Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20346 Corylus avellana HOM05D003843 ORTHO05D004646 3.1e-87 325.1 163 100.0
Haze_20342 Corylus avellana HOM05D003843 ORTHO05D004646 2.1e-80 302.4 150 100.0
QL07p015316 Quercus lobata HOM05D003843 ORTHO05D004646 4.0e-79 298.1 150 98.7
CiPaw.09G163100 Carya illinoinensis HOM05D003843 ORTHO05D004646 9.0e-79 297.0 150 98.7
QL07p015334 Quercus lobata HOM05D003843 ORTHO05D004646 3.8e-77 291.6 150 96.0
THA.LOC104800481 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 1.4e-76 289.7 150 95.3
Manes.01G175000 Manihot esculenta HOM05D003843 ORTHO05D004646 2.5e-76 288.9 150 95.3
GSVIVG01025835001 Vitis vinifera HOM05D003843 ORTHO05D004646 2.5e-76 288.9 150 95.3
Gohir.A09G107400 Gossypium hirsutum HOM05D003843 ORTHO05D004646 3.2e-76 288.5 150 94.7
Gohir.D09G104200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 3.2e-76 288.5 150 94.7
Gorai.006G121500 Gossypium raimondii HOM05D003843 ORTHO05D004646 3.2e-76 288.5 150 94.7
Potri.009G020900 Populus trichocarpa HOM05D003843 ORTHO05D004646 3.2e-76 288.5 150 94.7
Sabra09G0011400 Salix brachista HOM05D003843 ORTHO05D004646 4.2e-76 288.1 150 94.7
Atru.chr3.2831 Acer truncatum HOM05D003843 ORTHO05D004646 5.5e-76 287.7 150 94.7
CDE07G0877 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 5.5e-76 287.7 150 93.3
Ca_03426_v3 Cicer arietinum L. HOM05D003843 ORTHO05D004646 5.5e-76 287.7 150 94.7
Lj2C938G6 Lonicera japonica HOM05D003843 ORTHO05D004646 5.5e-76 287.7 150 94.7
Nitab4.5_0000718g0260 Nicotiana tabacum HOM05D003843 ORTHO05D004646 9.3e-76 287.0 150 94.7
PGR102G1130 Punica granatum HOM05D003843 ORTHO05D004646 9.3e-76 287.0 150 94.0
arahy.Tifrunner.gnm1.ann1.286ZLS Arachis hypogaea HOM05D003843 ORTHO05D004646 1.2e-75 286.6 150 94.0
arahy.Tifrunner.gnm1.ann1.66YQP5 Arachis hypogaea HOM05D003843 ORTHO05D004646 1.2e-75 286.6 150 94.0
Cpa.g.sc84.81 Carica papaya HOM05D003843 ORTHO05D004646 1.2e-75 286.6 150 94.0
Glyma.03G004400 Glycine max HOM05D003843 ORTHO05D004646 1.2e-75 286.6 150 94.0
Phvul.001G102200 Phaseolus vulgaris HOM05D003843 ORTHO05D004646 1.2e-75 286.6 150 94.0
PGSC0003DMG400022712 Solanum tuberosum HOM05D003843 ORTHO05D004646 1.2e-75 286.6 150 94.0
Thecc.09G256000 Theobroma cacao HOM05D003843 ORTHO05D004646 1.2e-75 286.6 150 94.0
VMungo1383G3260 Vigna mungo HOM05D003843 ORTHO05D004646 1.2e-75 286.6 150 94.0
THA.LOC104826467 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 1.6e-75 286.2 150 94.0
Peaxi162Scf00032g02619 Petunia axillaris HOM05D003843 ORTHO05D004646 2.1e-75 285.8 150 94.0
Ciclev10015276m.g Citrus clementina HOM05D003843 ORTHO05D004646 2.7e-75 285.4 150 94.0
Lj1g0018589 Lotus japonicus HOM05D003843 ORTHO05D004646 2.7e-75 285.4 150 93.3
PSO339G6626 Papaver somniferum HOM05D003843 ORTHO05D004646 2.7e-75 285.4 150 93.3
PSO384G3915 Papaver somniferum HOM05D003843 ORTHO05D004646 2.7e-75 285.4 150 93.3
Psat3g083920 Pisum sativum HOM05D003843 ORTHO05D004646 2.7e-75 285.4 150 93.3
Rhsim13G0201300 Rhododendron simsii HOM05D003843 ORTHO05D004646 2.7e-75 285.4 150 94.0
TPR.G23658 Trifolium pratense HOM05D003843 ORTHO05D004646 2.7e-75 285.4 150 93.3
TWI75G1397 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 2.7e-75 285.4 150 94.0
arahy.Tifrunner.gnm1.ann1.802V4W Arachis hypogaea HOM05D003843 ORTHO05D004646 3.5e-75 285.0 150 93.3
arahy.Tifrunner.gnm1.ann1.CI8U65 Arachis hypogaea HOM05D003843 ORTHO05D004646 3.5e-75 285.0 150 93.3
MD11G1176300 Malus domestica HOM05D003843 ORTHO05D004646 3.5e-75 285.0 150 94.0
Sabra16G0132300 Salix brachista HOM05D003843 ORTHO05D004646 3.5e-75 285.0 150 94.0
TAR623G0430 Trochodendron aralioides HOM05D003843 ORTHO05D004646 3.5e-75 285.0 150 94.0
Nitab4.5_0005212g0010 Nicotiana tabacum HOM05D003843 ORTHO05D004646 4.6e-75 284.6 153 91.5
AUR62033585 Chenopodium quinoa HOM05D003843 ORTHO05D004646 6.1e-75 284.3 150 93.3
AUR62041414 Chenopodium quinoa HOM05D003843 ORTHO05D004646 6.1e-75 284.3 150 93.3
Cc00_g24230 Coffea canephora HOM05D003843 ORTHO05D004646 6.1e-75 284.3 150 92.7
Medtr7g087530 Medicago truncatula HOM05D003843 ORTHO05D004646 6.1e-75 284.3 150 92.7
Nitab4.5_0000492g0220 Nicotiana tabacum HOM05D003843 ORTHO05D004646 6.1e-75 284.3 150 93.3
Nitab4.5_0008505g0020 Nicotiana tabacum HOM05D003843 ORTHO05D004646 6.1e-75 284.3 150 93.3
Os01g0279200 Oryza sativa ssp. japonica HOM05D003843 ORTHO05D004646 6.1e-75 284.3 150 93.3
Solyc01g008840.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 6.1e-75 284.3 150 93.3
Sopen01g004350 Solanum pennellii HOM05D003843 ORTHO05D004646 6.1e-75 284.3 150 93.3
Zm00001eb332660 Zea mays HOM05D003843 ORTHO05D004646 6.1e-75 284.3 150 93.3
Gohir.A07G118200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 7.9e-75 283.9 150 93.3
Gohir.D07G122600 Gossypium hirsutum HOM05D003843 ORTHO05D004646 7.9e-75 283.9 150 93.3
Gorai.001G132400 Gossypium raimondii HOM05D003843 ORTHO05D004646 7.9e-75 283.9 150 93.3
MD00G1108200 Malus domestica HOM05D003843 ORTHO05D004646 7.9e-75 283.9 150 93.3
Prupe.6G156800 Prunus persica HOM05D003843 ORTHO05D004646 7.9e-75 283.9 150 93.3
Sopen11g024630 Solanum pennellii HOM05D003843 ORTHO05D004646 7.9e-75 283.9 150 93.3
TWI79G0192 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 7.9e-75 283.9 150 92.7
Manes.02G133500 Manihot esculenta HOM05D003843 ORTHO05D004646 1.0e-74 283.5 150 92.7
Solyc11g062430.2 Solanum lycopersicum HOM05D003843 ORTHO05D004646 1.0e-74 283.5 150 93.3
EL10Ac7g16998 Beta vulgaris HOM05D003843 ORTHO05D004646 1.3e-74 283.1 150 92.7
Eucgr.B03772 Eucalyptus grandis HOM05D003843 ORTHO05D004646 1.3e-74 283.1 150 92.0
Glyma.05G079400 Glycine max HOM05D003843 ORTHO05D004646 1.3e-74 283.1 150 91.3
RcHm_v2.0_Chr5g0050051 Rosa chinensis HOM05D003843 ORTHO05D004646 1.3e-74 283.1 150 92.7
CSS0016417 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 1.8e-74 282.7 150 93.3
CSS0043612 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 1.8e-74 282.7 150 93.3
Glyma.19G121500 Glycine max HOM05D003843 ORTHO05D004646 1.8e-74 282.7 150 92.7
MD03G1163800 Malus domestica HOM05D003843 ORTHO05D004646 1.8e-74 282.7 150 93.3
Potri.001G222700 Populus trichocarpa HOM05D003843 ORTHO05D004646 1.8e-74 282.7 150 92.7
Migut.N02389 Erythranthe guttata HOM05D003843 ORTHO05D004646 2.3e-74 282.3 150 92.0
HanXRQChr04g0125421 Helianthus annuus HOM05D003843 ORTHO05D004646 2.3e-74 282.3 150 92.7
ATR1096G029 Amborella trichopoda HOM05D003843 ORTHO05D004646 3.0e-74 282.0 150 92.0
Hma1.2p1_2801F.1_g328800 Hydrangea macrophylla HOM05D003843 ORTHO05D004646 3.0e-74 282.0 150 93.3
Lalb_Chr14g0365261 Lupinus albus HOM05D003843 ORTHO05D004646 3.0e-74 282.0 150 92.0
Zm00001eb128990 Zea mays HOM05D003843 ORTHO05D004646 3.0e-74 282.0 150 92.7
CAN.G96.3 Capsicum annuum HOM05D003843 ORTHO05D004646 3.9e-74 281.6 150 92.7
Nn7g37169 Nelumbo nucifera HOM05D003843 ORTHO05D004646 3.9e-74 281.6 150 92.7
Glyma.19G072400 Glycine max HOM05D003843 ORTHO05D004646 5.1e-74 281.2 150 91.3
Lalb_Chr24g0400701 Lupinus albus HOM05D003843 ORTHO05D004646 5.1e-74 281.2 150 92.0
SGA_v2.0_scaffold26G11383 Striga asiatica HOM05D003843 ORTHO05D004646 5.1e-74 281.2 150 91.3
SGA_v2.0_scaffold3G01428 Striga asiatica HOM05D003843 ORTHO05D004646 6.7e-74 280.8 150 91.3
Actinidia07000 Actinidia chinensis HOM05D003843 ORTHO05D004646 8.7e-74 280.4 150 92.7
Aqoxy2G00042 Aquilegia oxysepala HOM05D003843 ORTHO05D004646 8.7e-74 280.4 150 90.7
Peaxi162Scf00791g00019 Petunia axillaris HOM05D003843 ORTHO05D004646 8.7e-74 280.4 150 92.0
HanXRQChr06g0178281 Helianthus annuus HOM05D003843 ORTHO05D004646 1.1e-73 280.0 150 92.7
Duzib168G0367 Durio zibethinus HOM05D003843 ORTHO05D004646 1.9e-73 279.3 150 91.3
MSTRG.21332 Avicennia marina HOM05D003843 ORTHO05D004646 2.5e-73 278.9 150 91.3
ECA236G0656 Erigeron canadensis HOM05D003843 ORTHO05D004646 2.5e-73 278.9 150 91.3
Sc20g0005970 Simmondsia chinensis HOM05D003843 ORTHO05D004646 2.5e-73 278.9 150 91.3
ClCG02G024160 Citrullus lanatus HOM05D003843 ORTHO05D004646 4.3e-73 278.1 150 91.3
Sed0007264 Sechium edule HOM05D003843 ORTHO05D004646 4.3e-73 278.1 150 90.7
CAN.G1332.3 Capsicum annuum HOM05D003843 ORTHO05D004646 5.7e-73 277.7 150 91.3
CANSAT64G0238 Cannabis sativa HOM05D003843 ORTHO05D004646 7.4e-73 277.3 150 90.7
CsaV3_4G023170 Cucumis sativus L. HOM05D003843 ORTHO05D004646 7.4e-73 277.3 151 90.1
CsaV3_UNG234370 Cucumis sativus L. HOM05D003843 ORTHO05D004646 7.4e-73 277.3 151 90.1
EL10Ac1g01678 Beta vulgaris HOM05D003843 ORTHO05D004646 9.7e-73 276.9 150 91.3
MELO3C014699.2 Cucumis melo HOM05D003843 ORTHO05D004646 9.7e-73 276.9 150 90.7
CsaV3_4G017290 Cucumis sativus L. HOM05D003843 ORTHO05D004646 9.7e-73 276.9 150 90.7
PGSC0003DMG400032509 Solanum tuberosum HOM05D003843 ORTHO05D004646 1.3e-72 276.6 150 91.3
SEGI_33516 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 1.6e-72 276.2 150 90.7
FvH4_4g27570 Fragaria vesca HOM05D003843 ORTHO05D004646 2.2e-72 275.8 150 90.0
FAN07G2602 Fragaria x ananassa HOM05D003843 ORTHO05D004646 2.2e-72 275.8 150 90.0
FAN12G3037 Fragaria x ananassa HOM05D003843 ORTHO05D004646 2.2e-72 275.8 150 90.0
FAN12G3698 Fragaria x ananassa HOM05D003843 ORTHO05D004646 2.2e-72 275.8 150 90.0
Duzib150G0366 Durio zibethinus HOM05D003843 ORTHO05D004646 2.8e-72 275.4 150 90.7
Thhalv10001988m.g Eutrema salsugineum HOM05D003843 ORTHO05D004646 2.8e-72 275.4 150 90.7
Hund19273 Selenicereus undatus HOM05D003843 ORTHO05D004646 2.8e-72 275.4 150 88.7
Aa31LG5G8390 Aethionema arabicum HOM05D003843 ORTHO05D004646 3.7e-72 275.0 150 90.0
RcHm_v2.0_Chr4g0435421 Rosa chinensis HOM05D003843 ORTHO05D004646 3.7e-72 275.0 150 90.0
AL4G20470 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 4.8e-72 274.6 150 90.0
DCAR_013515 Daucus carota HOM05D003843 ORTHO05D004646 4.8e-72 274.6 150 89.3
A03p26810 Brassica napus HOM05D003843 ORTHO05D004646 8.2e-72 273.9 150 90.0
C03p32130 Brassica napus HOM05D003843 ORTHO05D004646 8.2e-72 273.9 150 90.0
BolC3t15555H Brassica oleracea HOM05D003843 ORTHO05D004646 8.2e-72 273.9 150 90.0
BraA03t11892Z Brassica rapa HOM05D003843 ORTHO05D004646 8.2e-72 273.9 150 90.0
PGSC0003DMG400028109 Solanum tuberosum HOM05D003843 ORTHO05D004646 8.2e-72 273.9 150 88.7
Pp3c9_2060 Physcomitrium patens HOM05D003843 ORTHO05D004646 1.8e-71 272.7 150 88.7
AT2G26990 Arabidopsis thaliana HOM05D003843 ORTHO05D004646 2.4e-71 272.3 150 89.3
vmacro04105 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 2.4e-71 272.3 153 88.9
DCAR_020626 Daucus carota HOM05D003843 ORTHO05D004646 3.1e-71 271.9 150 88.0
Sp4g08320 Schrenkiella parvula HOM05D003843 ORTHO05D004646 3.1e-71 271.9 150 88.7
Sopen10g031650 Solanum pennellii HOM05D003843 ORTHO05D004646 3.1e-71 271.9 150 87.3
BcaB01g03038 Brassica carinata HOM05D003843 ORTHO05D004646 4.1e-71 271.6 150 89.3
MBI19_g17996_MAGBIO Magnolia biondii HOM05D003843 ORTHO05D004646 4.1e-71 271.6 150 90.7
Mapoly0063s0071 Marchantia polymorpha HOM05D003843 ORTHO05D004646 4.1e-71 271.6 150 88.7
AagrBONN_evm.TU.Sc2ySwM_344.3619 Anthoceros agrestis HOM05D003843 ORTHO05D004646 5.3e-71 271.2 150 88.0
Pp3c17_10150 Physcomitrium patens HOM05D003843 ORTHO05D004646 5.3e-71 271.2 150 88.0
Solyc10g081150.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 5.3e-71 271.2 150 87.3
BcaB02g10062 Brassica carinata HOM05D003843 ORTHO05D004646 6.9e-71 270.8 150 89.3
BcaC02g10850 Brassica carinata HOM05D003843 ORTHO05D004646 6.9e-71 270.8 150 89.3
A07p17930 Brassica napus HOM05D003843 ORTHO05D004646 6.9e-71 270.8 150 89.3
C04p24530 Brassica napus HOM05D003843 ORTHO05D004646 6.9e-71 270.8 150 89.3
BolC4t23951H Brassica oleracea HOM05D003843 ORTHO05D004646 6.9e-71 270.8 150 89.3
BraA07t29511Z Brassica rapa HOM05D003843 ORTHO05D004646 6.9e-71 270.8 150 89.3
CARHR119240 Cardamine hirsuta HOM05D003843 ORTHO05D004646 6.9e-71 270.8 150 89.3
Oeu013457.1 Olea europaea HOM05D003843 ORTHO05D004646 9.0e-71 270.4 158 84.2
Pp3c15_2200 Physcomitrium patens HOM05D003843 ORTHO05D004646 2.0e-70 269.2 150 88.0
Carub.0004s0747 Capsella rubella HOM05D003843 ORTHO05D004646 2.6e-70 268.9 150 88.0
CAN.G128.106 Capsicum annuum HOM05D003843 ORTHO05D004646 2.6e-70 268.9 150 86.7
vmacro14282 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 1.7e-69 266.2 150 90.0
SMO117G0130 Selaginella moellendorffii HOM05D003843 ORTHO05D004646 2.2e-69 265.8 150 86.0
SEGI_33472 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 3.8e-69 265.0 149 85.9
CBR_g24102 Chara braunii HOM05D003843 ORTHO05D004646 1.1e-68 263.5 150 87.3
Sed0025468 Sechium edule HOM05D003843 ORTHO05D004646 2.5e-68 262.3 150 86.7
Hund04069 Selenicereus undatus HOM05D003843 ORTHO05D004646 2.0e-65 252.7 134 91.8
Lsat_1_v5_gn_8_85240 Lactuca sativa HOM05D003843 ORTHO05D004646 7.4e-65 250.8 156 81.4
BcaC01g04918 Brassica carinata HOM05D003843 ORTHO05D004646 3.7e-64 248.4 150 83.3
SHI24965 Sapria himalayana HOM05D003843 ORTHO05D004646 2.4e-63 245.7 130 90.8
HPP92_012450 Vanilla planifolia HOM05D003843 ORTHO05D004646 2.4e-63 245.7 131 90.1
COL.COLO4_24925 Corchorus olitorius HOM05D003843 ORTHO05D004646 1.2e-62 243.4 124 95.2
CARHR063930 Cardamine hirsuta HOM05D003843 ORTHO05D004646 6.5e-61 237.7 152 78.3
Dinv12305 Davidia involucrata HOM05D003843 ORTHO05D004646 3.7e-56 221.9 150 77.3
VMungo1309G2340 Vigna mungo HOM05D003843 ORTHO05D004646 7.7e-54 214.2 151 74.8
Haze_26275 Corylus avellana HOM05D003843 ORTHO05D004646 1.3e-53 213.4 150 70.0
PRCOL_00002476 Prasinoderma coloniale HOM05D003843 ORTHO05D004646 4.2e-52 208.4 150 68.0
MCO01G792 Micromonas commoda HOM05D003843 ORTHO05D004646 3.9e-50 201.8 150 64.7
Cre01.g030800 Chlamydomonas reinhardtii HOM05D003843 ORTHO05D004646 5.7e-49 198.0 151 64.2
CDE04G2865 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 4.1e-47 191.8 100 93.0
Cfa024421 Carpinus fangiana HOM05D003843 ORTHO05D004646 6.1e-43 177.9 153 54.2
Rhsim13G0197000 Rhododendron simsii HOM05D003843 ORTHO05D004646 4.1e-39 165.2 158 57.6
AL8G39810 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 1.3e-32 143.7 149 52.3
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 3.4e-25 119.0 147 46.3
SEGI_37910 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 1.7e-21 106.7 54 92.6
C03p49270 Brassica napus HOM05D003871 ORTHO05D004621 2.9e-16 89.4 151 39.1
ClCG10G014090 Citrullus lanatus HOM05D006109 ORTHO05D007647 4.6e-14 82.0 67 70.1
BcaC01g03723 Brassica carinata HOM05D003843 ORTHO05D091273 3.0e-13 79.3 152 35.5
Lsat_1_v5_gn_4_91020 Lactuca sativa HOM05D000919 ORTHO05D001187 7.5e-09 64.7 45 64.4
BcaB04g18969 Brassica carinata HOM05D003843 ORTHO05D092575 1.7e-08 63.5 50 56.0


User provided reference genes

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