Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 8.0e-310 1066.2 532 100.0
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 7.0e-205 717.6 493 77.9
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 1.8e-184 649.8 474 72.8
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 1.1e-173 614.0 492 67.3
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 1.1e-170 604.0 492 65.9
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 2.1e-169 599.7 494 65.4
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 4.4e-167 592.0 491 65.0
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 1.4e-165 587.0 474 66.2
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 4.1e-165 585.5 500 64.2
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.1e-165 585.5 492 64.0
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.2e-164 583.9 479 64.9
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 6.0e-164 581.6 493 63.5
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 3.9e-163 578.9 479 64.5
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 6.6e-163 578.2 484 64.5
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 6.6e-163 578.2 479 63.7
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 8.6e-163 577.8 519 61.7
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 1.1e-162 577.4 492 63.2
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 1.1e-162 577.4 476 63.9
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 1.5e-162 577.0 479 64.3
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 4.3e-162 575.5 474 65.6
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 7.3e-162 574.7 474 64.6
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 7.3e-162 574.7 473 64.3
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 3.6e-161 572.4 479 64.5
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 6.2e-161 571.6 474 64.6
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 8.1e-161 571.2 474 65.6
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 3.4e-159 565.8 475 62.9
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 7.6e-159 564.7 488 61.5
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.2e-158 563.1 488 61.3
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 2.9e-158 562.8 483 61.9
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 3.8e-158 562.4 492 61.6
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 1.4e-157 560.5 484 62.0
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 1.9e-157 560.1 483 62.9
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 3.2e-157 559.3 484 61.6
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 9.3e-157 557.8 480 62.1
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 1.6e-156 557.0 484 62.2
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 2.7e-156 556.2 483 60.9
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 3.5e-156 555.8 496 61.3
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.5e-156 555.8 501 59.3
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 1.3e-155 553.9 483 62.1
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 3.0e-155 552.7 506 59.7
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 3.9e-155 552.4 483 61.5
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.1e-154 550.8 488 60.7
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 1.1e-154 550.8 484 62.0
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 1.9e-154 550.1 501 59.1
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 3.3e-154 549.3 492 60.2
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 5.6e-154 548.5 483 60.2
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 7.3e-154 548.1 516 58.7
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 1.6e-153 547.0 492 59.8
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 6.2e-153 545.0 492 60.8
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 6.2e-153 545.0 493 61.3
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 3.1e-152 542.7 479 60.1
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 4.0e-152 542.3 470 60.6
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 5.3e-152 542.0 492 58.9
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 6.9e-152 541.6 474 61.4
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 2.6e-151 539.7 479 60.5
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 4.4e-151 538.9 492 58.7
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 7.6e-151 538.1 479 61.8
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.3e-150 537.3 500 60.8
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 2.2e-150 536.6 492 60.4
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 2.9e-150 536.2 496 58.1
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 6.4e-150 535.0 501 58.1
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.1e-149 534.3 500 60.6
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.4e-149 533.9 492 58.7
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 4.2e-149 532.3 444 64.4
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 7.1e-149 531.6 483 58.4
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.6e-148 530.4 492 58.1
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.6e-148 530.4 492 60.4
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 2.1e-148 530.0 492 58.5
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 2.7e-148 529.6 492 58.9
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 6.0e-148 528.5 492 58.7
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.3e-147 527.3 492 59.3
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.7e-147 526.9 470 60.6
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.3e-147 526.6 479 59.7
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 2.3e-147 526.6 493 57.6
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 3.0e-147 526.2 492 58.3
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 3.9e-147 525.8 487 58.5
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 6.6e-147 525.0 493 59.0
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 6.6e-147 525.0 493 59.0
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 8.7e-147 524.6 474 60.5
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.5e-146 523.1 479 60.3
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 4.3e-146 522.3 492 58.7
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 4.3e-146 522.3 493 58.8
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 4.3e-146 522.3 493 58.4
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 4.3e-146 522.3 492 58.7
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 7.3e-146 521.5 493 58.4
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 7.3e-146 521.5 492 58.5
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 7.3e-146 521.5 493 58.4
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 9.6e-146 521.2 492 57.9
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 2.8e-145 519.6 539 54.7
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 2.8e-145 519.6 492 58.5
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 2.8e-145 519.6 492 57.7
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 2.8e-145 519.6 480 58.5
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 3.6e-145 519.2 480 58.8
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 4.8e-145 518.8 495 58.0
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 6.2e-145 518.5 492 58.1
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 6.2e-145 518.5 492 58.1
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.2e-145 518.5 477 59.1
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 8.1e-145 518.1 475 56.0
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 8.1e-145 518.1 474 59.3
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 1.1e-144 517.7 492 58.1
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.4e-144 517.3 477 59.1
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.8e-144 516.9 473 59.8
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 2.4e-144 516.5 492 57.5
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 2.4e-144 516.5 488 58.4
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 4.0e-144 515.8 500 58.0
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 6.9e-144 515.0 483 58.4
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 6.9e-144 515.0 479 57.0
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 2.0e-143 513.5 492 58.3
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 2.6e-143 513.1 501 56.5
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.4e-141 507.3 479 58.0
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 2.7e-140 503.1 480 57.3
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.3e-139 500.7 500 58.0
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.8e-139 500.4 500 58.0
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 8.7e-139 498.0 501 55.7
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 7.6e-135 485.0 444 59.5
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.3e-134 484.2 526 55.7
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 2.9e-134 483.0 479 54.5
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 2.5e-130 469.9 526 50.8
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 3.3e-130 469.5 493 53.8
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 2.0e-127 460.3 486 54.1
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 4.5e-127 459.1 429 59.9
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 7.6e-127 458.4 493 53.3
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 2.9e-126 456.4 474 52.7
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 8.4e-126 454.9 488 52.9
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.4e-115 421.0 475 51.2
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 6.7e-115 418.7 540 47.6
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 1.0e-110 404.8 417 55.4
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 2.7e-108 396.7 431 52.4
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 3.6e-108 396.4 353 59.8
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 2.8e-105 386.7 477 45.5
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 6.7e-99 365.5 471 44.2
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 4.5e-95 352.8 425 46.8
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 6.8e-75 285.8 426 41.8
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 7.0e-72 275.8 258 57.8
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 2.8e-68 263.8 234 61.5
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 1.4e-64 251.5 212 59.9
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.6e-63 248.1 203 64.5
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.3e-57 228.4 212 59.0
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 2.1e-47 194.5 475 33.9
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 2.1e-44 184.5 168 56.5
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 7.1e-40 169.5 168 53.0
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.7e-38 164.9 218 44.0
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.1e-35 154.1 150 56.7
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 9.0e-35 152.5 380 29.7
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.1e-32 145.6 320 31.6
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 3.6e-28 130.6 67 89.6
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.2e-26 125.6 100 61.0
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.1e-20 104.8 141 41.8
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.1e-20 104.8 141 41.8
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 6.9e-19 99.8 52 90.4
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 8.4e-17 92.8 120 41.7
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 5.1e-14 83.6 73 60.3
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 3.8e-09 67.4 100 40.0
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.5e-08 64.7 36 83.3
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 2.1e-07 61.6 36 75.0
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 2.3e-06 58.2 85 30.6


User provided reference genes

Program Settings