Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 3.6e-138 495.0 259 100.0
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 3.0e-129 465.3 259 95.4
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 4.1e-102 375.2 259 78.4
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 7.1e-102 374.4 278 74.1
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 7.6e-88 327.8 259 68.3
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 1.3e-82 310.5 280 64.6
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 1.3e-82 310.5 261 67.0
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.5e-70 269.6 259 62.5
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.4e-65 253.8 264 58.0
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 3.5e-61 239.2 264 55.3
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.5e-61 239.2 273 56.4
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 2.2e-58 229.9 262 53.4
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 3.7e-58 229.2 264 57.6
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 3.7e-58 229.2 262 56.5
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 6.3e-58 228.4 265 53.2
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 5.3e-57 225.3 269 53.9
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 7.7e-56 221.5 265 54.0
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 7.7e-56 221.5 295 52.5
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 1.3e-55 220.7 282 50.7
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 1.7e-55 220.3 269 52.0
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 6.5e-55 218.4 263 55.1
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 1.4e-54 217.2 263 54.8
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 1.4e-54 217.2 263 55.1
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.4e-54 217.2 273 50.5
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.9e-54 216.9 269 53.5
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.9e-54 216.9 282 53.2
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 1.2e-53 214.2 266 51.1
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 1.6e-53 213.8 263 52.1
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 1.6e-53 213.8 263 53.2
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 2.7e-53 213.0 264 54.5
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 3.6e-53 212.6 261 54.0
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 3.6e-53 212.6 266 52.3
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 3.6e-53 212.6 263 51.7
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.0e-52 209.5 264 51.5
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 6.7e-52 208.4 266 50.4
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 8.8e-52 208.0 263 51.0
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 8.8e-52 208.0 266 53.8
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 1.5e-51 207.2 271 52.0
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 2.0e-51 206.8 262 48.9
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 4.3e-51 205.7 264 53.8
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 5.7e-51 205.3 261 51.0
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.3e-50 204.1 274 50.0
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 1.3e-50 204.1 245 56.7
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.7e-50 203.8 263 50.6
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 2.8e-50 203.0 257 51.8
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 4.8e-50 202.2 269 50.6
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 6.3e-50 201.8 264 52.3
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 6.3e-50 201.8 264 51.9
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 8.2e-50 201.4 267 50.9
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.1e-49 201.1 264 53.4
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.4e-49 199.9 176 64.2
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 6.9e-49 198.4 263 49.0
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 1.2e-48 197.6 260 51.9
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.5e-48 197.2 264 52.7
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 2.0e-48 196.8 270 51.5
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 3.4e-48 196.1 278 50.7
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 7.7e-48 194.9 266 51.5
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.7e-47 193.7 263 50.6
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 2.2e-47 193.4 270 50.7
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 2.9e-47 193.0 262 48.5
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 8.5e-47 191.4 222 55.0
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 8.5e-47 191.4 266 50.4
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 1.4e-46 190.7 262 48.1
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 3.2e-46 189.5 263 49.8
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 5.5e-46 188.7 263 49.8
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 5.5e-46 188.7 264 49.6
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 7.2e-46 188.3 262 49.2
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 9.4e-46 188.0 312 45.5
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 2.1e-45 186.8 261 50.6
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.1e-45 186.8 267 48.3
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 6.1e-45 185.3 264 47.3
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.4e-44 184.1 263 49.4
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.0e-44 183.0 250 51.2
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 3.9e-44 182.6 270 48.1
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 3.9e-44 182.6 279 48.7
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 2.0e-43 180.3 273 47.3
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 2.0e-43 180.3 265 48.3
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 2.6e-43 179.9 271 46.9
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.3e-43 179.5 241 51.5
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.3e-43 179.5 263 48.3
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 1.3e-42 177.6 315 42.2
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 1.3e-42 177.6 267 45.3
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 1.7e-42 177.2 229 51.1
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 1.7e-42 177.2 309 42.1
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.8e-41 173.7 276 46.0
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 7.0e-41 171.8 268 46.6
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 9.1e-41 171.4 254 49.6
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 2.0e-40 170.2 268 47.8
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.5e-40 169.5 258 46.9
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.5e-40 169.5 258 46.9
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 4.5e-40 169.1 268 45.9
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.3e-39 167.5 260 47.3
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 2.9e-39 166.4 258 46.9
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 6.5e-39 165.2 270 44.4
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-38 164.5 258 46.5
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-38 164.5 258 46.5
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 1.9e-38 163.7 206 46.1
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 3.2e-38 162.9 266 45.1
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 3.2e-38 162.9 266 44.0
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 5.5e-38 162.2 267 43.1
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 5.5e-38 162.2 266 47.0
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.2e-38 161.8 261 47.5
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.2e-38 161.8 254 46.1
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 9.4e-38 161.4 268 43.3
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 1.2e-37 161.0 267 43.4
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.2e-37 161.0 261 47.5
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.2e-37 161.0 260 48.1
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 2.1e-37 160.2 271 43.2
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 2.1e-37 160.2 266 44.4
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 2.7e-37 159.8 264 46.2
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 2.7e-37 159.8 264 46.2
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 8.0e-37 158.3 264 44.3
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 8.0e-37 158.3 264 44.3
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 8.0e-37 158.3 259 45.9
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.0e-36 157.9 261 47.1
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 1.4e-36 157.5 263 43.3
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 1.4e-36 157.5 261 47.1
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-36 157.5 261 46.7
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 1.4e-36 157.5 264 45.8
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 1.4e-36 157.5 260 47.3
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 2.3e-36 156.8 265 44.5
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 3.9e-36 156.0 264 43.2
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 5.2e-36 155.6 260 46.2
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.2e-36 155.6 260 46.2
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 5.2e-36 155.6 262 45.8
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 8.8e-36 154.8 266 44.4
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 2.0e-35 153.7 265 44.5
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 4.4e-35 152.5 273 43.6
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 7.4e-35 151.8 265 42.6
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 9.7e-35 151.4 264 44.3
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 4.8e-34 149.1 196 52.0
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 2.4e-33 146.7 261 42.1
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 9.1e-33 144.8 263 42.6
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 2.0e-32 143.7 259 42.9
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 4.5e-32 142.5 261 41.4
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.5e-32 142.5 266 41.7
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 2.9e-31 139.8 268 44.4
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.5e-30 137.5 273 41.8
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 2.5e-30 136.7 266 44.0
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 7.2e-30 135.2 195 49.2
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 9.4e-30 134.8 154 53.9
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 2.3e-28 130.2 263 39.9
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 8.8e-28 128.3 295 36.9
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 8.8e-28 128.3 260 38.5
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 2.6e-27 126.7 265 38.5
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 7.5e-27 125.2 294 37.1
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 9.7e-27 124.8 135 50.4
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 1.1e-25 121.3 266 38.7
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 2.4e-25 120.2 237 43.5
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 4.1e-25 119.4 261 38.7
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 4.1e-25 119.4 260 37.7
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 7.0e-25 118.6 268 37.7
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.7e-24 116.7 117 57.3
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 2.2e-23 113.6 272 39.0
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 2.5e-22 110.2 261 36.4
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 4.2e-22 109.4 262 35.1
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 7.2e-22 108.6 367 30.8
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 8.0e-21 105.1 261 35.6
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.4e-20 104.4 254 34.3
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.3e-20 103.6 262 33.6
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 4.0e-20 102.8 259 34.7
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 8.3e-18 95.1 125 52.8
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 9.1e-17 91.7 261 34.5
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 3.5e-16 89.7 259 32.4
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 3.5e-16 89.7 261 32.6
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.3e-15 87.8 254 36.6
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 3.8e-15 86.3 251 33.9
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 2.8e-13 80.1 260 31.5
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 1.8e-12 77.4 70 61.4
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 1.2e-11 74.7 70 62.9
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 1.2e-11 74.7 213 32.9
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 1.2e-11 74.7 112 40.2
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.4e-09 67.8 86 52.3
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.8e-09 67.4 87 51.7
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 5.4e-09 65.9 135 39.3
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 7.0e-09 65.5 67 55.2
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 3.5e-08 63.2 165 33.9
CSS0008617 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.9e-08 62.4 89 49.4
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 7.8e-08 62.0 205 34.1
Medtr7g007430 Medicago truncatula HOM05D000048 ORTHO05D003885 1.7e-07 60.8 107 43.0
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 5.0e-07 59.3 101 44.6
ECA234G0160 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.1e-06 58.2 57 63.2
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 1.5e-06 57.8 228 33.3
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 3.3e-06 56.6 229 27.9


User provided reference genes

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