Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_19994 Corylus avellana HOM05D002612 ORTHO05D002859 8.9e-44 179.9 90 100.0
Cfa020162 Carpinus fangiana HOM05D002612 ORTHO05D002859 1.7e-31 139.0 73 93.2
CiPaw.10G026200 Carya illinoinensis HOM05D002612 ORTHO05D002859 4.4e-27 124.4 73 86.3
QL07p023812 Quercus lobata HOM05D002612 ORTHO05D002859 6.0e-24 114.0 74 79.7
PGR142G1191 Punica granatum HOM05D002612 ORTHO05D002859 4.7e-21 104.4 73 65.8
Prupe.7G077400 Prunus persica HOM05D002612 ORTHO05D002859 7.6e-19 97.1 74 67.6
MD14G1056500 Malus domestica HOM05D002612 ORTHO05D002859 4.9e-18 94.4 74 63.5
Eucgr.K01842 Eucalyptus grandis HOM05D002612 ORTHO05D002859 6.4e-18 94.0 72 63.9
Manes.09G035700 Manihot esculenta HOM05D002612 ORTHO05D002859 1.9e-17 92.4 73 61.6
Sc13g0002290 Simmondsia chinensis HOM05D002612 ORTHO05D002859 2.1e-16 89.0 73 58.9
BcaC02g07265 Brassica carinata HOM05D002612 ORTHO05D002859 1.3e-15 86.3 73 54.8
Hma1.2p1_0676F.1_g201950 Hydrangea macrophylla HOM05D002612 ORTHO05D002859 1.7e-15 85.9 83 57.8
Lj5g0018767 Lotus japonicus HOM05D002612 ORTHO05D002859 2.3e-15 85.5 74 62.2
A04p31980 Brassica napus HOM05D002612 ORTHO05D002859 3.0e-15 85.1 73 53.4
BraA04t18656Z Brassica rapa HOM05D002612 ORTHO05D002859 3.0e-15 85.1 73 53.4
CsaV3_3G038780 Cucumis sativus L. HOM05D002612 ORTHO05D002859 3.9e-15 84.7 69 58.0
Sed0010869 Sechium edule HOM05D002612 ORTHO05D002859 3.9e-15 84.7 74 58.1
TWI74G1029 Tripterygium wilfordii HOM05D002612 ORTHO05D002859 5.1e-15 84.3 75 60.0
Rhsim03G0005800 Rhododendron simsii HOM05D002612 ORTHO05D002859 6.6e-15 84.0 72 61.1
Sp4g24300 Schrenkiella parvula HOM05D002612 ORTHO05D002859 6.6e-15 84.0 73 53.4
Atru.chr8.1116 Acer truncatum HOM05D002612 ORTHO05D002859 8.7e-15 83.6 76 55.3
Carub.0004s2442 Capsella rubella HOM05D002612 ORTHO05D002859 1.1e-14 83.2 73 53.4
Ca_12071_v3 Cicer arietinum L. HOM05D002612 ORTHO05D002859 1.9e-14 82.4 73 58.9
RcHm_v2.0_Chr3g0479541 Rosa chinensis HOM05D002612 ORTHO05D002859 2.5e-14 82.0 76 64.5
AL4G40440 Arabidopsis lyrata HOM05D002612 ORTHO05D002859 3.3e-14 81.6 73 53.4
FvH4_6g22210 Fragaria vesca HOM05D002612 ORTHO05D002859 4.3e-14 81.3 76 63.2
C04p69490 Brassica napus HOM05D002612 ORTHO05D002859 5.6e-14 80.9 73 52.1
BolC4t28448H Brassica oleracea HOM05D002612 ORTHO05D002859 5.6e-14 80.9 73 52.1
MSTRG.19906 Avicennia marina HOM05D002612 ORTHO05D002859 7.3e-14 80.5 79 54.4
Ciclev10012465m.g Citrus clementina HOM05D002612 ORTHO05D002859 7.3e-14 80.5 78 56.4
MD12G1056800 Malus domestica HOM05D002612 ORTHO05D002859 7.3e-14 80.5 75 60.0
Sed0006567 Sechium edule HOM05D002612 ORTHO05D002859 7.3e-14 80.5 80 53.8
THA.LOC104802604 Tarenaya hassleriana HOM05D002612 ORTHO05D002859 7.3e-14 80.5 75 53.3
BcaB06g29225 Brassica carinata HOM05D002612 ORTHO05D002859 9.6e-14 80.1 73 52.1
arahy.Tifrunner.gnm1.ann1.47DXFL Arachis hypogaea HOM05D002612 ORTHO05D002859 1.2e-13 79.7 72 56.9
arahy.Tifrunner.gnm1.ann1.J786L6 Arachis hypogaea HOM05D002612 ORTHO05D002859 1.2e-13 79.7 72 56.9
Dinv24067 Davidia involucrata HOM05D002612 ORTHO05D002859 1.2e-13 79.7 83 51.8
Gohir.A09G128100 Gossypium hirsutum HOM05D002612 ORTHO05D002859 1.6e-13 79.3 73 54.8
AT2G42080 Arabidopsis thaliana HOM05D002612 ORTHO05D002859 2.1e-13 79.0 73 50.7
FAN14G2805 Fragaria x ananassa HOM05D002612 ORTHO05D002859 2.8e-13 78.6 76 61.8
FAN14G3252 Fragaria x ananassa HOM05D002612 ORTHO05D002859 2.8e-13 78.6 76 61.8
Thhalv10017091m.g Eutrema salsugineum HOM05D002612 ORTHO05D002859 3.6e-13 78.2 73 49.3
Hund19204 Selenicereus undatus HOM05D002612 ORTHO05D002859 3.6e-13 78.2 75 50.7
A05p02720 Brassica napus HOM05D002612 ORTHO05D002859 4.7e-13 77.8 73 53.4
C04p03250 Brassica napus HOM05D002612 ORTHO05D002859 4.7e-13 77.8 73 53.4
BolC4t21963H Brassica oleracea HOM05D002612 ORTHO05D002859 4.7e-13 77.8 73 53.4
BraA05t19264Z Brassica rapa HOM05D002612 ORTHO05D002859 4.7e-13 77.8 73 53.4
Gohir.D09G124100 Gossypium hirsutum HOM05D002612 ORTHO05D002859 4.7e-13 77.8 73 53.4
Gorai.006G142900 Gossypium raimondii HOM05D002612 ORTHO05D002859 4.7e-13 77.8 73 53.4
CANSAT64G1369 Cannabis sativa HOM05D002612 ORTHO05D002859 6.2e-13 77.4 74 54.1
TPR.G32347 Trifolium pratense HOM05D002612 ORTHO05D002859 6.2e-13 77.4 73 52.1
Psat6g091240 Pisum sativum HOM05D002612 ORTHO05D002859 1.1e-12 76.6 73 53.4
CARHR137160 Cardamine hirsuta HOM05D002612 ORTHO05D002859 2.4e-12 75.5 70 52.9
Lalb_Chr18g0047881 Lupinus albus HOM05D002612 ORTHO05D002859 2.4e-12 75.5 55 63.6
BcaNung04409 Brassica carinata HOM05D002612 ORTHO05D002859 3.1e-12 75.1 73 52.1
Thecc.05G171700 Theobroma cacao HOM05D002612 ORTHO05D002859 4.0e-12 74.7 73 53.4
TAR623G0372 Trochodendron aralioides HOM05D002612 ORTHO05D002859 1.2e-11 73.2 83 49.4
GSVIVG01033493001 Vitis vinifera HOM05D002612 ORTHO05D002859 1.2e-11 73.2 77 53.2
Nitab4.5_0002488g0060 Nicotiana tabacum HOM05D002612 ORTHO05D002859 1.5e-11 72.8 84 47.6
Duzib106G0243 Durio zibethinus HOM05D002612 ORTHO05D002859 2.0e-11 72.4 73 50.7
MBI06_g15023_MAGBIO Magnolia biondii HOM05D002612 ORTHO05D002859 2.0e-11 72.4 88 50.0
HanXRQChr01g0009751 Helianthus annuus HOM05D002612 ORTHO05D002859 5.8e-11 70.9 82 50.0
Actinidia22037 Actinidia chinensis HOM05D002612 ORTHO05D002859 9.9e-11 70.1 88 47.7
Oeu033736.1 Olea europaea HOM05D002612 ORTHO05D002859 9.9e-11 70.1 77 51.9
Aa31LG1G24120 Aethionema arabicum HOM05D002612 ORTHO05D002859 1.3e-10 69.7 89 44.9
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 1.3e-10 69.7 73 50.7
Migut.J01834 Erythranthe guttata HOM05D002612 ORTHO05D002859 1.3e-10 69.7 79 50.6
Peaxi162Scf00258g00631 Petunia axillaris HOM05D002612 ORTHO05D002859 1.3e-10 69.7 81 48.1
EL10Ac3g06912 Beta vulgaris HOM05D002612 ORTHO05D002859 2.2e-10 68.9 77 48.1
Duzib128G1439 Durio zibethinus HOM05D002612 ORTHO05D002859 2.2e-10 68.9 73 47.9
Potri.016G045401 Populus trichocarpa HOM05D002612 ORTHO05D002859 2.2e-10 68.9 79 49.4
Nitab4.5_0000324g0010 Nicotiana tabacum HOM05D002612 ORTHO05D002859 3.8e-10 68.2 82 47.6
Sabra16G0049400 Salix brachista HOM05D002612 ORTHO05D002859 6.4e-10 67.4 78 48.7
Sopen03g016040 Solanum pennellii HOM05D002612 ORTHO05D002859 1.1e-09 66.6 77 41.6
SGA_v2.0_scaffold37G14819 Striga asiatica HOM05D002612 ORTHO05D002859 1.4e-09 66.2 79 48.1
Solyc03g063350.3 Solanum lycopersicum HOM05D002612 ORTHO05D002859 3.2e-09 65.1 77 40.3
SalBow6G0399 Salvia bowleyana HOM05D002612 ORTHO05D002859 4.2e-09 64.7 72 51.4
SalBow6G1620 Salvia bowleyana HOM05D002612 ORTHO05D002859 4.2e-09 64.7 72 51.4
SGA_v2.0_scaffold105G30491 Striga asiatica HOM05D002612 ORTHO05D002859 5.4e-09 64.3 65 53.8
CAN.G570.9 Capsicum annuum HOM05D002612 ORTHO05D002859 7.1e-09 63.9 79 43.0
ClCG10G017560 Citrullus lanatus HOM05D002612 ORTHO05D002859 7.1e-09 63.9 133 33.1
Glyma.02G172700 Glycine max HOM05D002612 ORTHO05D002859 1.2e-08 63.2 50 62.0
Cc06_g15900 Coffea canephora HOM05D002612 ORTHO05D002859 1.6e-08 62.8 88 42.0
AUR62015364 Chenopodium quinoa HOM05D002612 ORTHO05D002859 3.5e-08 61.6 79 41.8
Glyma.19G148000 Glycine max HOM05D002612 ORTHO05D002859 3.5e-08 61.6 74 48.6
Phvul.001G142600 Phaseolus vulgaris HOM05D002612 ORTHO05D002859 4.6e-08 61.2 74 45.9
VMungo1383G3725 Vigna mungo HOM05D002612 ORTHO05D002859 7.8e-08 60.5 56 53.6
Aqoxy2G00058 Aquilegia oxysepala HOM05D002612 ORTHO05D002859 1.3e-07 59.7 85 42.4
Phvul.007G260100 Phaseolus vulgaris HOM05D002612 ORTHO05D002859 2.3e-07 58.9 51 58.8
CDE05G2239 Ceratophyllum demersum HOM05D002612 ORTHO05D002859 3.0e-07 58.5 83 42.2
unitig_699.g19445 Utricularia gibba HOM05D002612 ORTHO05D002859 6.6e-07 57.4 69 43.5
AT3G58020 Arabidopsis thaliana HOM05D002612 ORTHO05D002859 1.5e-06 56.2 73 43.8
Carub.0005s2487 Capsella rubella HOM05D002612 ORTHO05D002859 5.6e-06 54.3 70 40.0
Glyma.16G162900 Glycine max HOM05D000066 ORTHO05D011769 7.3e-06 53.9 53 52.8


User provided reference genes

Program Settings