Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 0.0e+00 1322.4 665 100.0
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.8e-311 1072.0 697 81.3
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 6.8e-266 920.6 697 71.3
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 5.2e-258 894.4 696 69.7
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.5e-209 733.4 706 61.3
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 2.2e-208 729.6 701 59.3
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 4.2e-207 725.3 703 58.9
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 5.7e-204 714.9 704 58.4
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 1.8e-202 709.9 703 57.3
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 9.0e-202 707.6 705 59.9
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 5.9e-201 704.9 699 57.2
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 5.0e-200 701.8 702 57.5
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 3.2e-199 699.1 704 57.7
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 2.5e-196 689.5 702 56.6
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.7e-195 686.8 702 57.0
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 1.7e-192 676.8 728 54.4
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.5e-191 672.9 705 56.6
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 7.9e-190 667.9 699 56.5
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 1.1e-188 664.1 702 55.4
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 2.6e-188 662.9 699 56.1
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.7e-187 660.2 701 55.5
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 8.2e-187 657.9 701 55.2
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 3.1e-186 656.0 706 55.1
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 5.9e-185 651.7 701 54.8
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 3.2e-183 646.0 696 54.3
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 1.6e-182 643.7 698 54.2
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 2.7e-182 642.9 704 56.1
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 3.0e-181 639.4 701 53.8
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 1.5e-180 637.1 688 53.5
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 5.7e-180 635.2 697 53.9
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 6.3e-179 631.7 695 54.4
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 9.1e-178 627.9 697 53.7
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 3.5e-177 625.9 704 53.0
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 5.9e-177 625.2 706 54.7
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 6.5e-176 621.7 725 52.0
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 1.1e-175 620.9 715 51.7
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 1.9e-175 620.2 695 52.8
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 4.7e-174 615.5 728 51.4
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 4.7e-174 615.5 728 51.5
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 6.1e-174 615.1 710 51.4
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 1.2e-172 610.9 687 51.4
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 6.3e-171 605.1 713 51.1
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 1.1e-170 604.4 731 50.2
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 4.1e-170 602.4 700 51.3
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 5.3e-170 602.1 701 50.5
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.6e-169 600.5 702 51.3
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 2.2e-168 596.7 703 50.8
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 2.2e-168 596.7 685 51.4
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 6.5e-168 595.1 703 51.1
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 4.2e-167 592.4 699 51.1
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 1.0e-165 587.8 699 49.9
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 2.0e-164 583.6 703 51.2
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 2.6e-164 583.2 702 50.9
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 1.4e-162 577.4 674 51.6
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 2.4e-162 576.6 698 50.4
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 3.1e-162 576.2 695 48.8
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 1.2e-161 574.3 698 49.6
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 2.9e-160 569.7 698 48.7
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 1.1e-159 567.8 707 48.5
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 1.9e-159 567.0 606 54.8
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.2e-158 564.3 701 48.8
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 1.4e-157 560.8 706 47.7
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 1.8e-157 560.5 703 48.1
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 1.5e-156 557.4 701 48.9
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.8e-155 553.1 694 48.6
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 1.8e-154 550.4 549 58.1
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 3.1e-154 549.7 700 47.7
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 9.2e-154 548.1 700 48.0
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.6e-153 547.4 547 57.6
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.5e-151 540.8 674 48.7
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 4.7e-150 535.8 694 47.7
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 6.1e-150 535.4 702 47.0
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 2.4e-146 523.5 707 46.7
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 5.4e-146 522.3 712 47.2
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 2.5e-143 513.5 712 45.8
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 5.6e-143 512.3 699 45.6
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 1.6e-142 510.8 677 45.3
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 3.6e-142 509.6 700 44.9
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 5.2e-141 505.8 711 45.4
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 5.2e-141 505.8 697 44.9
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 1.2e-140 504.6 755 43.4
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 2.0e-140 503.8 706 44.1
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 3.4e-140 503.1 670 47.2
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 5.8e-140 502.3 707 44.6
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 1.1e-138 498.0 680 44.6
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 1.9e-138 497.3 697 43.9
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 1.9e-138 497.3 707 44.8
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 2.1e-137 493.8 714 43.4
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 4.6e-137 492.7 670 43.9
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 1.7e-136 490.7 697 43.9
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 2.3e-136 490.3 683 47.1
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 5.1e-136 489.2 693 43.4
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 1.9e-135 487.3 694 43.2
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 7.3e-135 485.3 697 43.2
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 2.1e-134 483.8 697 43.2
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 2.8e-134 483.4 684 44.6
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 6.2e-134 482.3 712 43.1
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 8.1e-134 481.9 726 42.3
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.8e-133 480.7 457 58.4
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 4.0e-133 479.6 696 43.1
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 7.5e-132 475.3 711 42.8
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 9.9e-132 474.9 689 43.7
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 3.5e-129 466.5 702 43.2
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 4.6e-129 466.1 683 43.0
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 4.6e-129 466.1 703 42.7
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.0e-128 464.9 703 42.5
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 1.7e-128 464.2 694 43.4
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 1.5e-127 461.1 702 43.2
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 8.9e-125 451.8 700 42.6
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 3.4e-124 449.9 703 42.0
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 7.6e-124 448.7 706 42.2
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 7.1e-122 442.2 702 42.3
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 2.1e-121 440.7 712 39.9
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 4.6e-121 439.5 702 42.2
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 1.0e-120 438.3 448 56.0
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 3.9e-120 436.4 647 43.3
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 2.1e-118 430.6 711 39.8
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 6.9e-117 425.6 711 39.4
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 3.4e-116 423.3 698 41.5
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 6.4e-115 419.1 666 40.8
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 2.3e-112 410.6 717 39.5
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 3.9e-112 409.8 588 44.0
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.6e-110 404.4 672 40.5
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 1.3e-107 394.8 673 41.0
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 8.4e-107 392.1 387 56.6
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 1.2e-105 388.3 679 41.8
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 1.1e-103 381.7 706 38.5
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.5e-103 381.3 227 85.9
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 1.4e-101 374.8 687 38.7
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 5.8e-100 369.4 416 52.9
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 1.1e-98 365.2 368 55.7
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.2e-97 361.7 383 56.4
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 1.3e-96 358.2 393 52.9
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.7e-89 334.0 418 50.0
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 6.3e-86 322.8 510 41.8
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 3.0e-80 303.9 287 56.1
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 4.3e-79 300.1 452 44.7
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 1.4e-74 285.0 284 56.7
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 4.2e-66 256.9 635 31.5
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 5.7e-63 246.5 632 31.3
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 7.2e-58 229.6 260 47.3
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 2.7e-57 227.6 268 46.6
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 1.0e-56 225.7 262 49.6
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 5.2e-56 223.4 262 53.8
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 8.8e-56 222.6 653 29.6
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 3.4e-55 220.7 489 35.2
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 3.6e-49 200.7 255 47.5
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.0e-48 199.1 177 61.0
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 3.0e-48 197.6 648 29.6
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 1.7e-46 191.8 493 30.6
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 2.4e-45 188.0 258 48.8
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.1e-45 187.6 411 37.0
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 3.5e-44 184.1 308 39.3
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 5.9e-44 183.3 314 38.9
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 5.4e-37 160.2 95 81.1
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.1e-29 136.0 203 47.3
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.1e-29 136.0 125 53.6
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.2e-29 134.4 222 38.7
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.0e-27 129.4 253 40.3
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 3.0e-27 127.9 203 40.4
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 1.5e-26 125.6 404 28.7
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.1e-25 121.7 221 38.0
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 8.1e-25 119.8 269 38.7
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 5.1e-19 100.5 112 55.4
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 1.6e-17 95.5 212 32.5
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 2.6e-15 88.2 87 50.6
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 4.4e-15 87.4 95 50.5
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 9.9e-15 86.3 263 30.4
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 3.2e-13 81.3 70 61.4
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 9.6e-10 69.7 220 27.7
CSS0023890 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 6.8e-08 63.5 40 70.0
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.5e-07 62.4 110 40.0


User provided reference genes

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