Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 3.3e-43 177.9 89 100.0
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.7e-39 165.6 89 94.4
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 1.6e-37 159.1 87 93.1
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 1.6e-37 159.1 87 93.1
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 1.6e-32 142.5 72 98.6
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 1.6e-32 142.5 72 98.6
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 5.9e-32 140.6 72 97.2
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.7e-31 139.0 73 94.5
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 4.0e-28 127.9 71 87.3
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 4.0e-28 127.9 71 87.3
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 2.6e-27 125.2 73 86.3
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 1.3e-26 122.9 69 88.4
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 2.2e-26 122.1 67 86.6
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.8e-26 121.7 65 87.7
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.8e-26 121.7 72 80.6
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 4.8e-26 120.9 73 78.1
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 8.3e-26 120.2 65 84.6
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 1.1e-25 119.8 74 82.4
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 1.1e-25 119.8 65 87.7
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 1.1e-25 119.8 72 80.6
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 1.4e-25 119.4 76 77.6
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.4e-25 119.4 67 85.1
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.4e-25 119.4 67 85.1
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.4e-25 119.4 67 85.1
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.4e-25 119.4 75 74.7
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 1.4e-25 119.4 64 87.5
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.8e-25 119.0 67 83.6
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.8e-25 119.0 67 85.1
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 1.8e-25 119.0 64 87.5
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 1.8e-25 119.0 64 87.5
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 1.8e-25 119.0 75 78.7
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 2.4e-25 118.6 63 88.9
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.4e-25 118.6 67 83.6
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 2.4e-25 118.6 67 85.1
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 2.4e-25 118.6 73 75.3
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 3.1e-25 118.2 63 87.3
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 3.1e-25 118.2 63 87.3
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 4.1e-25 117.9 64 84.4
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.1e-25 117.9 67 83.6
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 4.1e-25 117.9 67 83.6
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 4.1e-25 117.9 66 83.3
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 4.1e-25 117.9 64 87.5
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 4.1e-25 117.9 63 87.3
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 5.3e-25 117.5 64 87.5
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 5.3e-25 117.5 66 84.8
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 5.3e-25 117.5 64 87.5
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 5.3e-25 117.5 64 82.8
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 5.3e-25 117.5 67 83.6
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 5.3e-25 117.5 62 88.7
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 5.3e-25 117.5 63 87.3
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 5.3e-25 117.5 63 85.7
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 5.3e-25 117.5 63 85.7
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 7.0e-25 117.1 64 85.9
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 7.0e-25 117.1 64 87.5
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 7.0e-25 117.1 64 85.9
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 9.1e-25 116.7 64 85.9
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 9.1e-25 116.7 64 84.4
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 1.2e-24 116.3 65 81.5
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 1.6e-24 115.9 65 81.5
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 1.6e-24 115.9 69 76.8
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 2.0e-24 115.5 63 82.5
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 2.0e-24 115.5 69 79.7
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.0e-24 115.5 64 85.9
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.0e-24 115.5 64 85.9
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 2.0e-24 115.5 64 84.4
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 2.0e-24 115.5 63 84.1
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 2.0e-24 115.5 63 84.1
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 2.7e-24 115.2 66 81.8
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 3.5e-24 114.8 66 81.8
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 4.5e-24 114.4 66 80.3
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 4.5e-24 114.4 63 85.7
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 4.5e-24 114.4 63 85.7
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 4.5e-24 114.4 67 80.6
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 5.9e-24 114.0 66 80.3
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 5.9e-24 114.0 64 79.7
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 5.9e-24 114.0 63 85.7
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 7.7e-24 113.6 66 80.3
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 7.7e-24 113.6 63 82.5
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 7.7e-24 113.6 63 82.5
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 1.0e-23 113.2 67 79.1
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 1.0e-23 113.2 64 84.4
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 1.3e-23 112.8 67 79.1
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 1.3e-23 112.8 67 77.6
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 1.3e-23 112.8 66 78.8
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 1.3e-23 112.8 75 76.0
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 1.3e-23 112.8 69 76.8
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 1.7e-23 112.5 74 75.7
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 2.9e-23 111.7 66 75.8
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 3.8e-23 111.3 64 78.1
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 3.8e-23 111.3 63 82.5
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 6.5e-23 110.5 66 77.3
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 6.5e-23 110.5 66 75.8
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 8.5e-23 110.2 64 79.7
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 1.1e-22 109.8 66 74.2
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 1.1e-22 109.8 61 82.0
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 1.1e-22 109.8 66 75.8
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 1.1e-22 109.8 67 76.1
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 1.9e-22 109.0 66 74.2
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 1.9e-22 109.0 63 79.4
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 2.5e-22 108.6 66 74.2
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 2.5e-22 108.6 66 74.2
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 2.5e-22 108.6 66 74.2
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 3.2e-22 108.2 67 74.6
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 4.2e-22 107.8 66 77.3
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 4.2e-22 107.8 67 74.6
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 5.5e-22 107.5 64 76.6
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 7.2e-22 107.1 67 73.1
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 9.4e-22 106.7 66 75.8
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 1.2e-21 106.3 66 75.8
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 1.6e-21 105.9 66 75.8
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 2.1e-21 105.5 66 74.2
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 2.1e-21 105.5 66 74.2
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 2.1e-21 105.5 66 74.2
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 2.1e-21 105.5 66 74.2
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.1e-21 105.5 60 83.3
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 1.0e-20 103.2 80 67.5
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 2.6e-19 98.6 98 54.1
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 2.0e-16 89.0 49 83.7
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.9e-16 87.4 47 80.9
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 1.1e-14 83.2 63 60.3
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 4.2e-14 81.3 85 51.8
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 2.1e-13 79.0 36 88.9
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 4.7e-13 77.8 37 83.8
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 2.3e-12 75.5 62 54.8
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 9.8e-11 70.1 39 89.7
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 8.3e-10 67.0 35 74.3
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 8.3e-10 67.0 35 74.3
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.1e-09 66.6 36 75.0
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 1.4e-09 66.2 36 75.0
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 2.4e-09 65.5 47 63.8
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 2.4e-09 65.5 47 63.8
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 7.0e-09 63.9 60 53.3
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 1.6e-08 62.8 39 61.5
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 2.7e-08 62.0 55 54.5
SalBow5G0226 Salvia bowleyana HOM05D005881 ORTHO05D007298 1.0e-07 60.1 59 47.5


User provided reference genes

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