Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 2.8e-247 858.2 445 100.0
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 3.2e-187 658.7 449 81.5
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 1.0e-164 583.9 448 73.0
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 5.7e-160 568.2 440 69.8
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 6.3e-151 538.1 476 64.9
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 1.9e-147 526.6 435 67.4
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 1.4e-145 520.4 444 66.0
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 2.3e-145 519.6 435 65.5
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 8.9e-145 517.7 425 66.8
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 2.6e-144 516.2 423 66.7
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 7.5e-144 514.6 428 66.6
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 2.9e-143 512.7 423 67.1
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 8.3e-143 511.1 440 65.7
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 1.3e-140 503.8 418 66.3
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 2.3e-140 503.1 471 61.6
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.9e-140 502.3 421 66.3
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.9e-140 502.3 421 66.3
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 6.6e-140 501.5 453 64.5
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 1.1e-139 500.7 418 67.5
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 2.5e-139 499.6 421 66.5
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 3.3e-139 499.2 418 65.8
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 3.3e-139 499.2 447 64.9
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 9.5e-139 497.7 415 65.8
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.6e-138 496.9 449 63.0
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 1.2e-136 490.7 446 63.7
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 7.5e-136 488.0 435 63.2
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 2.4e-134 483.0 459 59.3
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 2.1e-133 479.9 442 61.8
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 1.9e-131 473.4 446 60.5
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.2e-130 470.7 404 66.3
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 1.2e-128 464.2 430 63.0
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 3.7e-127 459.1 444 60.1
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 2.7e-125 453.0 423 59.8
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 3.5e-125 452.6 335 71.9
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 1.7e-124 450.3 449 60.8
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 6.6e-124 448.4 444 59.0
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.1e-123 447.6 423 60.3
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.6e-123 445.3 281 80.8
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 5.6e-123 445.3 444 58.6
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 3.6e-122 442.6 438 58.4
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 8.1e-122 441.4 421 60.8
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 8.1e-122 441.4 444 58.3
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 1.1e-121 441.0 421 59.9
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 1.4e-121 440.7 448 58.3
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.8e-121 440.3 281 79.7
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.2e-121 438.7 316 73.1
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 1.2e-120 437.6 446 57.0
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 2.0e-120 436.8 459 56.9
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 4.4e-120 435.6 447 57.5
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 5.8e-120 435.3 442 58.4
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 8.4e-119 431.4 358 67.0
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 1.4e-118 430.6 421 58.9
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.1e-118 428.3 281 78.6
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 7.1e-118 428.3 440 56.6
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 7.8e-117 424.9 421 58.2
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.1e-115 421.0 306 72.9
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 2.5e-115 419.9 436 57.6
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 2.5e-115 419.9 435 57.0
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 7.3e-115 418.3 454 55.1
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.6e-114 417.2 360 63.9
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 6.2e-114 415.2 422 58.5
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 2.4e-113 413.3 458 55.0
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 9.0e-113 411.4 420 58.1
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 7.6e-112 408.3 418 55.0
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 1.3e-111 407.5 384 60.4
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 2.2e-111 406.8 445 55.3
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 6.4e-111 405.2 424 54.7
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 5.4e-110 402.1 461 53.4
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 7.1e-110 401.7 446 54.9
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 1.6e-109 400.6 443 56.2
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 2.1e-109 400.2 423 55.6
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 4.6e-109 399.1 436 53.9
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 1.0e-108 397.9 436 53.7
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 1.0e-108 397.9 436 53.7
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 1.3e-108 397.5 455 54.7
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 1.7e-108 397.1 353 63.5
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.3e-108 396.7 353 63.5
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 1.5e-107 394.0 314 66.9
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 1.9e-107 393.7 436 53.4
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 2.5e-107 393.3 407 54.3
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 3.3e-107 392.9 421 55.1
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 4.3e-107 392.5 315 67.0
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 1.3e-106 391.0 448 53.1
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 2.8e-106 389.8 441 54.2
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 8.1e-106 388.3 445 53.5
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 3.1e-105 386.3 439 53.5
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 3.1e-105 386.3 396 57.3
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 5.3e-105 385.6 452 51.5
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 1.5e-104 384.0 441 53.5
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 5.8e-104 382.1 441 53.3
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 9.9e-104 381.3 437 54.0
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 1.3e-103 380.9 380 58.4
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 1.3e-103 380.9 306 66.7
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 2.2e-103 380.2 441 53.1
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 5.4e-102 375.6 483 48.7
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 7.1e-102 375.2 442 52.7
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 2.7e-101 373.2 357 60.8
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 4.6e-101 372.5 346 59.8
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 8.1e-98 361.7 442 50.7
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 8.1e-98 361.7 447 50.3
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.4e-97 360.9 431 52.0
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 5.8e-96 355.5 465 49.5
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 7.6e-96 355.1 429 50.6
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 8.7e-92 341.7 295 62.7
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.3e-90 337.8 422 51.4
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.3e-90 337.8 442 48.4
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 1.3e-84 317.8 283 60.8
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.3e-74 282.3 372 47.3
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 5.3e-73 279.3 358 48.6
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 2.2e-71 273.9 227 63.9
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 2.6e-59 233.8 127 92.9
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 2.2e-55 220.7 148 80.4
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 1.4e-49 201.4 124 82.3
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 3.5e-48 196.8 238 51.7
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 1.4e-44 184.9 453 33.1
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 2.8e-42 177.2 348 38.5
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 4.1e-41 173.3 434 34.3
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 5.0e-31 139.8 104 71.2
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 2.8e-29 134.0 433 28.6
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 5.2e-28 129.8 106 67.0
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.2e-25 120.6 81 77.8
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 7.0e-25 119.4 92 68.5
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.9e-22 111.3 101 65.3
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 9.8e-19 99.0 154 37.7
Gohir.A11G262000 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.9e-09 68.2 91 47.3
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 4.1e-09 67.0 60 55.0
TAR633G1840 Trochodendron aralioides HOM05D005892 ORTHO05D415453 5.4e-09 66.6 54 68.5
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.3e-07 62.0 93 39.8


User provided reference genes

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