Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 7.7e-179 630.6 367 100.0
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 9.2e-156 553.9 394 86.0
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 4.4e-142 508.4 377 77.5
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 2.4e-111 406.4 375 63.7
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 3.4e-102 375.9 394 60.4
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 3.8e-93 345.9 387 59.2
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 4.1e-79 299.3 370 53.2
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 5.0e-77 292.4 367 52.3
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 3.6e-75 286.2 364 49.2
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 4.7e-75 285.8 383 49.3
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 4.0e-74 282.7 366 50.0
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 1.7e-69 267.3 371 50.1
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 2.9e-69 266.5 365 47.9
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.9e-69 266.5 368 53.0
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 8.0e-67 258.5 367 49.3
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 1.2e-65 254.6 373 51.7
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 7.5e-65 251.9 411 46.2
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 2.8e-64 250.0 365 50.7
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 3.7e-64 249.6 395 48.9
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 4.1e-63 246.1 392 44.4
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.3e-61 240.4 392 44.1
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 5.0e-61 239.2 393 49.4
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 8.6e-61 238.4 393 44.5
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 3.3e-60 236.5 399 45.4
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 4.3e-60 236.1 392 43.9
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.1e-59 233.8 392 43.4
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 2.8e-59 233.4 399 45.1
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.6e-59 233.0 391 43.5
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 2.6e-57 226.9 401 47.1
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 1.3e-56 224.6 398 45.0
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 4.1e-55 219.5 392 44.4
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 8.6e-53 211.8 395 41.5
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.9e-52 210.7 376 46.3
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 2.8e-51 206.8 378 43.9
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 3.1e-50 203.4 378 44.4
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 5.2e-50 202.6 397 46.6
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.6e-49 200.3 384 41.7
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 4.4e-49 199.5 386 42.2
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 4.4e-49 199.5 389 43.4
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 9.8e-49 198.4 403 46.7
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 9.8e-49 198.4 380 52.1
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 2.2e-48 197.2 393 43.5
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.7e-48 196.4 382 44.0
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 3.7e-48 196.4 349 42.4
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 6.4e-48 195.7 381 49.6
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.1e-47 194.9 384 43.2
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 1.4e-47 194.5 391 39.1
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 7.0e-47 192.2 378 41.8
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 6.0e-46 189.1 372 42.7
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 5.0e-45 186.0 379 45.9
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 1.1e-44 184.9 407 45.2
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 1.5e-44 184.5 296 45.3
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 5.6e-44 182.6 333 42.6
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 7.3e-44 182.2 368 45.1
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.2e-43 181.4 370 41.9
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 2.8e-43 180.3 389 41.9
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.1e-42 178.3 370 41.4
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 1.2e-41 174.9 375 40.0
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 1.3e-40 171.4 269 44.6
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 1.7e-40 171.0 450 37.1
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.9e-40 170.2 433 35.1
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 8.3e-40 168.7 248 47.2
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.9e-39 167.5 369 38.5
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 2.4e-39 167.2 373 44.0
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 4.1e-39 166.4 408 45.3
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 5.4e-39 166.0 411 42.3
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 7.1e-39 165.6 264 45.8
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 1.2e-38 164.9 375 41.6
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 1.6e-38 164.5 380 39.2
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.5e-38 163.3 400 41.0
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 1.0e-37 161.8 371 38.8
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 1.3e-37 161.4 375 37.6
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 1.9e-36 157.5 383 34.2
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.6e-35 154.5 284 39.4
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.1e-35 154.1 219 47.5
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.1e-34 151.8 238 47.1
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 2.4e-34 150.6 214 45.3
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 3.1e-34 150.2 371 36.9
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 3.1e-34 150.2 300 42.0
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 2.2e-32 144.1 265 43.8
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.4e-31 141.4 379 39.6
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 2.4e-31 140.6 158 51.3
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.2e-31 140.2 421 39.0
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 7.1e-31 139.0 368 39.1
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 2.3e-29 134.0 289 40.5
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 5.1e-29 132.9 359 36.8
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 8.7e-29 132.1 362 35.4
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 1.5e-28 131.3 136 55.1
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 1.9e-28 131.0 303 40.3
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.2e-27 128.3 221 40.7
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 1.6e-27 127.9 369 42.0
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.6e-27 127.9 381 33.3
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 2.1e-27 127.5 210 41.0
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 4.7e-27 126.3 385 35.6
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 8.1e-27 125.6 359 31.8
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.1e-26 123.6 376 37.8
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 1.5e-25 121.3 265 38.9
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 2.0e-25 120.9 274 38.0
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 3.4e-25 120.2 364 33.8
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 1.7e-24 117.9 374 34.0
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.9e-24 117.1 122 58.2
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 3.8e-24 116.7 271 37.3
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 4.9e-24 116.3 397 31.5
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 8.4e-24 115.5 323 40.9
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 2.4e-23 114.0 370 35.9
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 1.2e-22 111.7 218 48.2
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 4.6e-22 109.8 367 37.1
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 7.8e-22 109.0 206 40.8
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 1.7e-21 107.8 370 32.7
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 5.1e-21 106.3 372 32.5
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 5.1e-21 106.3 371 33.7
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 5.1e-21 106.3 374 31.3
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 5.1e-21 106.3 137 67.2
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 5.1e-21 106.3 387 33.1
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 6.6e-21 105.9 157 43.3
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 6.6e-21 105.9 220 48.6
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 1.5e-20 104.8 146 45.2
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.5e-20 104.8 51 92.2
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 1.9e-20 104.4 368 31.0
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 5.6e-20 102.8 381 34.4
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 5.6e-20 102.8 134 46.3
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 9.6e-20 102.1 147 44.9
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 2.1e-19 100.9 140 46.4
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 2.8e-19 100.5 374 31.0
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.8e-19 100.5 178 38.2
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 1.4e-18 98.2 368 30.7
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.4e-18 97.4 371 31.0
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 3.1e-18 97.1 361 31.0
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 5.3e-18 96.3 366 30.3
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 5.3e-18 96.3 363 29.8
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 5.3e-18 96.3 133 45.1
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.2e-17 95.1 334 28.1
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 1.5e-17 94.7 139 43.2
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 7.6e-17 92.4 91 50.5
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 9.9e-17 92.0 130 54.6
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 9.9e-17 92.0 81 64.2
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.3e-16 91.7 72 58.3
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 1.7e-16 91.3 137 46.0
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 1.7e-16 91.3 137 46.0
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 2.9e-16 90.5 364 31.0
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 3.8e-16 90.1 364 31.0
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 3.8e-16 90.1 136 50.0
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 1.1e-15 88.6 119 47.1
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 1.4e-15 88.2 355 28.2
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 2.4e-15 87.4 364 29.1
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 2.4e-15 87.4 364 29.1
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 2.4e-15 87.4 364 29.1
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.4e-15 87.4 207 40.1
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 1.6e-14 84.7 78 59.0
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 2.1e-14 84.3 363 30.0
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 2.1e-14 84.3 60 63.3
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 2.7e-14 84.0 39 92.3
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 2.7e-14 84.0 39 92.3
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 3.5e-14 83.6 53 71.7
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 3.5e-14 83.6 53 71.7
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 4.6e-14 83.2 137 39.4
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 1.8e-13 81.3 86 50.0
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 3.7e-11 73.6 124 40.3
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 1.1e-10 72.0 60 63.3
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.8e-10 71.2 67 55.2
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 5.3e-10 69.7 42 69.0
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 9.0e-10 68.9 72 47.2
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.6e-09 67.4 71 46.5
Potri.016G059400 Populus trichocarpa HOM05D014635 ORTHO05D014310 2.2e-08 64.3 113 35.4
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.2e-08 64.3 37 70.3
Sabra16G0062200 Salix brachista HOM05D014635 ORTHO05D014310 1.1e-07 62.0 110 33.6
QL07p024385 Quercus lobata HOM05D046221 ORTHO05D014310 1.9e-07 61.2 216 25.5
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 9.3e-07 58.9 43 53.5
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.2e-06 58.5 37 62.2
QL07p024250 Quercus lobata HOM05D046221 ORTHO05D014310 1.6e-06 58.2 302 27.5
Rhsim03G0005000 Rhododendron simsii HOM05D003648 ORTHO05D014310 2.1e-06 57.8 142 27.5
Manes.08G044100 Manihot esculenta HOM05D014635 ORTHO05D014310 3.5e-06 57.0 121 34.7
Thecc.05G174100 Theobroma cacao HOM05D014635 ORTHO05D014310 3.5e-06 57.0 144 31.9


User provided reference genes

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