Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 2.9e-280 968.0 518 100.0
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 5.0e-256 887.5 519 93.4
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 4.2e-178 628.6 478 73.8
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 6.7e-136 488.4 499 58.3
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 2.9e-131 473.0 505 59.8
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 3.8e-131 472.6 519 56.5
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 7.2e-130 468.4 505 56.2
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 2.1e-129 466.8 511 56.6
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 4.7e-129 465.7 509 57.2
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 4.4e-127 459.1 512 58.2
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 7.4e-127 458.4 504 55.8
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 2.8e-126 456.4 515 56.1
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.4e-125 454.1 507 55.4
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.1e-125 453.0 515 55.9
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.0e-123 448.0 505 55.2
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 5.0e-123 445.7 504 56.9
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 6.5e-123 445.3 504 56.0
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.2e-121 441.0 505 53.7
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.6e-121 439.5 504 54.6
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.0e-120 438.0 505 53.5
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 5.2e-120 435.6 504 53.2
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 2.6e-119 433.3 502 56.2
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 4.4e-119 432.6 500 53.0
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.2e-118 430.3 518 54.4
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.2e-118 430.3 516 54.7
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.8e-117 427.2 508 54.1
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 4.5e-116 422.5 507 55.2
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 3.2e-114 416.4 453 58.7
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.7e-113 413.3 504 53.0
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.4e-112 411.0 506 54.5
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 2.0e-111 407.1 513 50.7
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 7.5e-111 405.2 503 52.7
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 1.3e-110 404.4 535 49.5
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 2.2e-110 403.7 505 54.9
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.4e-109 401.0 511 49.5
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 4.5e-108 396.0 504 50.4
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 5.9e-108 395.6 535 48.6
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.3e-107 394.4 506 51.2
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.7e-107 394.0 505 52.5
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 5.0e-107 392.5 498 52.0
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 2.5e-106 390.2 510 50.8
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 4.2e-106 389.4 537 48.0
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 3.6e-105 386.3 503 52.1
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 8.0e-105 385.2 515 50.5
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.8e-104 384.0 511 49.7
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.2e-103 381.3 511 48.9
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 4.4e-103 379.4 508 48.8
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 3.7e-102 376.3 445 55.3
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 9.2e-101 371.7 423 56.7
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 2.5e-98 363.6 509 48.5
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 5.6e-98 362.5 510 49.0
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 4.7e-97 359.4 509 49.3
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 5.2e-96 355.9 535 45.6
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.5e-95 354.4 505 46.1
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 3.4e-95 353.2 515 47.8
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.7e-95 352.4 506 45.1
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 1.3e-94 351.3 508 47.2
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 3.7e-94 349.7 509 48.3
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 8.3e-94 348.6 433 52.0
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 1.8e-93 347.4 501 50.7
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 1.2e-92 344.7 443 52.4
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.2e-92 344.7 509 47.3
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 2.0e-92 344.0 515 46.6
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 3.5e-92 343.2 509 47.2
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 1.3e-91 341.3 380 52.6
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.7e-91 340.9 506 44.5
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 3.0e-91 340.1 514 46.1
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 1.1e-90 338.2 503 45.5
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 4.3e-90 336.3 518 45.8
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 5.2e-88 329.3 504 45.0
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.3e-86 324.7 515 43.7
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.2e-86 323.9 508 45.1
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 6.4e-86 322.4 511 44.6
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 4.1e-85 319.7 506 44.9
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 4.1e-85 319.7 496 46.0
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 7.0e-85 318.9 507 43.6
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 8.6e-83 312.0 508 44.7
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 1.1e-82 311.6 475 48.2
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.1e-82 311.6 509 43.8
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 7.3e-82 308.9 402 47.5
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 7.3e-82 308.9 498 47.2
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 2.8e-81 307.0 523 43.4
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.4e-80 304.7 505 45.1
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 6.8e-80 302.4 512 42.8
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 1.2e-79 301.6 526 42.8
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 3.7e-78 296.6 521 42.8
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 3.7e-78 296.6 499 42.7
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 3.2e-77 293.5 512 42.4
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 2.1e-76 290.8 479 43.0
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 6.6e-75 285.8 503 44.5
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 1.9e-74 284.3 533 41.5
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 4.3e-74 283.1 518 44.0
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 5.6e-74 282.7 509 44.6
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 1.6e-73 281.2 518 43.4
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 2.1e-73 280.8 474 46.0
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 8.1e-73 278.9 535 40.9
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 8.1e-73 278.9 507 39.6
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 3.1e-72 276.9 496 43.5
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 9.9e-71 271.9 523 42.3
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 2.9e-70 270.4 536 40.9
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 4.1e-69 266.5 467 40.9
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 7.1e-69 265.8 476 44.1
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 9.2e-69 265.4 457 42.5
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 3.9e-67 260.0 435 42.3
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 5.1e-67 259.6 442 43.9
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 5.1e-67 259.6 443 43.6
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 6.6e-67 259.2 433 43.0
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 5.6e-66 256.1 443 43.1
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 7.3e-66 255.8 433 42.5
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 1.2e-65 255.0 431 43.4
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.2e-65 255.0 451 41.7
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.6e-65 254.6 499 40.5
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.6e-65 254.6 447 43.6
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 2.4e-64 250.8 427 42.4
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 1.5e-63 248.1 499 39.9
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 2.6e-63 247.3 426 43.9
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 2.4e-61 240.7 448 39.1
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 3.2e-61 240.4 448 38.8
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 4.2e-61 240.0 448 38.8
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.5e-60 236.9 431 41.1
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.3e-59 235.0 517 39.5
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 5.6e-58 229.6 453 40.0
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 1.6e-57 228.0 455 39.6
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 3.1e-56 223.8 457 41.1
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 3.8e-54 216.9 459 40.5
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 6.4e-54 216.1 479 38.4
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.9e-53 214.5 529 36.7
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 4.2e-53 213.4 403 40.7
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 4.2e-53 213.4 372 42.2
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.3e-51 208.4 256 50.8
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.6e-49 201.4 387 39.3
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.8e-49 200.7 514 36.0
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 3.1e-48 197.2 448 39.7
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 3.1e-48 197.2 445 39.6
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 1.5e-47 194.9 366 38.3
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.6e-47 194.1 501 35.7
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 9.9e-47 192.2 365 40.0
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.4e-45 187.6 333 40.5
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.2e-45 187.2 478 33.7
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 9.3e-45 185.7 508 36.0
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 5.5e-37 159.8 203 51.7
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 2.7e-36 157.5 145 61.4
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.5e-34 151.8 454 33.5
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.5e-34 151.0 181 48.1
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 6.3e-33 146.4 115 66.1
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 8.2e-33 146.0 500 32.8
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.5e-31 140.2 140 60.0
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.3e-30 138.7 305 36.4
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 1.7e-30 138.3 137 57.7
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 1.7e-30 138.3 439 30.5
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 2.9e-30 137.5 114 69.3
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 5.0e-30 136.7 221 45.7
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 4.5e-23 113.6 288 37.8
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 1.3e-22 112.1 190 43.7
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 1.3e-22 112.1 532 28.4
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 5.1e-19 100.1 519 27.2
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 8.2e-17 92.8 200 39.0
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 1.4e-16 92.0 232 32.8
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.2e-15 89.0 304 28.6
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 2.9e-14 84.3 219 31.1
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 2.9e-14 84.3 221 33.5
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 8.5e-14 82.8 181 33.1
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.4e-13 82.0 130 40.0
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 1.4e-13 82.0 221 34.4
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.5e-13 81.3 382 29.8
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 7.2e-13 79.7 407 28.7
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.1e-12 78.2 153 36.6
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 4.7e-12 77.0 58 63.8
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 3.9e-11 73.9 72 51.4
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 1.5e-10 72.0 220 30.0
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.3e-10 70.9 454 26.7
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 9.7e-10 69.3 194 35.1
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 2.2e-09 68.2 48 66.7
Glyma.03G074233 Glycine max HOM05D003987 ORTHO05D004532 1.4e-08 65.5 123 36.6
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 1.4e-08 65.5 68 51.5
FAN08G1429 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.0e-07 61.6 94 44.7
unitig_26.g9098 Utricularia gibba HOM05D003987 ORTHO05D004532 2.9e-06 57.8 127 37.8


User provided reference genes

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