Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 1.7e-232 808.9 393 100.0
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 2.1e-174 615.9 348 89.1
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 3.1e-141 505.8 363 70.0
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 1.5e-140 503.4 368 70.4
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 4.2e-138 495.4 367 69.8
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 4.6e-137 491.9 367 70.0
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 5.8e-124 448.4 364 65.1
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 1.6e-121 440.3 368 62.2
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 1.6e-121 440.3 372 62.6
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.7e-121 439.5 358 65.1
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.1e-118 429.9 376 61.4
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 1.8e-117 426.8 355 62.5
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 5.3e-117 425.2 377 61.0
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 9.0e-117 424.5 362 60.5
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 2.9e-115 419.5 371 62.8
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 2.5e-114 416.4 364 60.7
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 2.5e-114 416.4 367 58.9
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 1.6e-113 413.7 360 60.6
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.0e-112 411.0 366 60.1
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 5.1e-112 408.7 367 59.9
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 8.7e-112 407.9 367 58.9
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 2.5e-111 406.4 368 61.4
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 5.7e-111 405.2 370 58.6
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.7e-111 405.2 370 58.6
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 2.2e-110 403.3 355 60.3
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 2.2e-110 403.3 362 58.0
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 2.8e-110 402.9 375 58.1
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 2.8e-110 402.9 375 58.1
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 8.2e-110 401.4 366 57.9
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 9.1e-109 397.9 364 58.5
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 7.7e-108 394.8 366 60.1
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 7.7e-108 394.8 366 60.1
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.7e-107 393.7 360 60.6
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 5.0e-107 392.1 363 58.4
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.1e-106 391.0 362 58.0
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.4e-106 390.6 357 58.0
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.4e-106 390.6 393 53.9
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.4e-106 390.6 393 53.9
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.4e-106 390.6 362 59.1
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.9e-106 390.2 362 58.0
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 9.4e-106 387.9 372 55.4
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.6e-105 387.1 396 53.8
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 2.1e-105 386.7 356 58.7
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 1.1e-101 374.4 367 55.3
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 1.8e-101 373.6 374 55.1
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 5.3e-101 372.1 342 55.3
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 6.9e-101 371.7 356 56.2
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 2.6e-100 369.8 365 55.3
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 3.4e-100 369.4 372 54.6
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 4.5e-100 369.0 356 57.0
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 1.9e-98 363.6 368 54.1
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.9e-98 363.6 374 54.0
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 9.4e-98 361.3 380 52.9
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 9.4e-98 361.3 361 55.1
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 9.4e-98 361.3 353 54.1
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.1e-97 360.1 361 54.0
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 6.1e-97 358.6 332 59.9
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 7.9e-97 358.2 356 54.2
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 5.2e-96 355.5 365 53.2
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 8.8e-96 354.8 359 55.4
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 5.7e-95 352.1 352 52.8
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 1.3e-94 350.9 350 53.4
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.7e-94 349.4 359 54.0
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 4.8e-94 349.0 355 53.2
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 6.3e-94 348.6 350 53.1
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 8.2e-94 348.2 361 52.9
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 1.1e-93 347.8 323 57.0
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.4e-93 347.4 357 54.3
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 2.4e-93 346.7 361 52.9
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 2.4e-93 346.7 363 50.7
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 2.4e-93 346.7 350 52.6
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 5.3e-93 345.5 354 54.8
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 7.0e-93 345.1 353 52.4
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 7.0e-93 345.1 364 52.5
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 2.0e-92 343.6 353 53.0
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 2.0e-92 343.6 359 51.8
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 2.0e-92 343.6 350 52.3
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 5.9e-92 342.0 361 53.2
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 7.7e-92 341.7 379 51.7
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 1.0e-91 341.3 371 51.5
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 1.7e-91 340.5 365 52.1
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.7e-91 340.5 370 50.3
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 6.5e-91 338.6 357 52.1
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 6.5e-91 338.6 350 50.9
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 8.5e-91 338.2 358 51.7
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.5e-90 337.4 359 53.8
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 2.5e-90 336.7 359 53.2
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 5.5e-90 335.5 358 52.5
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 5.5e-90 335.5 355 51.5
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 1.2e-89 334.3 357 51.0
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 2.1e-89 333.6 292 56.8
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 2.1e-89 333.6 271 62.0
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 4.7e-89 332.4 357 49.9
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 6.1e-89 332.0 357 51.8
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 6.1e-89 332.0 358 52.2
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 8.0e-89 331.6 355 50.7
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 1.0e-88 331.3 359 52.9
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 3.0e-88 329.7 370 49.5
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 5.2e-88 328.9 351 52.1
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 1.2e-87 327.8 353 51.0
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.8e-86 322.4 367 52.6
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 6.3e-86 322.0 359 50.7
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 8.2e-86 321.6 371 49.9
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 8.2e-86 321.6 374 49.7
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 1.4e-85 320.9 354 50.8
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 1.3e-83 314.3 365 50.7
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 1.3e-83 314.3 353 49.3
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.7e-83 313.9 378 47.1
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.9e-83 313.2 273 59.0
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 5.0e-83 312.4 356 50.8
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 8.5e-83 311.6 381 49.1
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 8.5e-83 311.6 353 49.0
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.9e-82 310.5 362 49.7
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 2.5e-82 310.1 271 59.0
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 8.0e-81 305.1 316 52.5
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 8.0e-81 305.1 356 48.6
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 6.8e-80 302.0 270 55.6
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 2.6e-79 300.1 268 56.0
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 1.7e-78 297.4 312 52.2
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 1.7e-78 297.4 352 48.0
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 1.8e-77 293.9 272 55.5
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.3e-75 287.0 368 45.4
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.6e-73 280.8 363 47.4
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.6e-73 280.8 397 43.1
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 2.8e-73 280.0 364 45.6
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 3.0e-72 276.6 352 47.4
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.0e-71 273.9 281 50.9
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 8.3e-70 268.5 354 46.3
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.4e-69 267.7 227 58.1
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 4.1e-69 266.2 336 47.9
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 7.0e-69 265.4 308 47.7
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 7.0e-69 265.4 315 51.4
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 2.0e-68 263.8 311 47.9
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 2.7e-68 263.5 315 47.6
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 3.3e-66 256.5 230 57.4
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 4.3e-66 256.1 271 51.3
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 1.6e-65 254.2 367 43.6
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 3.6e-65 253.1 272 49.6
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 3.6e-65 253.1 272 49.6
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 2.3e-64 250.4 272 49.3
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.9e-62 243.4 354 44.6
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 9.2e-61 238.4 314 46.2
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 9.8e-55 218.4 312 38.5
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 8.3e-54 215.3 218 53.2
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 9.2e-53 211.8 234 48.7
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 6.0e-52 209.1 290 44.8
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.5e-50 203.8 316 41.5
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 4.0e-48 196.4 268 44.8
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.2e-46 190.7 326 36.8
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 2.5e-42 177.2 218 44.5
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 6.8e-40 169.1 115 63.5
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 8.4e-38 162.2 254 39.0
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 7.1e-37 159.1 185 51.4
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 1.6e-36 157.9 203 49.8
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 1.1e-34 151.8 450 28.4
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 2.5e-34 150.6 165 54.5
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 1.2e-33 148.3 194 43.8
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.1e-32 145.2 164 47.0
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 2.4e-32 144.1 237 37.1
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 7.6e-31 139.0 152 56.6
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 1.7e-30 137.9 200 44.5
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 3.2e-29 133.7 150 47.3
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 5.4e-29 132.9 287 32.1
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.3e-25 121.7 163 44.2
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 2.0e-23 114.4 77 61.0
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 5.8e-23 112.8 112 48.2
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 5.4e-21 106.3 102 55.9
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 6.7e-19 99.4 105 44.8
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 2.5e-18 97.4 291 29.2
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 2.8e-17 94.0 92 55.4
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 4.8e-17 93.2 44 95.5
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 2.0e-15 87.8 120 39.2
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 4.5e-15 86.7 65 60.0
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 7.6e-15 85.9 65 58.5
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 1.3e-14 85.1 132 33.3
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 2.2e-14 84.3 103 41.7
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.5e-10 71.6 69 53.6
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 1.9e-10 71.2 78 48.7
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 5.6e-10 69.7 55 58.2
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.3e-09 68.6 123 39.8
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 1.6e-09 68.2 56 55.4
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 6.2e-09 66.2 45 66.7
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 4.5e-07 60.1 46 60.9
Cfa022807 Carpinus fangiana HOM05D003781 ORTHO05D004299 4.9e-06 56.6 304 24.7


User provided reference genes

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