Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 7.7e-74 280.4 144 100.0
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.5e-53 213.0 131 87.0
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 2.8e-47 192.2 125 78.4
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.5e-40 169.9 122 74.6
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.3e-40 168.7 126 68.3
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.3e-40 168.7 126 68.3
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.1e-39 166.0 123 69.1
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 2.1e-39 166.0 133 67.7
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 6.2e-39 164.5 132 67.4
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.4e-38 163.3 132 67.4
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 5.2e-38 161.4 125 63.2
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 2.0e-37 159.5 120 67.5
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 9.9e-37 157.1 125 67.2
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 8.3e-36 154.1 131 60.3
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.2e-35 152.1 122 67.2
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.2e-35 152.1 122 67.2
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.1e-35 151.8 122 67.2
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 5.4e-35 151.4 137 58.4
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.2e-34 150.2 119 67.2
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.1e-34 149.4 119 67.2
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.1e-34 149.4 119 67.2
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 2.1e-34 149.4 136 62.5
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 7.8e-34 147.5 137 58.4
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 7.8e-34 147.5 139 61.2
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.0e-33 147.1 137 59.9
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.7e-33 146.4 124 64.5
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.7e-33 146.4 124 64.5
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.7e-33 146.4 124 64.5
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.3e-33 146.0 122 62.3
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.1e-33 144.8 125 65.6
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 6.6e-33 144.4 116 64.7
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 6.6e-33 144.4 119 59.7
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.6e-33 144.1 124 64.5
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.1e-32 143.7 123 61.0
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.1e-32 143.7 130 56.9
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.5e-32 143.3 124 62.9
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 2.5e-32 142.5 118 62.7
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 4.3e-32 141.7 115 65.2
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 5.6e-32 141.4 130 57.7
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 7.3e-32 141.0 122 61.5
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 7.3e-32 141.0 131 55.7
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 9.5e-32 140.6 137 59.9
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 9.5e-32 140.6 126 61.1
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 1.6e-31 139.8 120 60.8
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 2.1e-31 139.4 115 63.5
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 2.1e-31 139.4 115 63.5
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 6.2e-31 137.9 139 56.8
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 6.2e-31 137.9 118 60.2
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 8.1e-31 137.5 133 58.6
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.4e-30 136.7 123 59.3
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 1.4e-30 136.7 119 58.8
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 2.4e-30 136.0 121 57.0
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 4.0e-30 135.2 122 59.8
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 6.8e-30 134.4 133 54.9
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.2e-29 133.7 120 59.2
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.2e-29 133.7 135 54.1
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 1.5e-29 133.3 124 58.1
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.5e-29 133.3 124 58.1
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.0e-29 132.9 120 59.2
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 2.6e-29 132.5 124 56.5
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 3.4e-29 132.1 118 60.2
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 4.4e-29 131.7 131 54.2
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 5.8e-29 131.3 156 54.5
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 5.8e-29 131.3 119 58.8
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 5.8e-29 131.3 120 59.2
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 7.6e-29 131.0 119 56.3
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 9.9e-29 130.6 115 60.0
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.3e-28 130.2 127 55.1
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.7e-28 129.8 116 59.5
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 4.9e-28 128.3 152 50.0
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 1.1e-27 127.1 112 58.9
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.9e-27 126.3 158 46.8
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.1e-27 125.2 159 47.2
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 5.4e-27 124.8 152 48.0
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.6e-26 123.2 115 58.3
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 2.7e-26 122.5 130 53.8
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 2.7e-26 122.5 130 53.8
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 2.7e-26 122.5 94 67.0
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 3.5e-26 122.1 151 47.7
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.0e-25 120.6 119 54.6
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.0e-25 120.6 118 56.8
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.0e-25 120.6 128 57.0
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 1.0e-25 120.6 123 51.2
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.3e-25 120.2 121 53.7
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.7e-25 119.8 133 53.4
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.0e-25 119.0 137 48.9
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 3.0e-25 119.0 118 59.3
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 3.0e-25 119.0 130 53.8
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.9e-25 118.6 125 56.0
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 3.9e-25 118.6 127 55.9
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 5.1e-25 118.2 127 55.9
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 6.6e-25 117.9 116 53.4
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 8.7e-25 117.5 128 50.8
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.9e-24 116.3 129 51.2
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.3e-24 115.5 128 51.6
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 4.3e-24 115.2 139 48.9
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 5.6e-24 114.8 128 50.8
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 9.6e-24 114.0 131 50.4
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.8e-23 112.5 116 50.9
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.6e-23 112.1 122 53.3
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 6.2e-23 111.3 126 53.2
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 8.1e-23 110.9 130 48.5
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.1e-22 110.5 128 51.6
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.4e-22 110.2 123 51.2
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 3.1e-22 109.0 136 52.9
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 4.0e-22 108.6 135 52.6
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 4.0e-22 108.6 135 52.6
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 4.0e-22 108.6 133 51.1
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 5.2e-22 108.2 136 52.2
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 5.2e-22 108.2 151 47.7
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 6.9e-22 107.8 124 51.6
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 6.9e-22 107.8 128 50.8
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 6.9e-22 107.8 117 55.6
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 9.0e-22 107.5 124 51.6
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 9.0e-22 107.5 136 50.0
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-21 107.1 123 49.6
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.2e-21 107.1 115 53.9
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.2e-21 107.1 137 49.6
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 2.0e-21 106.3 123 49.6
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.6e-21 105.9 125 51.2
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 4.4e-21 105.1 128 49.2
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 4.4e-21 105.1 120 54.2
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 4.4e-21 105.1 125 50.4
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.8e-21 104.8 121 49.6
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 5.8e-21 104.8 135 50.4
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 7.6e-21 104.4 125 48.8
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 9.9e-21 104.0 130 48.5
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 1.3e-20 103.6 133 48.9
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 1.3e-20 103.6 137 47.4
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 2.2e-20 102.8 124 49.2
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 2.2e-20 102.8 123 50.4
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 2.9e-20 102.4 123 49.6
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.9e-20 102.4 124 50.0
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 3.8e-20 102.1 124 48.4
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 4.9e-20 101.7 139 43.9
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 8.4e-20 100.9 122 47.5
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.1e-19 100.5 145 44.1
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.1e-19 100.5 143 44.1
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.4e-19 100.1 142 45.1
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.4e-19 100.1 118 51.7
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.4e-19 100.1 118 51.7
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 2.4e-19 99.4 146 43.2
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 4.2e-19 98.6 124 48.4
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 7.1e-19 97.8 132 46.2
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 9.3e-19 97.4 141 44.7
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-18 97.1 124 47.6
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.2e-18 97.1 123 48.8
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 1.6e-18 96.7 125 46.4
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 2.1e-18 96.3 115 48.7
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.7e-18 95.9 128 47.7
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 3.5e-18 95.5 133 46.6
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 4.6e-18 95.1 122 51.6
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 6.0e-18 94.7 128 45.3
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 6.0e-18 94.7 126 46.8
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 1.0e-17 94.0 135 44.4
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.0e-17 94.0 120 52.5
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.7e-17 93.2 127 43.3
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.3e-17 92.8 112 48.2
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 3.0e-17 92.4 115 48.7
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.9e-17 92.0 116 50.9
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 5.1e-17 91.7 135 42.2
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 6.6e-17 91.3 117 47.9
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 1.6e-15 86.7 132 43.2
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.1e-15 86.3 125 44.8
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 4.8e-15 85.1 127 44.9
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.1e-14 84.0 101 45.5
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 2.0e-13 79.7 101 43.6
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 3.8e-12 75.5 120 45.8
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.1e-11 73.9 69 59.4
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.6e-10 70.1 133 38.3
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.1e-10 69.7 110 38.2
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 3.9e-09 65.5 122 40.2
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 5.1e-09 65.1 75 52.0
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.5e-08 63.5 68 52.9
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.9e-08 63.2 61 55.7
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.5e-08 62.8 72 51.4
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 5.6e-08 61.6 67 52.2
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 5.6e-08 61.6 67 52.2
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 7.4e-08 61.2 67 52.2
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 1.3e-07 60.5 67 50.7
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 1.6e-07 60.1 67 52.2
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 4.8e-07 58.5 112 35.7
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 9.0e-06 54.3 108 37.0


User provided reference genes

Program Settings