Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 7.4e-107 390.6 201 100.0
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 4.8e-98 361.3 189 97.9
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 2.9e-95 352.1 189 96.3
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 9.4e-78 293.9 192 80.7
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 4.8e-74 281.6 192 75.5
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 2.7e-69 265.8 193 78.2
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 4.0e-68 261.9 189 73.5
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 2.8e-66 255.8 191 72.8
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 1.1e-65 253.8 189 73.5
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 5.4e-65 251.5 194 71.6
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.2e-64 250.4 194 71.1
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.6e-64 250.0 188 71.8
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 2.7e-64 249.2 189 71.4
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 2.7e-64 249.2 193 71.0
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.7e-63 246.5 190 71.1
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 1.7e-63 246.5 190 71.1
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 2.9e-63 245.7 191 70.2
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 6.6e-63 244.6 191 69.6
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.5e-62 243.4 190 70.0
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 1.9e-62 243.0 201 65.7
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 4.2e-62 241.9 189 72.0
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 4.2e-62 241.9 189 70.9
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 5.5e-62 241.5 191 68.1
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 5.5e-62 241.5 160 78.8
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 9.5e-62 240.7 163 78.5
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 1.2e-61 240.4 163 79.1
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 1.2e-61 240.4 210 65.2
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 2.8e-61 239.2 145 82.8
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.8e-61 239.2 184 69.6
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 6.1e-61 238.0 197 67.0
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 1.8e-60 236.5 189 69.3
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 2.3e-60 236.1 189 69.8
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 3.0e-60 235.7 143 83.2
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 5.2e-60 235.0 190 67.9
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 5.2e-60 235.0 190 68.4
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 8.9e-60 234.2 190 67.4
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 1.2e-59 233.8 188 67.6
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 4.4e-59 231.9 195 66.7
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 5.7e-59 231.5 189 69.8
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 9.8e-59 230.7 188 67.6
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 6.3e-58 228.0 188 66.0
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 1.1e-57 227.3 184 64.7
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.8e-57 226.5 192 65.6
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.4e-57 226.1 192 65.1
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 3.1e-57 225.7 192 64.1
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 4.1e-57 225.3 190 64.2
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 9.2e-57 224.2 190 65.3
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 9.2e-57 224.2 190 65.3
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 1.2e-56 223.8 188 65.4
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 2.0e-56 223.0 187 64.2
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 2.0e-56 223.0 148 77.0
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.7e-56 222.6 204 63.7
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.7e-56 222.6 204 63.7
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 3.5e-56 222.2 195 64.1
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 3.5e-56 222.2 192 63.0
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 4.5e-56 221.9 174 69.0
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 5.9e-56 221.5 188 63.8
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 5.9e-56 221.5 191 62.3
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 1.0e-55 220.7 131 81.7
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 1.0e-55 220.7 186 64.0
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.0e-55 220.7 192 63.5
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 1.3e-55 220.3 190 64.2
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 1.7e-55 219.9 167 70.1
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 2.3e-55 219.5 192 64.6
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 2.3e-55 219.5 177 67.8
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 2.3e-55 219.5 134 81.3
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 2.3e-55 219.5 197 62.9
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 2.9e-55 219.2 190 61.6
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 2.9e-55 219.2 142 78.9
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 3.8e-55 218.8 133 83.5
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 3.8e-55 218.8 158 69.6
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 6.6e-55 218.0 192 63.0
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 8.6e-55 217.6 138 76.1
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 1.1e-54 217.2 156 73.1
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 1.9e-54 216.5 190 61.1
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 1.9e-54 216.5 139 79.9
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.5e-54 216.1 190 63.2
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 3.3e-54 215.7 134 79.1
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 7.3e-54 214.5 190 61.6
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 9.5e-54 214.2 189 61.4
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 1.2e-53 213.8 190 62.1
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.2e-53 213.8 156 73.1
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.2e-53 213.8 131 80.2
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.8e-53 212.6 194 62.9
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 2.8e-53 212.6 131 78.6
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 4.7e-53 211.8 190 64.2
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 6.1e-53 211.5 190 58.4
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 1.8e-52 209.9 133 77.4
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 1.8e-52 209.9 192 59.9
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 2.3e-52 209.5 189 60.8
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 2.3e-52 209.5 165 67.3
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 4.0e-52 208.8 166 66.3
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 6.8e-52 208.0 185 60.0
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 1.2e-51 207.2 183 61.2
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 2.0e-51 206.5 139 74.1
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 3.4e-51 205.7 184 61.4
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 3.4e-51 205.7 153 66.7
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 4.4e-51 205.3 160 65.6
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 1.7e-50 203.4 184 59.8
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 2.2e-50 203.0 184 60.3
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 3.7e-50 202.2 184 58.2
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 3.7e-50 202.2 184 58.2
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.1e-49 200.7 198 60.6
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.4e-49 200.3 133 72.2
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 2.4e-49 199.5 187 58.8
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.2e-49 199.1 189 57.7
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.0e-48 196.4 187 57.2
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 2.7e-48 196.1 189 61.9
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 6.0e-48 194.9 187 57.2
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 1.7e-47 193.4 115 79.1
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 3.0e-47 192.6 195 57.9
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 3.9e-47 192.2 189 56.6
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 5.0e-47 191.8 115 80.9
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 6.6e-47 191.4 187 55.1
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.9e-46 189.9 115 79.1
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 9.5e-46 187.6 105 84.8
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.2e-45 187.2 208 52.9
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 6.2e-45 184.9 137 67.9
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 8.0e-45 184.5 190 51.6
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 6.8e-44 181.4 193 54.4
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 8.9e-44 181.0 132 71.2
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 8.9e-44 181.0 187 53.5
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.5e-43 180.3 203 57.1
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.6e-43 179.5 214 54.2
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 4.4e-43 178.7 187 52.9
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 7.5e-43 177.9 211 54.5
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 2.4e-41 172.9 288 41.3
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 1.3e-39 167.2 148 60.1
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.3e-39 167.2 114 68.4
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.3e-39 166.4 169 54.4
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 8.6e-39 164.5 154 54.5
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 3.6e-37 159.1 128 64.8
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.4e-36 157.1 191 49.7
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 4.6e-32 142.1 103 69.9
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.7e-31 140.2 93 71.0
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 9.5e-30 134.4 139 51.1
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 9.5e-30 134.4 128 52.3
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 4.9e-26 122.1 182 41.2
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 8.4e-26 121.3 125 48.0
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 5.4e-25 118.6 139 48.2
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 7.8e-24 114.8 108 62.0
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 6.6e-23 111.7 134 44.8
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 2.4e-17 93.2 58 70.7
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.1e-16 90.1 61 75.4
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 7.3e-14 81.6 102 48.0
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 9.0e-12 74.7 52 69.2
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 1.3e-10 70.9 71 43.7
Lj2P366T41 Lonicera japonica HOM05D004474 ORTHO05D005538 4.6e-08 62.4 89 49.4
HPP92_002996 Vanilla planifolia HOM05D004474 ORTHO05D432408 4.3e-06 55.8 62 56.5


User provided reference genes

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