3e-19 101.7 161 37.3
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.3e-19 101.7 143 39.9
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.3e-19 101.7 177 40.1
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 1.8e-19 101.3 143 39.2
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 2.3e-19 100.9 202 37.1
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 1.5e-18 98.2 77 66.2
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.5e-18 98.2 143 37.8
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 7.4e-18 95.9 190 39.5
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 7.4e-18 95.9 177 38.4
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 9.6e-18 95.5 148 35.8
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 1.3e-17 95.1 98 51.0
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 2.8e-17 94.0 181 34.8
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 3.7e-17 93.6 147 34.7
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.7e-17 93.6 162 41.4
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.8e-16 91.3 181 34.3
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.8e-16 91.3 181 34.8
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 1.8e-16 91.3 186 34.9
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 1.3e-14 85.1 184 38.6
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 1.7e-14 84.7 149 32.9
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.1e-13 82.0 181 33.7
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 3.2e-13 80.5 210 31.9
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 2.1e-12 77.8 184 32.6
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 6.0e-12 76.3 156 33.3
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 6.7e-11 72.8 149 36.2
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 8.7e-11 72.4 141 34.8
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 8.7e-11 72.4 189 31.7
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 1.1e-08 65.5 202 25.7
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 2.6e-07 60.8 192 30.7
Mapoly0014s0172 Marchantia polymorpha HOM05D029953 ORTHO05D009567 5.9e-07 59.7 214 29.4
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 1.3e-06 58.5 192 27.6
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 1.7e-06 58.2 192 27.1
Pp3c1_25250 Physcomitrium patens HOM05D029953 ORTHO05D005170 2.9e-06 57.4 203 25.1
SGA_v2.0_scaffold592G53090 Striga asiatica HOM05D008931 ORTHO05D010171 3.8e-06 57.0 84 45.2


User provided reference genes

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