Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 8.0e-169 597.0 309 100.0
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 2.5e-162 575.5 309 97.1
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.4e-133 479.9 313 80.5
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 8.6e-131 470.7 313 77.6
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 1.2e-124 450.3 312 79.5
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 3.6e-121 438.7 310 74.8
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 2.9e-118 429.1 310 73.5
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 9.3e-117 424.1 313 72.5
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 9.3e-117 424.1 311 73.6
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 9.3e-117 424.1 311 73.6
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.1e-116 422.9 311 73.3
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 3.5e-116 422.2 311 72.3
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 7.9e-116 421.0 310 72.6
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.0e-115 419.1 315 71.7
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 5.1e-115 418.3 309 72.5
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 1.5e-114 416.8 281 77.2
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 1.9e-114 416.4 312 70.5
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 4.8e-113 411.8 312 70.8
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 9.0e-112 407.5 281 76.2
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 1.5e-111 406.8 331 68.0
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 4.5e-111 405.2 311 71.4
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 7.6e-111 404.4 316 70.3
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 9.9e-111 404.1 307 69.4
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 9.9e-111 404.1 266 77.4
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 1.3e-110 403.7 310 70.6
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 1.7e-110 403.3 318 68.9
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 2.2e-110 402.9 311 69.8
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 3.8e-110 402.1 284 76.4
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 4.9e-110 401.7 310 69.4
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 4.9e-110 401.7 315 69.2
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 2.4e-109 399.4 309 69.3
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 2.4e-109 399.4 291 74.2
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 4.2e-109 398.7 309 69.3
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 5.4e-109 398.3 312 68.9
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 3.5e-108 395.6 311 70.4
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 3.5e-108 395.6 289 71.3
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 7.9e-108 394.4 319 69.3
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 1.0e-107 394.0 284 74.3
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 3.9e-107 392.1 307 66.8
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 5.1e-107 391.7 295 70.5
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 8.7e-107 391.0 270 74.8
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 1.1e-106 390.6 285 71.6
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 1.3e-105 387.1 293 70.0
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.3e-105 387.1 298 68.1
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 3.7e-105 385.6 313 67.4
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 4.8e-105 385.2 308 65.6
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 8.1e-105 384.4 302 65.9
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.4e-104 383.6 312 65.7
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 1.4e-104 383.6 260 75.8
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 1.4e-104 383.6 304 67.4
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.4e-104 382.9 312 65.7
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 2.4e-104 382.9 246 78.5
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.4e-104 382.9 312 64.7
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 4.0e-104 382.1 260 75.4
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 5.3e-104 381.7 303 66.7
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 5.3e-104 381.7 303 66.7
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 5.3e-104 381.7 324 65.1
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 5.3e-104 381.7 324 65.1
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 6.9e-104 381.3 300 66.3
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 9.0e-104 380.9 303 67.3
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 1.2e-103 380.6 245 75.9
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 1.5e-103 380.2 311 64.3
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 2.6e-103 379.4 305 65.9
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 4.5e-103 378.6 303 68.0
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 7.6e-103 377.9 311 64.3
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.0e-102 377.5 258 73.6
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.0e-102 377.5 311 65.0
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 1.0e-102 377.5 266 73.3
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.0e-102 377.5 252 75.8
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 1.3e-102 377.1 307 64.5
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 2.9e-102 375.9 318 65.7
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 6.5e-102 374.8 309 63.4
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 6.5e-102 374.8 307 65.5
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.1e-101 374.0 314 62.7
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.1e-101 374.0 252 74.2
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 1.1e-101 374.0 315 63.8
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 2.5e-101 372.9 313 64.5
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 3.2e-101 372.5 314 64.0
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 4.2e-101 372.1 320 63.4
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 5.5e-101 371.7 254 73.6
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 9.3e-101 370.9 315 63.2
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 2.7e-100 369.4 236 77.5
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 4.6e-100 368.6 310 63.5
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 6.0e-100 368.2 304 64.1
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 7.9e-100 367.9 292 64.7
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 2.3e-99 366.3 307 63.2
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 3.9e-99 365.5 305 62.3
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 3.9e-99 365.5 305 62.3
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 5.1e-99 365.2 304 64.1
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 5.1e-99 365.2 292 63.7
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 8.7e-99 364.4 307 64.5
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.9e-98 363.2 307 63.5
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 2.5e-98 362.8 305 63.0
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.5e-98 362.8 307 64.2
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 7.4e-98 361.3 363 54.8
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 9.6e-98 360.9 189 97.9
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 1.3e-97 360.5 284 69.4
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.6e-97 360.1 256 71.5
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 3.7e-97 359.0 311 61.7
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.1e-96 357.5 310 63.9
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 2.4e-96 356.3 310 61.3
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 2.4e-96 356.3 236 74.6
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.4e-95 352.4 293 67.9
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 3.4e-95 352.4 274 65.3
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 7.6e-95 351.3 236 73.7
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 1.3e-94 350.5 255 68.2
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 1.3e-94 350.5 315 61.9
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 3.8e-94 349.0 409 51.8
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 6.5e-94 348.2 259 68.7
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 8.4e-94 347.8 308 61.4
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.4e-93 347.1 270 69.6
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 3.5e-92 342.4 258 69.0
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 2.3e-91 339.7 226 77.4
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.3e-91 339.7 316 57.9
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 3.7e-89 332.4 229 73.4
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 6.3e-89 331.6 293 62.5
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 1.1e-88 330.9 309 58.9
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 1.4e-88 330.5 252 68.7
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 2.4e-88 329.7 332 54.8
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 6.9e-88 328.2 350 56.9
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 6.9e-88 328.2 309 58.3
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.2e-87 327.4 355 56.1
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 1.4e-85 320.5 239 67.8
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 9.4e-85 317.8 279 60.2
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 7.9e-84 314.7 240 66.2
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 1.0e-83 314.3 270 61.9
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 5.1e-83 312.0 401 46.9
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.1e-82 310.8 318 56.6
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 1.7e-81 307.0 309 53.1
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 4.1e-80 302.4 276 56.2
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.9e-77 293.5 227 67.0
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 4.2e-77 292.4 269 62.8
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 5.5e-69 265.4 222 60.4
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 3.1e-64 249.6 172 68.6
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 2.2e-62 243.4 248 48.0
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 6.5e-62 241.9 258 50.4
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 7.2e-61 238.4 404 39.1
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 2.1e-60 236.9 299 44.1
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 2.7e-60 236.5 223 60.5
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 3.2e-53 213.0 135 77.0
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 7.2e-53 211.8 235 44.7
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 1.6e-52 210.7 250 45.6
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.6e-52 210.7 315 43.8
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 2.0e-50 203.8 143 70.6
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 3.0e-43 179.9 172 50.0
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 9.2e-40 168.3 125 66.4
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 4.3e-29 132.9 118 55.1
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 2.4e-24 117.1 108 63.0
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 1.0e-22 111.7 93 52.7
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.1e-19 101.7 75 64.0
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 1.7e-14 84.3 69 60.9
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 3.9e-14 83.2 195 34.9
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 6.6e-14 82.4 73 57.5
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 4.3e-13 79.7 70 45.7
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 1.4e-11 74.7 52 69.2
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 9.9e-10 68.6 50 72.0
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 9.3e-08 62.0 103 38.8
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 2.7e-07 60.5 147 33.3
Lj2P366T41 Lonicera japonica HOM05D004474 ORTHO05D005538 2.7e-07 60.5 89 48.3


User provided reference genes

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