Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 5.6e-201 704.1 371 100.0
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 7.3e-193 677.2 371 94.9
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 4.6e-155 551.6 377 78.5
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 1.9e-153 546.2 377 78.5
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 1.2e-147 526.9 376 76.3
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 5.5e-132 474.9 379 70.2
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 2.0e-129 466.5 378 67.7
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 3.2e-124 449.1 377 65.5
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 9.4e-124 447.6 321 72.6
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 1.2e-123 447.2 378 64.6
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 4.4e-121 438.7 383 62.7
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 7.5e-121 438.0 378 63.2
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 9.7e-121 437.6 378 63.5
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 1.8e-119 433.3 381 63.5
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 1.8e-119 433.3 361 64.5
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 2.4e-119 433.0 375 63.7
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 2.7e-118 429.5 378 62.2
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 2.7e-118 429.5 376 62.8
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 8.5e-117 424.5 386 62.4
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 3.2e-116 422.5 380 61.8
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 1.2e-115 420.6 386 63.0
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 1.6e-115 420.2 377 60.7
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.3e-114 416.4 397 60.7
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 1.6e-110 403.7 381 60.6
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.0e-110 403.3 386 60.1
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 3.5e-110 402.5 388 60.1
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 2.2e-109 399.8 377 58.6
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 1.9e-108 396.7 382 60.2
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 3.2e-108 396.0 382 59.2
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 1.4e-106 390.6 385 57.4
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 8.8e-106 387.9 322 63.7
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 1.5e-105 387.1 371 56.6
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 2.0e-105 386.7 360 60.3
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 7.5e-105 384.8 377 56.5
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 1.3e-104 384.0 327 65.4
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 2.8e-104 382.9 380 56.8
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 6.3e-104 381.7 347 60.8
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 1.1e-103 380.9 325 61.2
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 5.9e-102 375.2 378 55.8
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 1.3e-101 374.0 382 57.6
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 2.8e-99 366.3 382 54.7
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 4.0e-98 362.5 351 56.7
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 6.8e-98 361.7 380 54.7
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 1.2e-97 360.9 332 60.5
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 1.5e-97 360.5 405 54.1
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 3.4e-97 359.4 377 54.9
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 2.9e-96 356.3 345 58.0
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 3.7e-96 355.9 331 57.4
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 1.1e-95 354.4 326 58.0
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 2.4e-95 353.2 343 58.0
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 5.4e-95 352.1 336 57.1
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 1.3e-93 347.4 376 51.9
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 2.5e-92 343.2 328 58.5
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 3.3e-92 342.8 376 54.8
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 5.6e-92 342.0 376 51.6
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 1.6e-91 340.5 377 53.1
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 2.1e-91 340.1 371 53.4
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 8.0e-91 338.2 326 57.4
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 1.0e-90 337.8 385 51.4
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 1.4e-90 337.4 371 51.2
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 1.4e-90 337.4 352 54.5
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 2.3e-90 336.7 334 54.8
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 3.1e-90 336.3 376 50.3
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 4.0e-90 335.9 382 50.8
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 2.0e-89 333.6 371 51.2
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 2.0e-89 333.6 377 50.4
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 2.0e-89 333.6 377 51.2
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 3.4e-89 332.8 378 50.0
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 4.4e-89 332.4 372 51.6
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 5.8e-89 332.0 385 50.9
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 2.9e-88 329.7 364 51.9
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 1.9e-87 327.0 373 53.1
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 2.0e-86 323.6 373 49.3
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 2.0e-86 323.6 376 49.5
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 1.0e-85 321.2 382 48.7
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 3.0e-85 319.7 411 46.2
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 3.9e-85 319.3 384 49.0
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 6.6e-85 318.5 376 48.9
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 3.6e-83 312.8 353 54.7
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 2.3e-82 310.1 332 53.3
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 4.0e-82 309.3 337 51.0
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 1.5e-81 307.4 374 48.9
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 8.3e-80 301.6 351 50.4
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 1.0e-77 294.7 384 46.4
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 1.7e-77 293.9 384 46.4
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 3.0e-77 293.1 384 45.8
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 3.8e-72 276.2 389 44.0
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 1.9e-71 273.9 258 57.8
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 3.2e-71 273.1 373 44.8
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 5.1e-69 265.8 287 50.9
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 5.8e-65 252.3 332 43.7
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 1.3e-64 251.1 156 81.4
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 7.1e-63 245.4 383 40.5
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 3.5e-62 243.0 309 46.6
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 7.1e-55 218.8 356 40.2
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 9.6e-52 208.4 139 74.1
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 1.6e-51 207.6 370 38.6
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 1.1e-50 204.9 326 40.8
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 1.9e-47 194.1 245 48.6
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 4.2e-47 193.0 212 50.9
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 3.9e-45 186.4 283 44.9
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.2e-41 174.9 120 70.8
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 1.5e-41 174.5 189 49.2
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 4.5e-41 172.9 337 33.5
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 6.0e-38 162.5 340 35.0
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 2.2e-32 144.1 173 52.0
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 3.8e-32 143.3 128 66.4
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 5.0e-32 142.9 323 31.3
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 8.5e-32 142.1 323 31.3
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 1.3e-29 134.8 168 49.4
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 2.6e-25 120.6 97 59.8
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 4.6e-22 109.8 417 27.1
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 2.2e-19 100.9 236 34.3
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 1.2e-17 95.1 102 52.0
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 1.7e-11 74.7 62 61.3
Lsat_1_v5_gn_1_108300 Lactuca sativa HOM05D000747 ORTHO05D015226 3.7e-11 73.6 108 44.4
unitig_21.g21014 Utricularia gibba HOM05D006045 ORTHO05D007678 1.6e-06 58.2 74 44.6
Dinv35575 Davidia involucrata HOM05D006045 ORTHO05D007678 2.7e-06 57.4 81 43.2


User provided reference genes

Program Settings