Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 5.7e-65 250.8 125 100.0
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 1.0e-45 186.8 118 75.4
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 1.7e-45 186.0 123 69.9
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 1.1e-44 183.3 116 75.0
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 1.5e-44 183.0 123 71.5
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 3.2e-44 181.8 123 68.3
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 4.2e-44 181.4 124 68.5
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 4.2e-44 181.4 123 68.3
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 5.5e-44 181.0 123 69.9
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 7.2e-44 180.6 123 68.3
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 1.2e-43 179.9 124 67.7
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 2.7e-43 178.7 123 67.5
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 2.7e-43 178.7 116 72.4
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 2.7e-43 178.7 119 69.7
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 2.7e-43 178.7 123 68.3
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 2.7e-43 178.7 125 68.0
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 3.6e-43 178.3 124 64.5
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 4.7e-43 177.9 118 68.6
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 4.7e-43 177.9 123 66.7
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 6.1e-43 177.6 119 68.1
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 6.1e-43 177.6 125 67.2
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 8.0e-43 177.2 123 68.3
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 8.0e-43 177.2 119 68.1
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 8.0e-43 177.2 123 68.3
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 8.0e-43 177.2 123 68.3
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 1.0e-42 176.8 120 66.7
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 1.8e-42 176.0 125 66.4
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 1.8e-42 176.0 124 66.1
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 1.8e-42 176.0 125 67.2
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 1.8e-42 176.0 120 67.5
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.8e-42 176.0 123 66.7
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.8e-42 176.0 125 67.2
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 1.8e-42 176.0 125 67.2
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.8e-42 176.0 123 66.7
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 1.8e-42 176.0 123 67.5
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 2.3e-42 175.6 122 66.4
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.3e-42 175.6 124 64.5
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 2.3e-42 175.6 119 68.1
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.3e-42 175.6 120 68.3
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 2.3e-42 175.6 116 71.6
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 3.0e-42 175.3 119 67.2
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 3.0e-42 175.3 119 67.2
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 3.0e-42 175.3 119 67.2
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 3.0e-42 175.3 120 68.3
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 4.0e-42 174.9 119 67.2
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 4.0e-42 174.9 119 67.2
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 4.0e-42 174.9 118 66.9
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 4.0e-42 174.9 123 65.0
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.0e-42 174.9 123 65.9
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 4.0e-42 174.9 116 70.7
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 5.2e-42 174.5 119 69.7
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 6.8e-42 174.1 119 66.4
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 6.8e-42 174.1 119 69.7
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 8.8e-42 173.7 119 68.1
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 1.2e-41 173.3 124 68.5
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.2e-41 173.3 123 66.7
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.5e-41 172.9 125 66.4
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 2.0e-41 172.6 123 67.5
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.0e-41 172.6 123 65.9
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 2.6e-41 172.2 122 66.4
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 4.4e-41 171.4 123 65.0
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 5.7e-41 171.0 118 67.8
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 5.7e-41 171.0 115 69.6
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 5.7e-41 171.0 125 64.0
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 7.5e-41 170.6 116 67.2
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 7.5e-41 170.6 124 65.3
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 7.5e-41 170.6 123 65.0
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 9.8e-41 170.2 116 66.4
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 9.8e-41 170.2 124 64.5
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 9.8e-41 170.2 124 65.3
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 9.8e-41 170.2 123 64.2
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 9.8e-41 170.2 119 65.5
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 9.8e-41 170.2 123 64.2
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 9.8e-41 170.2 117 70.9
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.3e-40 169.9 124 62.1
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.7e-40 169.5 116 66.4
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 1.7e-40 169.5 123 65.9
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 2.2e-40 169.1 114 68.4
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.2e-40 169.1 120 66.7
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 3.7e-40 168.3 119 64.7
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 4.8e-40 167.9 125 64.8
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 8.3e-40 167.2 116 66.4
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 1.1e-39 166.8 122 62.3
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.1e-39 166.8 124 62.9
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 1.1e-39 166.8 123 65.9
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 1.1e-39 166.8 121 65.3
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 1.1e-39 166.8 119 65.5
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 1.8e-39 166.0 118 65.3
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 1.8e-39 166.0 124 62.9
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 2.4e-39 165.6 110 70.9
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 3.1e-39 165.2 116 63.8
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 3.1e-39 165.2 116 63.8
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 5.4e-39 164.5 105 74.3
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 7.0e-39 164.1 116 63.8
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 7.0e-39 164.1 108 72.2
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 7.0e-39 164.1 123 63.4
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 9.1e-39 163.7 121 68.6
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 1.2e-38 163.3 124 62.1
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.2e-38 163.3 123 67.5
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 1.2e-38 163.3 123 61.0
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.3e-37 159.8 125 61.6
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 1.9e-36 156.0 116 61.2
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 3.3e-36 155.2 112 62.5
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 4.2e-36 154.8 116 64.7
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 5.5e-36 154.5 121 58.7
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 4.7e-35 151.4 103 67.0
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 6.1e-35 151.0 115 63.5
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 8.0e-35 150.6 98 75.5
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 1.4e-34 149.8 121 60.3
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.8e-34 149.4 110 64.5
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 4.0e-34 148.3 121 60.3
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 8.9e-34 147.1 95 76.8
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 7.5e-33 144.1 98 69.4
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 1.7e-32 142.9 121 57.9
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.2e-32 142.5 90 72.2
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.8e-32 142.1 99 67.7
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 4.9e-32 141.4 98 66.3
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 2.4e-31 139.0 120 55.0
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.6e-30 136.3 99 60.6
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 2.7e-30 135.6 98 66.3
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 2.7e-30 135.6 98 66.3
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 2.7e-30 135.6 125 56.0
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 5.9e-30 134.4 119 55.5
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 3.8e-29 131.7 117 59.0
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 5.0e-29 131.3 104 58.7
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 1.1e-28 130.2 116 55.2
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 1.9e-28 129.4 120 56.7
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 4.3e-28 128.3 114 56.1
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.6e-27 126.3 86 68.6
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 2.8e-27 125.6 113 52.2
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 6.1e-27 124.4 107 57.0
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.0e-26 123.6 113 53.1
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 1.4e-26 123.2 124 52.4
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 1.8e-26 122.9 113 51.3
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 4.0e-26 121.7 107 52.3
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 4.0e-26 121.7 114 57.9
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 2.6e-25 119.0 116 47.4
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 7.5e-25 117.5 95 60.0
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 7.5e-25 117.5 118 52.5
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 9.8e-25 117.1 93 58.1
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 2.9e-24 115.5 116 51.7
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 6.4e-24 114.4 118 49.2
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.1e-23 113.6 102 54.9
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 1.4e-23 113.2 85 63.5
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.4e-23 113.2 88 58.0
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 4.1e-23 111.7 83 55.4
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 5.4e-23 111.3 83 59.0
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 7.0e-23 110.9 130 48.5
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 4.6e-22 108.2 93 51.6
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 1.3e-21 106.7 124 42.7
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 5.0e-21 104.8 89 58.4
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.3e-18 95.9 74 67.6
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 2.6e-17 92.4 61 70.5
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 1.5e-12 76.6 59 54.2
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 1.4e-10 70.1 73 52.1
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 1.1e-07 60.5 61 44.3


User provided reference genes

Program Settings