Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 4.9e-85 317.8 161 100.0
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 9.9e-78 293.5 158 90.5
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 8.3e-77 290.4 159 89.3
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 8.3e-77 290.4 158 88.6
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 1.4e-76 289.7 158 88.6
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 7.1e-76 287.3 158 87.3
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 9.2e-76 287.0 158 87.3
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 9.2e-76 287.0 158 87.3
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 9.2e-76 287.0 158 87.3
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 9.2e-76 287.0 158 87.3
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 9.2e-76 287.0 158 87.3
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 9.2e-76 287.0 158 87.3
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 4.6e-75 284.6 158 87.3
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 9.5e-73 276.9 158 83.5
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 1.2e-72 276.6 158 84.2
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 1.2e-72 276.6 155 85.2
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 8.1e-72 273.9 156 84.6
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 3.1e-71 271.9 159 83.0
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.1e-71 271.9 159 82.4
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 3.1e-71 271.9 159 81.8
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 4.0e-71 271.6 154 85.7
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 4.0e-71 271.6 154 85.7
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 4.0e-71 271.6 156 83.3
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 4.0e-71 271.6 154 86.4
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 4.0e-71 271.6 155 82.6
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 5.2e-71 271.2 154 84.4
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 5.2e-71 271.2 156 82.7
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 6.8e-71 270.8 159 82.4
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 6.8e-71 270.8 157 81.5
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 8.9e-71 270.4 156 82.7
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 8.9e-71 270.4 156 82.7
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 2.6e-70 268.9 155 83.2
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 2.6e-70 268.9 158 81.0
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 4.4e-70 268.1 157 81.5
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 4.4e-70 268.1 158 80.4
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 5.8e-70 267.7 158 81.0
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 5.8e-70 267.7 154 83.8
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 9.9e-70 266.9 158 81.0
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 9.9e-70 266.9 156 82.1
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 1.3e-69 266.5 156 81.4
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 1.3e-69 266.5 158 79.1
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.7e-69 266.2 158 79.7
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 2.2e-69 265.8 158 79.1
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 3.8e-69 265.0 154 82.5
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 4.9e-69 264.6 156 80.8
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 6.4e-69 264.2 155 81.3
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 1.4e-68 263.1 155 81.3
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 7.1e-68 260.8 157 79.0
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 9.2e-68 260.4 137 95.6
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.1e-67 259.2 158 77.8
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 2.7e-67 258.8 154 79.9
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 3.5e-67 258.5 161 80.1
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 3.5e-67 258.5 155 80.6
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 3.5e-67 258.5 158 79.1
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 4.6e-67 258.1 158 77.2
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 4.6e-67 258.1 156 77.6
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 4.6e-67 258.1 159 78.6
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 1.0e-66 256.9 156 80.8
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 1.0e-66 256.9 158 77.2
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.0e-66 256.9 154 79.2
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 1.3e-66 256.5 158 79.1
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.3e-66 256.5 158 75.9
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.7e-66 256.1 158 75.9
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.7e-66 256.1 158 75.9
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.7e-66 256.1 159 77.4
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 3.0e-66 255.4 159 78.6
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 3.9e-66 255.0 156 76.9
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.9e-66 255.0 159 76.7
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 6.6e-66 254.2 158 75.9
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 6.6e-66 254.2 154 77.9
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 8.6e-66 253.8 158 79.1
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 8.6e-66 253.8 158 79.1
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 75.3
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 77.2
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 77.2
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 1.5e-65 253.1 158 77.2
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.5e-65 253.1 158 78.5
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 1.9e-65 252.7 156 78.8
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 3.3e-65 251.9 160 78.1
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 3.3e-65 251.9 160 78.1
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 5.6e-65 251.1 158 75.3
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 7.3e-65 250.8 158 77.2
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 1.6e-64 249.6 159 74.8
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 1.6e-64 249.6 159 74.8
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 1.6e-64 249.6 159 74.8
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 1.6e-64 249.6 159 74.8
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.6e-64 249.6 159 74.8
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.6e-64 249.6 158 74.7
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.6e-64 249.6 140 85.7
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 1.6e-64 249.6 158 77.8
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 2.1e-64 249.2 156 75.0
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 8.1e-64 247.3 156 74.4
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 8.1e-64 247.3 154 78.6
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 1.1e-63 246.9 156 74.4
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 1.1e-63 246.9 156 74.4
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 1.1e-63 246.9 156 74.4
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 1.8e-63 246.1 156 73.7
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 3.1e-63 245.4 159 74.2
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 4.0e-63 245.0 154 76.6
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 4.0e-63 245.0 154 76.6
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 4.0e-63 245.0 158 75.9
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 6.9e-63 244.2 158 74.1
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 1.5e-62 243.0 157 72.6
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 1.5e-62 243.0 159 71.7
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 2.0e-62 242.7 159 71.7
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 1.3e-61 240.0 152 76.3
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 1.3e-61 240.0 158 72.2
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 2.2e-61 239.2 153 71.2
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 1.4e-60 236.5 245 54.3
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 3.2e-60 235.3 207 58.5
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 6.0e-59 231.1 154 68.8
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 6.0e-59 231.1 143 77.6
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 5.1e-58 228.0 156 69.9
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 6.6e-58 227.6 141 77.3
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 1.6e-56 223.0 154 70.1
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 2.1e-56 222.6 146 71.9
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 2.0e-54 216.1 123 84.6
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 2.0e-54 216.1 146 69.2
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.4e-54 215.3 159 67.3
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 1.4e-52 209.9 125 78.4
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 4.6e-51 204.9 160 61.9
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 5.1e-50 201.4 208 52.4
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 1.6e-48 196.4 112 83.0
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 3.7e-48 195.3 302 41.7
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 3.7e-48 195.3 118 78.8
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 1.1e-47 193.7 158 58.9
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 5.8e-46 188.0 187 54.0
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 2.5e-41 172.6 99 89.9
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 5.6e-41 171.4 141 61.7
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 1.5e-38 163.3 111 73.0
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 2.7e-35 152.5 99 73.7
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 3.5e-35 152.1 133 57.1
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 3.7e-32 142.1 154 45.5
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.5e-30 136.7 149 47.7
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 5.9e-30 134.8 149 46.3
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.4e-28 130.2 123 54.5
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 3.2e-28 129.0 77 76.6
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 7.2e-28 127.9 146 52.7
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 2.1e-27 126.3 146 44.5
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 6.7e-26 121.3 145 44.8
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 3.3e-25 119.0 132 45.5
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.8e-24 115.2 96 62.5
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.8e-24 115.2 96 62.5
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.4e-23 113.6 95 60.0
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 1.8e-23 113.2 65 80.0
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 6.9e-23 111.3 85 63.5
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 3.4e-22 109.0 64 79.7
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 7.7e-22 107.8 133 41.4
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.0e-21 105.1 64 76.6
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 1.4e-20 103.6 101 58.4
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 4.7e-19 98.6 78 64.1
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 2.3e-10 69.7 69 55.1
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 3.0e-10 69.3 146 34.9
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 6.7e-10 68.2 69 53.6
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 4.8e-08 62.0 47 68.1
Nn1g07333 Nelumbo nucifera HOM05D026918 ORTHO05D005698 5.9e-06 55.1 32 68.8


User provided reference genes

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