Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 9.4e-217 756.5 370 100.0
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 2.3e-210 735.3 370 96.8
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 3.5e-179 631.7 370 84.1
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 3.0e-170 602.1 373 79.9
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 7.3e-169 597.4 374 79.4
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 2.1e-168 595.9 370 79.5
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 2.4e-167 592.4 371 79.0
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 6.9e-167 590.9 371 80.3
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 2.0e-166 589.3 377 77.5
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 3.4e-166 588.6 370 79.7
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 1.7e-165 586.3 372 80.1
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 2.2e-165 585.9 378 77.8
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 2.9e-165 585.5 375 78.1
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 2.9e-165 585.5 374 78.1
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 8.4e-165 583.9 372 78.8
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 3.2e-164 582.0 371 79.8
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 4.2e-164 581.6 370 77.3
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 2.1e-163 579.3 370 78.6
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 1.7e-162 576.2 373 74.8
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 3.0e-162 575.5 370 77.6
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.0e-162 575.5 370 76.8
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 3.9e-162 575.1 369 77.8
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 5.1e-162 574.7 312 85.9
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 6.6e-162 574.3 369 78.3
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 8.7e-162 573.9 369 77.2
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 8.7e-162 573.9 371 75.5
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 5.6e-161 571.2 389 73.8
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 7.3e-161 570.9 371 77.6
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 7.3e-161 570.9 373 77.5
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 9.6e-161 570.5 309 88.0
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 6.2e-160 567.8 362 79.3
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 1.4e-159 566.6 373 75.9
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 9.0e-159 563.9 375 76.0
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 1.5e-158 563.1 370 74.9
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 2.0e-158 562.8 370 75.7
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 2.6e-158 562.4 384 75.0
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 3.4e-158 562.0 370 74.9
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 5.8e-158 561.2 377 74.0
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 9.9e-158 560.5 365 74.8
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 2.2e-157 559.3 373 74.0
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 3.8e-157 558.5 370 74.3
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 4.9e-157 558.1 372 74.7
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 4.9e-157 558.1 370 72.2
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 6.4e-157 557.8 356 75.6
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.1e-156 557.0 319 83.1
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 1.1e-156 557.0 394 71.1
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 2.4e-156 555.8 370 73.8
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 2.4e-156 555.8 360 74.7
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 2.4e-156 555.8 375 74.7
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 4.2e-156 555.1 380 72.9
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 5.4e-156 554.7 370 74.3
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 5.4e-156 554.7 374 74.6
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 9.3e-156 553.9 296 85.1
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 2.1e-155 552.7 369 72.4
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 2.1e-155 552.7 336 80.1
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 2.1e-155 552.7 358 77.1
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 4.6e-155 551.6 355 75.2
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 6.0e-155 551.2 372 73.9
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 7.9e-155 550.8 375 76.8
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 1.0e-154 550.4 356 75.8
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 2.3e-154 549.3 370 73.0
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 6.7e-154 547.7 370 73.0
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 8.7e-154 547.4 370 74.9
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 1.1e-153 547.0 371 73.0
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.1e-153 547.0 370 73.2
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 1.5e-153 546.6 312 82.7
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 1.5e-153 546.6 371 73.0
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.5e-153 546.6 369 74.0
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 7.4e-153 544.3 369 72.4
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 9.6e-153 543.9 370 73.0
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 1.3e-152 543.5 370 71.9
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 2.8e-152 542.3 371 72.2
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.8e-152 542.3 342 77.2
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 3.7e-152 542.0 341 78.0
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 1.1e-151 540.4 371 72.0
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.1e-151 540.4 376 72.9
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.4e-151 540.0 312 81.1
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 1.4e-151 540.0 370 70.0
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 1.8e-151 539.7 374 71.7
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 3.1e-151 538.9 370 71.4
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 4.0e-151 538.5 370 71.6
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 4.0e-151 538.5 374 72.7
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 9.0e-151 537.3 357 73.9
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 2.6e-150 535.8 349 75.6
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 4.5e-150 535.0 381 69.3
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 7.6e-150 534.3 343 75.5
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 1.0e-149 533.9 360 73.6
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 2.2e-149 532.7 341 75.7
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 2.2e-149 532.7 359 73.8
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.2e-149 532.7 394 68.8
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 3.8e-149 531.9 326 78.5
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-148 530.4 358 73.2
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-148 530.4 359 73.5
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 1.1e-148 530.4 359 73.5
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 2.5e-148 529.3 361 73.4
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 3.2e-148 528.9 357 72.8
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.2e-148 528.9 482 57.7
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 7.1e-148 527.7 337 74.5
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 2.1e-147 526.2 371 68.7
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 1.3e-146 523.5 397 68.0
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 1.9e-145 519.6 380 70.8
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 3.7e-144 515.4 317 77.6
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 1.4e-143 513.5 312 77.6
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 2.0e-142 509.6 347 72.6
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 8.4e-141 504.2 339 76.1
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 1.1e-140 503.8 314 73.9
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 7.1e-140 501.1 394 68.0
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 3.5e-139 498.8 319 76.8
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.0e-130 470.7 276 81.2
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 5.1e-130 468.4 339 69.0
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 2.8e-128 462.6 277 79.4
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 6.3e-128 461.5 329 71.4
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 1.3e-120 437.2 286 69.9
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.4e-119 433.7 282 70.2
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 2.6e-118 429.5 357 63.9
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 1.7e-117 426.8 286 71.7
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 1.9e-116 423.3 287 71.8
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 2.3e-114 416.4 329 67.2
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.5e-110 402.5 244 77.0
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 1.9e-108 396.7 285 66.3
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 8.8e-106 387.9 261 76.2
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 2.2e-104 383.3 287 63.4
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 2.9e-101 372.9 246 70.7
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 7.2e-100 368.2 290 61.7
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 1.2e-97 360.9 259 70.7
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 2.8e-96 356.3 294 58.2
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 5.0e-93 345.5 329 59.9
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 5.4e-87 325.5 288 57.6
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 2.4e-79 300.1 160 88.1
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 2.3e-77 293.5 168 82.7
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 2.1e-67 260.4 229 57.2
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 1.9e-60 237.3 127 85.8
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 4.3e-60 236.1 130 83.1
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 4.2e-55 219.5 332 42.8
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 6.0e-54 215.7 146 73.3
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 1.4e-47 194.5 146 67.8
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 5.1e-45 186.0 146 66.4
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 6.6e-45 185.7 100 84.0
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-39 168.3 146 60.3
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.9e-39 167.5 95 74.7
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.1e-35 154.1 110 62.7
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 2.3e-29 134.0 72 86.1
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 2.3e-21 107.5 72 72.2
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 3.9e-21 106.7 57 82.5
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 5.7e-20 102.8 67 73.1
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 5.7e-20 102.8 67 73.1
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.6e-19 101.3 64 76.6
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 1.9e-15 87.8 44 86.4
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 4.2e-15 86.7 44 86.4
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 9.4e-15 85.5 43 88.4
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 5.1e-13 79.7 41 82.9
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 2.0e-12 77.8 35 94.3
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 3.1e-10 70.5 40 85.0
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 2.0e-09 67.8 102 49.0
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 3.8e-08 63.5 77 49.4
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 2.1e-06 57.8 116 28.4


User provided reference genes

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