Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 2.9e-77 292.0 165 100.0
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 1.4e-74 283.1 165 95.2
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 5.6e-52 208.0 144 75.0
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 1.1e-47 193.7 172 74.4
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 1.9e-47 193.0 167 74.9
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 2.4e-47 192.6 170 74.1
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.2e-43 180.3 175 69.1
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 1.2e-43 180.3 169 72.2
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 1.6e-43 179.9 167 74.9
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 8.1e-43 177.6 167 63.5
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 8.1e-43 177.6 162 71.0
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 6.8e-42 174.5 167 71.9
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 8.9e-42 174.1 165 69.7
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 1.3e-40 170.2 161 67.7
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 2.2e-40 169.5 164 71.3
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 2.2e-40 169.5 146 69.9
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 2.9e-40 169.1 160 67.5
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 8.4e-40 167.5 140 67.9
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.1e-39 167.2 151 66.2
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 2.4e-39 166.0 174 64.4
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 3.2e-39 165.6 118 88.1
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 9.2e-39 164.1 103 77.7
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 2.1e-38 162.9 146 67.1
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 4.6e-38 161.8 109 90.8
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 4.6e-38 161.8 143 66.4
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 4.6e-38 161.8 153 71.2
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 7.8e-38 161.0 168 65.5
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 1.3e-37 160.2 147 61.9
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 1.7e-37 159.8 169 65.7
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 3.9e-37 158.7 125 80.8
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 3.9e-37 158.7 172 63.4
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 5.1e-37 158.3 125 80.0
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 6.6e-37 157.9 141 75.9
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 8.6e-37 157.5 169 60.9
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 8.6e-37 157.5 125 80.0
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 8.6e-37 157.5 167 61.7
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.1e-36 157.1 103 77.7
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 1.1e-36 157.1 122 81.1
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 2.5e-36 156.0 122 77.9
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 4.3e-36 155.2 104 91.3
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 5.6e-36 154.8 156 62.2
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 5.6e-36 154.8 125 79.2
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 3.6e-35 152.1 136 58.8
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 6.2e-35 151.4 165 63.0
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 6.2e-35 151.4 140 62.9
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 8.1e-35 151.0 145 68.3
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 8.1e-35 151.0 144 60.4
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 1.1e-34 150.6 176 60.8
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 1.1e-34 150.6 176 56.8
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.1e-34 150.6 86 86.0
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 2.4e-34 149.4 121 76.9
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 2.4e-34 149.4 84 84.5
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 1.5e-33 146.7 141 61.7
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 2.6e-33 146.0 125 72.8
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 3.4e-33 145.6 160 65.0
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 5.8e-33 144.8 144 56.9
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 9.9e-33 144.1 140 61.4
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 1.3e-32 143.7 104 85.6
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 1.7e-32 143.3 144 65.3
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 2.2e-32 142.9 116 75.9
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 2.2e-32 142.9 83 84.3
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 2.2e-32 142.9 83 84.3
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 2.2e-32 142.9 116 75.9
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 2.9e-32 142.5 116 75.0
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.9e-32 142.5 139 59.7
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 3.8e-32 142.1 94 74.5
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 8.4e-32 141.0 118 77.1
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 1.1e-31 140.6 146 58.2
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.9e-31 139.8 83 79.5
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 3.2e-31 139.0 125 61.6
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 4.2e-31 138.7 102 66.7
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 5.4e-31 138.3 95 72.6
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 5.4e-31 138.3 102 66.7
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 5.4e-31 138.3 119 66.4
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 7.1e-31 137.9 144 54.9
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 9.3e-31 137.5 96 88.5
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 1.2e-30 137.1 114 72.8
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 2.1e-30 136.3 116 67.2
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 2.7e-30 136.0 114 68.4
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 3.5e-30 135.6 110 67.3
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 4.6e-30 135.2 110 70.0
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 4.6e-30 135.2 78 82.1
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 6.0e-30 134.8 114 71.9
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 7.8e-30 134.4 113 74.3
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.0e-29 134.0 86 77.9
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 1.3e-29 133.7 147 55.8
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 2.3e-29 132.9 126 59.5
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 6.6e-29 131.3 116 61.2
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 6.6e-29 131.3 116 65.5
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 6.6e-29 131.3 124 58.9
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 1.1e-28 130.6 113 71.7
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 1.1e-28 130.6 113 71.7
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 1.1e-28 130.6 113 71.7
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 1.1e-28 130.6 113 71.7
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.1e-28 130.6 123 59.3
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 3.3e-28 129.0 89 68.5
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 5.6e-28 128.3 112 65.2
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 1.3e-27 127.1 115 74.8
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 3.6e-27 125.6 94 67.0
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 8.1e-27 124.4 94 69.1
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 8.1e-27 124.4 79 73.4
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 1.1e-26 124.0 69 81.2
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 1.8e-26 123.2 112 68.8
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 2.4e-26 122.9 122 54.9
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 3.1e-26 122.5 121 53.7
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 7.6e-25 117.9 168 57.1
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 2.9e-24 115.9 82 68.3
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 3.8e-24 115.5 76 71.1
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 8.4e-24 114.4 116 60.3
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 8.4e-24 114.4 137 52.6
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 8.4e-24 114.4 114 66.7
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 1.1e-23 114.0 115 64.3
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 2.4e-23 112.8 112 66.1
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 2.4e-23 112.8 128 56.2
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 5.4e-23 111.7 85 65.9
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 7.1e-23 111.3 135 48.9
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 1.0e-21 107.5 113 54.0
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 6.7e-21 104.8 109 60.6
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 8.7e-21 104.4 76 67.1
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 1.1e-20 104.0 132 51.5
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 5.6e-20 101.7 60 78.3
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 1.6e-19 100.1 112 54.5
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 5.8e-17 91.7 119 50.4
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 9.9e-17 90.9 68 63.2
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 9.9e-17 90.9 68 63.2
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 4.9e-16 88.6 56 73.2
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 4.9e-16 88.6 116 52.6
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 6.4e-16 88.2 84 71.4
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 6.4e-16 88.2 84 71.4
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.4e-15 87.0 84 61.9
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 1.2e-14 84.0 83 55.4
Sabra19G0050600 Salix brachista HOM05D005516 ORTHO05D006713 3.0e-13 79.3 110 53.6
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 8.1e-11 71.2 94 45.7
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 1.7e-08 63.5 64 62.5
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 9.3e-07 57.8 36 69.4


User provided reference genes

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