Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 9.9e-124 446.8 229 100.0
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 9.3e-106 387.1 244 84.0
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.1e-69 267.3 247 62.3
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 1.7e-62 243.4 246 60.6
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 2.3e-48 196.4 238 51.7
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 2.0e-47 193.4 236 46.6
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 2.0e-47 193.4 231 51.1
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 8.3e-46 188.0 245 49.4
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 2.4e-45 186.4 230 50.4
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 3.5e-44 182.6 249 50.6
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.3e-43 179.9 246 45.5
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 6.6e-43 178.3 250 46.8
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.5e-42 177.2 249 47.8
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 5.6e-42 175.3 232 47.4
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.6e-41 173.7 217 47.5
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.0e-40 171.0 240 45.4
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 4.0e-40 169.1 245 46.1
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.2e-39 167.5 243 46.1
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 1.2e-39 167.5 214 50.5
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.5e-39 167.2 255 44.3
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 2.0e-39 166.8 252 40.1
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 2.6e-39 166.4 253 44.3
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.2e-38 163.3 252 42.9
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 2.9e-38 162.9 251 43.4
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 3.7e-38 162.5 237 45.6
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 6.4e-38 161.8 252 39.3
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 1.1e-37 161.0 214 44.9
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.9e-37 160.2 235 41.7
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 3.2e-37 159.5 246 41.5
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 7.0e-37 158.3 249 41.0
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.2e-36 157.5 252 44.8
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.0e-36 156.8 237 43.0
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 3.5e-36 156.0 236 42.8
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 6.0e-36 155.2 246 42.7
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 7.8e-36 154.8 249 40.6
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 7.8e-36 154.8 249 40.6
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.7e-35 153.7 246 44.7
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 3.9e-35 152.5 247 40.9
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 3.9e-35 152.5 247 41.7
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 1.9e-34 150.2 219 43.8
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.9e-34 150.2 251 39.0
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 1.9e-34 150.2 241 43.2
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 1.9e-34 150.2 245 40.8
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 2.5e-34 149.8 254 39.8
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 2.5e-34 149.8 240 39.6
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 3.3e-34 149.4 214 41.6
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 5.6e-34 148.7 238 42.4
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.6e-34 148.7 215 40.5
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 7.3e-34 148.3 238 42.4
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 9.5e-34 147.9 238 42.9
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.2e-33 147.5 242 38.8
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 1.6e-33 147.1 257 42.8
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 2.1e-33 146.7 249 42.2
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 4.7e-33 145.6 223 40.4
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 6.2e-33 145.2 252 42.1
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 6.2e-33 145.2 247 42.9
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.1e-32 144.4 242 39.7
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 1.1e-32 144.4 243 40.3
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 1.8e-32 143.7 242 41.3
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.8e-32 143.7 244 41.8
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 2.3e-32 143.3 239 41.4
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 3.1e-32 142.9 245 41.2
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 3.1e-32 142.9 259 41.7
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.0e-32 142.5 250 41.2
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 4.0e-32 142.5 221 42.1
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 5.2e-32 142.1 235 40.0
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 6.8e-32 141.7 253 41.1
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 6.8e-32 141.7 260 42.3
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.2e-31 141.0 249 43.4
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 1.5e-31 140.6 243 39.5
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.5e-31 140.6 234 39.7
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.5e-31 140.6 258 41.1
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.5e-31 140.6 245 40.0
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.0e-31 140.2 253 40.7
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.4e-31 139.4 232 39.7
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 5.8e-31 138.7 253 36.4
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 7.5e-31 138.3 221 41.6
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 7.5e-31 138.3 242 40.9
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 7.5e-31 138.3 244 40.2
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 9.8e-31 137.9 242 37.6
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.3e-30 137.5 252 40.5
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.7e-30 137.1 245 38.0
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 2.9e-30 136.3 236 37.7
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 2.9e-30 136.3 249 40.2
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 2.9e-30 136.3 239 37.2
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 2.9e-30 136.3 239 37.2
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.9e-30 136.3 250 38.8
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.9e-30 136.3 238 38.2
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 3.7e-30 136.0 237 38.0
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 3.7e-30 136.0 234 39.3
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 4.9e-30 135.6 213 42.7
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 4.9e-30 135.6 221 39.4
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 6.4e-30 135.2 239 38.1
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 6.4e-30 135.2 260 35.8
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.1e-29 134.4 274 39.4
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 1.4e-29 134.0 213 40.4
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 1.9e-29 133.7 242 40.9
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 3.2e-29 132.9 238 37.4
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 5.4e-29 132.1 248 38.3
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 5.4e-29 132.1 232 39.2
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 7.1e-29 131.7 228 36.4
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 9.2e-29 131.3 243 40.7
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 1.2e-28 131.0 232 39.2
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 2.7e-28 129.8 245 38.0
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 2.7e-28 129.8 201 38.8
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 4.6e-28 129.0 270 34.8
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 6.0e-28 128.6 244 39.3
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 1.0e-27 127.9 229 40.6
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 1.3e-27 127.5 233 39.5
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 1.7e-27 127.1 239 38.1
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 1.7e-27 127.1 239 38.1
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.7e-27 127.1 240 39.6
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.7e-27 127.1 251 36.3
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 3.0e-27 126.3 241 35.3
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 3.0e-27 126.3 240 37.5
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 6.6e-27 125.2 243 38.7
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 6.6e-27 125.2 244 35.7
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 8.6e-27 124.8 238 39.1
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 8.6e-27 124.8 237 40.1
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.9e-26 123.6 244 35.7
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.9e-26 123.6 244 35.7
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 3.3e-26 122.9 244 38.9
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 4.3e-26 122.5 236 37.3
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 4.3e-26 122.5 236 37.3
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 5.6e-26 122.1 250 38.4
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 1.6e-25 120.6 210 37.6
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 2.1e-25 120.2 236 36.9
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 2.8e-25 119.8 276 36.2
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 2.8e-25 119.8 271 34.7
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 3.6e-25 119.4 232 38.8
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 8.1e-25 118.2 245 39.2
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.1e-24 117.9 234 36.8
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 1.1e-24 117.9 230 36.1
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.1e-24 117.9 237 37.1
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.8e-24 117.1 244 36.5
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 6.8e-24 115.2 236 36.4
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 6.8e-24 115.2 236 36.4
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 6.8e-24 115.2 230 37.0
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 8.9e-24 114.8 225 34.7
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 8.9e-24 114.8 240 35.8
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 2.0e-23 113.6 236 34.3
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 2.6e-23 113.2 234 34.6
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 3.4e-23 112.8 238 38.7
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 3.4e-23 112.8 238 38.7
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 4.4e-23 112.5 238 37.0
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 7.6e-23 111.7 237 34.6
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 1.3e-22 110.9 268 33.6
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 1.9e-21 107.1 243 34.6
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 4.1e-21 105.9 186 38.2
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 2.1e-20 103.6 222 34.2
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 4.6e-20 102.4 69 62.3
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 2.3e-19 100.1 221 34.8
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.4e-16 90.9 236 33.1
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.2e-13 79.3 102 38.2
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.9e-11 72.8 171 30.4
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 8.7e-11 71.6 140 34.3
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.9e-10 70.5 141 28.4
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 1.9e-10 70.5 141 28.4
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 7.3e-10 68.6 114 42.1
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 2.1e-09 67.0 46 56.5
FvH4_6g23250 Fragaria vesca HOM05D004075 ORTHO05D004538 5.3e-08 62.4 75 50.7


User provided reference genes

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