Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20277 Corylus avellana HOM05D000223 ORTHO05D016846 8.8e-47 189.9 92 100.0
Haze_20282 Corylus avellana HOM05D000223 ORTHO05D016846 8.8e-47 189.9 92 100.0
CANSAT35G0549 Cannabis sativa HOM05D000223 ORTHO05D008670 7.7e-35 150.2 94 75.5
QL07p013384 Quercus lobata HOM05D000223 ORTHO05D008670 1.1e-33 146.4 94 73.4
Hma1.2p1_0031F.1_g018420 Hydrangea macrophylla HOM05D000223 ORTHO05D016846 5.5e-33 144.1 92 75.0
GSVIVG01025802001 Vitis vinifera HOM05D000223 ORTHO05D008670 1.2e-32 142.9 94 75.5
CiPaw.10G043700 Carya illinoinensis HOM05D000223 ORTHO05D008670 2.1e-32 142.1 94 74.5
Potri.016G030800 Populus trichocarpa HOM05D000223 ORTHO05D008670 2.7e-32 141.7 94 74.5
PGR142G0562 Punica granatum HOM05D000223 ORTHO05D008670 1.4e-31 139.4 94 71.3
RcHm_v2.0_Chr6g0284731 Rosa chinensis HOM05D000223 ORTHO05D008670 1.4e-31 139.4 94 71.3
ClCG10G016330 Citrullus lanatus HOM05D000223 ORTHO05D008670 1.8e-31 139.0 92 71.7
Prupe.7G035700 Prunus persica HOM05D000223 ORTHO05D008670 1.8e-31 139.0 94 69.1
MD12G1099600 Malus domestica HOM05D000223 ORTHO05D008670 2.3e-31 138.7 94 69.1
Lj1C1082G8 Lonicera japonica HOM05D000223 ORTHO05D008670 3.0e-31 138.3 94 72.3
Cpa.g.sc37.35 Carica papaya HOM05D000223 ORTHO05D008670 4.0e-31 137.9 94 70.2
Ciclev10011248m.g Citrus clementina HOM05D000223 ORTHO05D008670 4.0e-31 137.9 94 70.2
Atru.chr1.1351 Acer truncatum HOM05D000223 ORTHO05D008670 8.8e-31 136.7 94 68.1
Hma1.2p1_0031F.1_g018410 Hydrangea macrophylla HOM05D000223 ORTHO05D008670 8.8e-31 136.7 94 72.3
TWI53G0492 Tripterygium wilfordii HOM05D000223 ORTHO05D008670 8.8e-31 136.7 94 70.2
CsaV3_3G040010 Cucumis sativus L. HOM05D000223 ORTHO05D008670 1.2e-30 136.3 93 69.9
Manes.08G063732 Manihot esculenta HOM05D000223 ORTHO05D008670 1.2e-30 136.3 94 71.3
Sabra16G0034100 Salix brachista HOM05D000494 ORTHO05D008670 1.2e-30 136.3 94 71.3
Dinv00874 Davidia involucrata HOM05D000223 ORTHO05D016846 1.5e-30 136.0 94 71.3
Dinv30090 Davidia involucrata HOM05D000223 ORTHO05D008670 1.5e-30 136.0 94 71.3
TAR633G0654 Trochodendron aralioides HOM05D000223 ORTHO05D008670 1.5e-30 136.0 94 69.1
MELO3C009743.2 Cucumis melo HOM05D000223 ORTHO05D008670 2.6e-30 135.2 94 69.1
FAN15G2663 Fragaria x ananassa HOM05D000223 ORTHO05D008670 2.6e-30 135.2 94 68.1
DCAR_020602 Daucus carota HOM05D000223 ORTHO05D008670 3.3e-30 134.8 94 68.1
Eucgr.L02445 Eucalyptus grandis HOM05D000223 ORTHO05D008670 3.3e-30 134.8 94 68.1
FvH4_2g18940 Fragaria vesca HOM05D000223 ORTHO05D008670 3.3e-30 134.8 94 69.1
FAN24G3139 Fragaria x ananassa HOM05D000223 ORTHO05D008670 3.3e-30 134.8 94 69.1
Eucgr.K01673 Eucalyptus grandis HOM05D000223 ORTHO05D008670 4.4e-30 134.4 94 68.1
Lalb_Chr21g0316801 Lupinus albus HOM05D000223 ORTHO05D008670 4.4e-30 134.4 94 68.1
Carub.0004s2318 Capsella rubella HOM05D000223 ORTHO05D008670 7.5e-30 133.7 94 68.1
Nitab4.5_0002068g0040 Nicotiana tabacum HOM05D000223 ORTHO05D008670 9.7e-30 133.3 94 70.2
EL10Ac3g07290 Beta vulgaris HOM05D000223 ORTHO05D008670 1.3e-29 132.9 94 67.0
Duzib128G1945 Durio zibethinus HOM05D000223 ORTHO05D008670 1.3e-29 132.9 94 67.0
SGA_v2.0_scaffold69G23178 Striga asiatica HOM05D000223 ORTHO05D008670 2.2e-29 132.1 94 68.1
Cc06_g20510 Coffea canephora HOM05D000494 ORTHO05D008670 2.8e-29 131.7 94 68.1
Ah.04g150620 Amaranthus hybridus HOM05D000223 ORTHO05D008670 4.8e-29 131.0 94 66.0
Sed0010522 Sechium edule HOM05D000223 ORTHO05D008670 4.8e-29 131.0 94 66.0
BolC3t15109H Brassica oleracea HOM05D000223 ORTHO05D008670 6.3e-29 130.6 94 63.8
Nn7g36998 Nelumbo nucifera HOM05D000223 ORTHO05D008670 6.3e-29 130.6 94 68.1
CSS0040284 Camellia sinensis var. sinensis HOM05D000223 ORTHO05D008670 8.2e-29 130.2 94 69.1
Migut.J01618 Erythranthe guttata HOM05D000223 ORTHO05D008670 8.2e-29 130.2 94 66.0
Thecc.05G122400 Theobroma cacao HOM05D000223 ORTHO05D008670 8.2e-29 130.2 94 67.0
BcaB01g03508 Brassica carinata HOM05D000223 ORTHO05D008670 1.1e-28 129.8 94 62.8
HanXRQChr10g0298501 Helianthus annuus HOM05D000223 ORTHO05D008670 1.1e-28 129.8 94 68.1
BcaC01g05371 Brassica carinata HOM05D000223 ORTHO05D008670 1.8e-28 129.0 94 62.8
A03p23000 Brassica napus HOM05D000223 ORTHO05D008670 1.8e-28 129.0 94 62.8
MBI10_g42733_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D008670 1.8e-28 129.0 94 64.9
Aa31LG3G1240 Aethionema arabicum HOM05D000223 ORTHO05D008670 2.4e-28 128.6 94 62.8
ATR0724G099 Amborella trichopoda HOM05D000223 ORTHO05D008670 2.4e-28 128.6 93 67.7
C03p27270 Brassica napus HOM05D000223 ORTHO05D008670 2.4e-28 128.6 94 62.8
CARHR135980 Cardamine hirsuta HOM05D000223 ORTHO05D008670 2.4e-28 128.6 94 64.9
AUR62018399 Chenopodium quinoa HOM05D000223 ORTHO05D008670 2.4e-28 128.6 94 62.8
AUR62021044 Chenopodium quinoa HOM05D000223 ORTHO05D008670 3.1e-28 128.3 94 62.8
Gohir.D13G000200 Gossypium hirsutum HOM05D000223 ORTHO05D008670 4.1e-28 127.9 94 64.9
Gorai.013G001000 Gossypium raimondii HOM05D000223 ORTHO05D008670 4.1e-28 127.9 94 64.9
vmacro07765 Vaccinium macrocarpon HOM05D000088 ORTHO05D008670 5.3e-28 127.5 94 66.0
Actinidia17970 Actinidia chinensis HOM05D000494 ORTHO05D008670 7.0e-28 127.1 94 67.0
Thhalv10016363m.g Eutrema salsugineum HOM05D000223 ORTHO05D008670 7.0e-28 127.1 94 62.8
Glyma.02G162300 Glycine max HOM05D000223 ORTHO05D008670 7.0e-28 127.1 94 63.8
Sopen01g020840 Solanum pennellii HOM05D000223 ORTHO05D008670 7.0e-28 127.1 94 68.1
VMungo0720G1770 Vigna mungo HOM05D000223 ORTHO05D008670 7.0e-28 127.1 94 63.8
Sc25g0005540 Simmondsia chinensis HOM05D000223 ORTHO05D008670 9.1e-28 126.7 93 64.5
BraA03t11523Z Brassica rapa HOM05D000223 ORTHO05D008670 1.2e-27 126.3 94 61.7
AL4G38810 Arabidopsis lyrata HOM05D000223 ORTHO05D008670 1.6e-27 125.9 94 62.8
ECA247G3244 Erigeron canadensis HOM05D000223 ORTHO05D008670 2.0e-27 125.6 91 68.1
Solyc01g056690.4 Solanum lycopersicum HOM05D000223 ORTHO05D008670 2.0e-27 125.6 94 67.0
THA.LOC104814580 Tarenaya hassleriana HOM05D000223 ORTHO05D008670 2.7e-27 125.2 94 61.7
PSO384G3882 Papaver somniferum HOM05D000223 ORTHO05D008670 3.5e-27 124.8 94 61.7
RhsimUnG0018900 Rhododendron simsii HOM05D000494 ORTHO05D008670 3.5e-27 124.8 92 66.3
Sp4g23190 Schrenkiella parvula HOM05D000223 ORTHO05D008670 4.5e-27 124.4 94 62.8
Ca_05362_v3 Cicer arietinum L. HOM05D000223 ORTHO05D008670 5.9e-27 124.0 94 62.8
Gohir.A13G001700 Gossypium hirsutum HOM05D000223 ORTHO05D008670 5.9e-27 124.0 94 62.8
Hund19071 Selenicereus undatus HOM05D000223 ORTHO05D008670 7.7e-27 123.6 94 62.8
CAN.G197.1 Capsicum annuum HOM05D000223 ORTHO05D008670 1.7e-26 122.5 94 66.0
Peaxi162Scf00470g00048 Petunia axillaris HOM05D000223 ORTHO05D008670 2.2e-26 122.1 93 63.4
COL.COLO4_19401 Corchorus olitorius HOM05D000223 ORTHO05D008670 3.8e-26 121.3 94 61.7
Medtr1g050520 Medicago truncatula HOM05D000223 ORTHO05D008670 3.8e-26 121.3 94 61.7
MSTRG.19778 Avicennia marina HOM05D000088 ORTHO05D008670 5.0e-26 120.9 94 62.8
RhsimUnG0209300 Rhododendron simsii HOM05D000494 ORTHO05D008670 5.0e-26 120.9 117 54.7
Os01g0541900 Oryza sativa ssp. japonica HOM05D000223 ORTHO05D008670 6.5e-26 120.6 99 55.6
Lj5g0002002 Lotus japonicus HOM05D000223 ORTHO05D008670 8.5e-26 120.2 94 61.7
SalBow6G2441 Salvia bowleyana HOM05D000088 ORTHO05D008670 1.1e-25 119.8 94 63.8
TPR.G16472 Trifolium pratense HOM05D000223 ORTHO05D008670 1.1e-25 119.8 94 61.7
SEGI_28896 Sequoiadendron giganteum HOM05D000223 ORTHO05D016846 2.5e-25 118.6 94 56.4
HPP92_021586 Vanilla planifolia HOM05D000394 ORTHO05D000299 7.2e-25 117.1 94 56.4
Aqoxy1G00057 Aquilegia oxysepala HOM05D000223 ORTHO05D008670 1.2e-24 116.3 90 61.1
Lsat_1_v5_gn_9_32241 Lactuca sativa HOM05D000223 ORTHO05D008670 1.8e-23 112.5 92 63.0
Pp3c4_23550 Physcomitrium patens HOM05D000223 ORTHO05D008670 1.8e-20 102.4 94 52.1
SMO115G0162 Selaginella moellendorffii HOM05D000223 ORTHO05D008670 2.7e-19 98.6 94 55.3
BcaNung05542 Brassica carinata HOM05D000088 ORTHO05D008670 3.5e-19 98.2 94 53.2
AagrBONN_evm.TU.Sc2ySwM_368.1033 Anthoceros agrestis HOM05D000223 ORTHO05D008670 4.5e-19 97.8 94 54.3
Atru.chr1.1332 Acer truncatum HOM05D000223 ORTHO05D008670 1.1e-17 93.2 56 71.4
CSS0032775 Camellia sinensis var. sinensis HOM05D000223 ORTHO05D016846 1.7e-10 69.3 52 59.6
CDE02G3287 Ceratophyllum demersum HOM05D000223 ORTHO05D008670 1.7e-10 69.3 94 44.7
PRCOL_00003233 Prasinoderma coloniale HOM05D000494 ORTHO05D008670 1.1e-09 66.6 93 37.6
Cre17.g715700 Chlamydomonas reinhardtii HOM05D000088 ORTHO05D008670 3.3e-09 65.1 88 38.6
MCO08G027 Micromonas commoda HOM05D000494 ORTHO05D008670 7.3e-09 63.9 80 37.5
Nitab4.5_0001513g0020 Nicotiana tabacum HOM05D000223 ORTHO05D016846 4.7e-08 61.2 36 83.3
Nitab4.5_0001958g0020 Nicotiana tabacum HOM05D000223 ORTHO05D016846 2.3e-07 58.9 36 80.6
arahy.Tifrunner.gnm1.ann1.5JYC56 Arachis hypogaea HOM05D000223 ORTHO05D008670 7.5e-06 53.9 92 38.0
arahy.Tifrunner.gnm1.ann1.DZ1TRF Arachis hypogaea HOM05D000223 ORTHO05D008670 7.5e-06 53.9 92 38.0


User provided reference genes

Program Settings