Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20785 Corylus avellana HOM05D005843 ORTHO05D007781 3.7e-299 1030.8 525 100.0
CiPaw.09G192200 Carya illinoinensis HOM05D005843 ORTHO05D007781 1.7e-248 862.4 525 82.7
QL06p005681 Quercus lobata HOM05D005843 ORTHO05D007781 1.8e-237 825.9 524 79.8
QL11p021821 Quercus lobata HOM05D005843 ORTHO05D007781 6.8e-237 823.9 566 75.6
GSVIVG01034179001 Vitis vinifera HOM05D005843 ORTHO05D007781 3.2e-218 761.9 525 72.6
Atru.chr8.1969 Acer truncatum HOM05D005843 ORTHO05D007781 1.3e-216 756.5 525 73.1
RcHm_v2.0_Chr3g0466751 Rosa chinensis HOM05D005843 ORTHO05D007781 7.6e-212 740.7 526 72.1
FAN14G2296 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.7e-211 739.6 525 70.7
Prupe.6G254200 Prunus persica HOM05D005843 ORTHO05D007781 1.9e-210 736.1 525 72.0
FAN05G5617 Fragaria x ananassa HOM05D005843 ORTHO05D007781 2.4e-210 735.7 525 70.3
TAR633G1568 Trochodendron aralioides HOM05D005843 ORTHO05D007781 3.2e-210 735.3 526 71.7
Manes.17G047400 Manihot esculenta HOM05D005843 ORTHO05D007781 1.3e-206 723.4 525 69.1
MD12G1140900 Malus domestica HOM05D005843 ORTHO05D007781 8.1e-206 720.7 525 70.1
MD04G1127500 Malus domestica HOM05D005843 ORTHO05D007781 1.7e-203 713.0 525 70.1
Eucgr.K03141 Eucalyptus grandis HOM05D005843 ORTHO05D007781 2.5e-202 709.1 525 67.2
Ca_26026_v3 Cicer arietinum L. HOM05D005843 ORTHO05D007781 4.2e-202 708.4 525 65.9
Medtr7g060680 Medicago truncatula HOM05D005843 ORTHO05D007781 5.5e-202 708.0 526 65.8
CANSAT35G1785 Cannabis sativa HOM05D005843 ORTHO05D007781 2.1e-201 706.1 536 68.5
Thecc.05G040300 Theobroma cacao HOM05D005843 ORTHO05D007781 2.1e-201 706.1 525 69.5
Duzib128G1977 Durio zibethinus HOM05D005843 ORTHO05D007781 4.6e-201 704.9 543 67.8
CsaV3_4G024980 Cucumis sativus L. HOM05D005843 ORTHO05D007781 2.3e-200 702.6 525 67.0
TWI38G1602 Tripterygium wilfordii HOM05D005843 ORTHO05D007781 2.5e-199 699.1 525 66.9
MELO3C003129.2 Cucumis melo HOM05D005843 ORTHO05D007781 5.7e-199 698.0 525 66.9
FAN02G2362 Fragaria x ananassa HOM05D005843 ORTHO05D007781 2.1e-198 696.0 556 65.1
Gohir.A09G156300 Gossypium hirsutum HOM05D005843 ORTHO05D007781 3.7e-198 695.3 525 66.9
TPR.G23290 Trifolium pratense HOM05D005843 ORTHO05D007781 4.8e-198 694.9 525 64.2
Hma1.2p1_1513F.1_g288040 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 8.2e-198 694.1 525 67.0
Gorai.006G173000 Gossypium raimondii HOM05D005843 ORTHO05D007781 2.4e-197 692.6 525 66.9
Gohir.D09G151700 Gossypium hirsutum HOM05D005843 ORTHO05D007781 6.9e-197 691.0 525 66.7
Lalb_Chr19g0125371 Lupinus albus HOM05D005843 ORTHO05D007781 9.0e-197 690.6 525 65.3
Nn8g39667 Nelumbo nucifera HOM05D005843 ORTHO05D007781 1.0e-195 687.2 526 66.2
Cpa.g.sc332.7 Carica papaya HOM05D005843 ORTHO05D007781 2.9e-195 685.6 525 66.1
Lj3C968G10 Lonicera japonica HOM05D005843 ORTHO05D007781 4.2e-194 681.8 564 63.3
Psat5g101400 Pisum sativum HOM05D005843 ORTHO05D007781 4.2e-194 681.8 525 63.8
ClCG04G008190 Citrullus lanatus HOM05D005843 ORTHO05D007781 5.5e-194 681.4 525 66.1
Glyma.07G131100 Glycine max HOM05D005843 ORTHO05D007781 1.6e-193 679.9 525 65.3
FAN09G3893 Fragaria x ananassa HOM05D005843 ORTHO05D007781 4.6e-193 678.3 535 66.4
PGR004G0455 Punica granatum HOM05D005843 ORTHO05D007781 1.3e-192 676.8 525 66.1
VMungo1383G2898 Vigna mungo HOM05D005843 ORTHO05D007781 1.8e-192 676.4 525 65.0
Oeu024347.1 Olea europaea HOM05D005843 ORTHO05D007781 6.7e-192 674.5 525 63.6
Cc06_g02690 Coffea canephora HOM05D005843 ORTHO05D007781 5.7e-191 671.4 525 63.4
arahy.Tifrunner.gnm1.ann1.JAB43P Arachis hypogaea HOM05D005843 ORTHO05D007781 2.8e-190 669.1 526 64.4
PSO339G2649 Papaver somniferum HOM05D005843 ORTHO05D007781 5.3e-189 664.8 526 64.6
PSO151G0180 Papaver somniferum HOM05D005843 ORTHO05D007781 5.9e-188 661.4 525 64.4
Sc20g0004950 Simmondsia chinensis HOM05D005843 ORTHO05D007781 1.0e-187 660.6 525 63.2
Phvul.008G100900 Phaseolus vulgaris HOM05D005843 ORTHO05D007781 1.3e-187 660.2 525 64.0
Hund24578 Selenicereus undatus HOM05D005843 ORTHO05D007781 1.7e-187 659.8 525 63.0
Sed0019468 Sechium edule HOM05D005843 ORTHO05D007781 6.5e-187 657.9 497 66.8
Rhsim05G0192300 Rhododendron simsii HOM05D005843 ORTHO05D007781 8.5e-187 657.5 526 66.0
Aqoxy6G01388 Aquilegia oxysepala HOM05D005843 ORTHO05D007781 1.2e-185 653.7 525 64.4
DCAR_014847 Daucus carota HOM05D005843 ORTHO05D007781 1.7e-182 643.3 525 61.7
Thhalv10013300m.g Eutrema salsugineum HOM05D005843 ORTHO05D007781 4.8e-182 641.7 528 62.9
EL10Ac3g07255 Beta vulgaris HOM05D005843 ORTHO05D007781 4.1e-181 638.6 527 62.2
Migut.J00332 Erythranthe guttata HOM05D005843 ORTHO05D007781 1.5e-180 636.7 525 62.7
BolC9t60149H Brassica oleracea HOM05D005843 ORTHO05D007781 1.3e-179 633.6 530 62.1
Nitab4.5_0001190g0070 Nicotiana tabacum HOM05D005843 ORTHO05D007781 1.3e-179 633.6 526 62.2
A10p33250 Brassica napus HOM05D005843 ORTHO05D007781 1.9e-178 629.8 530 61.7
PGSC0003DMG400008911 Solanum tuberosum HOM05D005843 ORTHO05D007781 1.9e-178 629.8 526 62.2
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 2.5e-178 629.4 528 61.9
Sopen09g005490 Solanum pennellii HOM05D005843 ORTHO05D007781 3.2e-178 629.0 528 61.7
THA.LOC104809903 Tarenaya hassleriana HOM05D005843 ORTHO05D007781 4.2e-178 628.6 526 62.4
Carub.0006s0120 Capsella rubella HOM05D005843 ORTHO05D007781 2.7e-177 625.9 532 61.1
CAN.G326.14 Capsicum annuum HOM05D005843 ORTHO05D007781 7.9e-177 624.4 526 62.2
Dinv35609 Davidia involucrata HOM05D005843 ORTHO05D007781 1.5e-175 620.2 440 72.0
ECA238G1173 Erigeron canadensis HOM05D005843 ORTHO05D007781 1.5e-175 620.2 528 60.2
CARHR211000 Cardamine hirsuta HOM05D005843 ORTHO05D007781 4.4e-175 618.6 528 61.0
A03p00670 Brassica napus HOM05D005843 ORTHO05D007781 7.4e-175 617.8 531 61.6
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 9.7e-175 617.5 535 61.5
Sp6g40070 Schrenkiella parvula HOM05D005843 ORTHO05D007781 1.3e-174 617.1 528 60.4
BcaC06g31988 Brassica carinata HOM05D005843 ORTHO05D007781 2.2e-174 616.3 530 60.8
BcaNung05922 Brassica carinata HOM05D005843 ORTHO05D007781 3.7e-174 615.5 528 61.0
Peaxi162Scf00165g01322 Petunia axillaris HOM05D005843 ORTHO05D007781 4.8e-174 615.1 568 57.2
Solyc09g010770.3 Solanum lycopersicum HOM05D005843 ORTHO05D007781 8.2e-174 614.4 526 61.0
SGA_v2.0_scaffold75G24948 Striga asiatica HOM05D005843 ORTHO05D007781 1.4e-173 613.6 525 60.8
AT5G02410 Arabidopsis thaliana HOM05D005843 ORTHO05D007781 1.8e-173 613.2 528 59.5
SalBow3G1829 Salvia bowleyana HOM05D005843 ORTHO05D007781 2.4e-173 612.8 524 60.1
CSS0035027 Camellia sinensis var. sinensis HOM05D005843 ORTHO05D007781 9.1e-173 610.9 475 67.8
Sabra06G0064400 Salix brachista HOM05D005843 ORTHO05D007781 7.7e-172 607.8 535 61.9
AL6G11640 Arabidopsis lyrata HOM05D005843 ORTHO05D007781 1.7e-171 606.7 514 60.7
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 2.2e-171 606.3 526 61.4
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 2.2e-171 606.3 526 61.4
Hma1.2p1_1513F.1_g288030 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 6.5e-171 604.7 474 65.4
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 4.2e-170 602.1 526 61.0
Aa31LG1G22390 Aethionema arabicum HOM05D005843 ORTHO05D007781 2.7e-169 599.4 598 54.7
Glyma.18G179500 Glycine max HOM05D005843 ORTHO05D007781 3.6e-169 599.0 525 59.2
Lsat_1_v5_gn_2_17401 Lactuca sativa HOM05D005843 ORTHO05D007781 8.0e-169 597.8 520 58.7
Actinidia26464 Actinidia chinensis HOM05D005843 ORTHO05D000250 1.4e-168 597.0 452 68.6
HanXRQChr16g0515781 Helianthus annuus HOM05D005843 ORTHO05D007781 6.7e-168 594.7 509 60.3
C09p74160 Brassica napus HOM05D005843 ORTHO05D007781 2.4e-165 586.3 497 62.0
Lj3g0024665 Lotus japonicus HOM05D005843 ORTHO05D007781 1.0e-163 580.9 466 63.5
AUR62030297 Chenopodium quinoa HOM05D005843 ORTHO05D007781 2.2e-163 579.7 606 53.5
HPP92_000805 Vanilla planifolia HOM05D005843 ORTHO05D007781 7.0e-157 558.1 527 54.8
SHI00339 Sapria himalayana HOM05D005843 ORTHO05D007781 1.6e-156 557.0 547 55.0
AUR62015928 Chenopodium quinoa HOM05D005843 ORTHO05D007781 4.5e-148 528.9 528 54.0
FvH4_6g13910 Fragaria vesca HOM05D005843 ORTHO05D007781 8.9e-144 514.6 390 66.9
unitig_26.g9195 Utricularia gibba HOM05D005843 ORTHO05D007781 6.6e-139 498.4 475 57.9
arahy.Tifrunner.gnm1.ann1.HAEF8J Arachis hypogaea HOM05D005843 ORTHO05D007781 1.7e-134 483.8 399 62.4
Pp3c4_12410 Physcomitrium patens HOM05D005843 ORTHO05D007781 1.9e-133 480.3 535 49.9
Dinv37176 Davidia involucrata HOM05D005843 ORTHO05D007781 1.1e-130 471.1 348 67.5
Os04g0503700 Oryza sativa ssp. japonica HOM05D005843 ORTHO05D007781 1.6e-129 467.2 483 50.3
SMO137G0039 Selaginella moellendorffii HOM05D005843 ORTHO05D007781 1.9e-117 427.2 541 44.9
Potri.006G084800 Populus trichocarpa HOM05D005843 ORTHO05D007781 1.2e-113 414.5 327 65.7
AUR62018365 Chenopodium quinoa HOM05D005843 ORTHO05D007781 2.7e-108 396.7 333 62.8
Mapoly0047s0019 Marchantia polymorpha HOM05D005843 ORTHO05D007781 2.7e-108 396.7 540 43.1
ATR0585G056 Amborella trichopoda HOM05D005843 ORTHO05D007781 6.0e-100 369.0 401 50.1
vmacro20152 Vaccinium macrocarpon HOM05D005843 ORTHO05D007781 1.5e-95 354.4 444 48.0
CDE09G0345 Ceratophyllum demersum HOM05D005843 ORTHO05D007781 4.6e-92 342.8 470 44.3
Zm00001eb078080 Zea mays HOM05D005843 ORTHO05D007781 2.9e-86 323.6 341 49.3
BcaC06g31987 Brassica carinata HOM05D005843 ORTHO05D007781 4.8e-81 306.2 337 52.2
Nitab4.5_0002018g0090 Nicotiana tabacum HOM05D005843 ORTHO05D007781 2.2e-78 297.4 264 59.5
SGA_v2.0_scaffold75G24944 Striga asiatica HOM05D005843 ORTHO05D007781 4.2e-77 293.1 442 42.1
A03p00710 Brassica napus HOM05D005843 ORTHO05D007781 4.3e-74 283.1 208 70.2
AagrBONN_evm.TU.Sc2ySwM_117.1914 Anthoceros agrestis HOM05D005843 ORTHO05D007781 1.0e-70 271.9 465 37.4
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 6.5e-70 269.2 389 45.0
TAR636G2087 Trochodendron aralioides HOM05D005843 ORTHO05D007781 7.9e-68 262.3 184 71.7
CBR_g29861 Chara braunii HOM05D005843 ORTHO05D000002 3.3e-58 230.3 359 39.3
Cre01.g041300 Chlamydomonas reinhardtii HOM05D005843 ORTHO05D007781 1.8e-56 224.6 554 31.2
VMungo1309G2290 Vigna mungo HOM05D005843 ORTHO05D007781 1.1e-53 215.3 136 75.0
DCAR_015734 Daucus carota HOM05D005843 ORTHO05D007781 3.6e-44 183.7 136 64.7
TAR636G1000 Trochodendron aralioides HOM05D005843 ORTHO05D007781 2.6e-42 177.6 144 66.0
TAR636G1324 Trochodendron aralioides HOM05D005843 ORTHO05D007781 2.6e-42 177.6 144 66.0
AUR62040681 Chenopodium quinoa HOM05D005843 ORTHO05D007781 6.1e-36 156.4 193 46.1
Haze_26583 Corylus avellana HOM05D005843 ORTHO05D007781 7.8e-31 139.4 521 26.5
VMungo1309G1664 Vigna mungo HOM05D005843 ORTHO05D007781 6.6e-30 136.3 225 39.6
SEGI_06123 Sequoiadendron giganteum HOM05D005843 ORTHO05D007781 1.3e-25 122.1 116 52.6
DCAR_015735 Daucus carota HOM05D005843 ORTHO05D007781 2.0e-23 114.8 60 85.0
TAR636G3605 Trochodendron aralioides HOM05D005843 ORTHO05D007781 4.7e-20 103.6 57 78.9
C03p92170 Brassica napus HOM05D005843 ORTHO05D040940 4.0e-19 100.5 62 77.4
BolC3t21533H Brassica oleracea HOM05D005843 ORTHO05D040940 4.0e-19 100.5 62 77.4
SEGI_08652 Sequoiadendron giganteum HOM05D005843 ORTHO05D000001 5.8e-18 96.7 61 65.6
Hma1.2p1_1611F.1_g293520 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 9.8e-18 95.9 53 77.4
TAR636G0893 Trochodendron aralioides HOM05D005843 ORTHO05D007781 3.5e-15 87.4 65 64.6
BraA10t45356Z Brassica rapa HOM05D005843 ORTHO05D007781 2.5e-13 81.3 65 58.5
SEGI_16582 Sequoiadendron giganteum HOM05D005843 ORTHO05D014789 3.7e-09 67.4 86 44.2


User provided reference genes

Program Settings