Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 0.0e+00 2191.4 1114 100.0
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 0.0e+00 1780.4 1024 90.7
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 0.0e+00 1579.3 1070 76.9
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 0.0e+00 1561.2 1108 74.2
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 0.0e+00 1295.0 1100 62.5
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 0.0e+00 1292.3 1102 63.9
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 0.0e+00 1275.8 1098 61.7
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 0.0e+00 1275.4 1101 62.1
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 0.0e+00 1250.3 1109 62.5
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 0.0e+00 1246.1 1104 60.4
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 0.0e+00 1230.7 1078 61.2
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1228.0 1074 61.1
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 0.0e+00 1215.7 1110 59.1
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1214.5 1079 60.2
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1213.4 1073 59.8
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 0.0e+00 1211.1 1073 59.9
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 0.0e+00 1210.7 1092 59.5
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1206.4 1077 59.5
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1200.3 1077 59.1
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 0.0e+00 1188.7 1097 59.3
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 0.0e+00 1176.8 1096 58.3
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 0.0e+00 1176.0 1096 58.1
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1171.4 1082 58.6
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 0.0e+00 1163.3 1099 58.0
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 0.0e+00 1159.4 1084 58.3
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 0.0e+00 1151.0 1101 57.8
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 0.0e+00 1133.6 1103 57.5
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 0.0e+00 1129.8 1092 57.4
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 0.0e+00 1129.8 1102 57.4
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 0.0e+00 1122.1 1108 56.8
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 0.0e+00 1121.3 1082 57.7
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 0.0e+00 1110.5 1092 55.2
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 0.0e+00 1107.4 1094 55.3
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 0.0e+00 1077.4 1093 54.2
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 5.3e-311 1071.2 1064 55.1
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 2.2e-309 1065.8 1093 54.3
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 4.1e-308 1061.6 1096 52.9
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 2.7e-307 1058.9 1099 54.2
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 4.6e-307 1058.1 1103 54.1
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 1.9e-305 1052.7 1096 52.6
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 1.2e-304 1050.0 1088 52.5
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 1.1e-297 1026.9 1089 51.6
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 2.4e-295 1019.2 1101 49.8
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 4.0e-295 1018.5 1120 51.9
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 1.2e-294 1016.9 1110 49.5
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 2.2e-293 1012.7 1091 51.2
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 2.2e-293 1012.7 1085 52.3
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 4.6e-291 1005.0 1003 55.3
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 1.7e-290 1003.0 1076 50.7
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 2.3e-290 1002.7 919 57.7
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 5.1e-290 1001.5 1093 50.0
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 4.3e-289 998.4 1089 50.7
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 1.1e-287 993.8 1127 49.9
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 2.4e-287 992.6 1042 51.6
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 3.1e-287 992.3 1092 49.8
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 1.7e-285 986.5 1115 48.9
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 1.7e-285 986.5 1115 48.9
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 2.2e-285 986.1 1080 49.7
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 2.1e-283 979.5 1068 50.7
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 3.0e-282 975.7 1104 50.3
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 7.3e-281 971.1 950 56.5
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.6e-275 953.4 862 57.7
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 3.9e-274 948.7 1097 49.7
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 9.6e-273 944.1 1120 47.1
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 8.7e-266 921.0 934 55.5
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 1.1e-263 914.1 932 55.7
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 2.9e-261 906.0 822 59.6
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 5.1e-258 895.2 766 61.4
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 1.1e-255 887.5 1093 46.4
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 2.9e-253 879.4 974 49.9
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 1.4e-250 870.5 1055 47.5
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 8.2e-248 861.3 1093 46.0
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 5.3e-247 858.6 1145 44.8
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 1.2e-246 857.4 1180 43.0
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 4.5e-246 855.5 1079 46.8
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 4.1e-239 832.4 1100 44.5
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 9.4e-236 821.2 897 50.5
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 1.7e-229 800.4 1075 44.1
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 2.0e-222 776.9 1101 42.1
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 5.0e-221 772.3 980 44.8
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 3.1e-202 709.9 703 56.5
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 3.9e-189 666.4 800 48.4
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 1.1e-188 664.8 752 46.7
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 7.3e-188 662.1 597 58.0
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 8.6e-181 638.6 878 44.2
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 1.1e-175 621.7 729 47.5
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.6e-171 607.8 1035 37.8
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 8.2e-147 525.8 1138 33.5
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 6.1e-134 483.0 455 58.2
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 3.7e-131 473.8 1315 29.2
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 7.2e-127 459.5 689 40.8
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 2.2e-123 448.0 425 57.4
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.6e-118 431.8 1171 31.6
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 4.7e-110 403.7 389 55.8
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 2.4e-98 364.8 360 54.4
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 7.2e-95 353.2 332 59.3
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 9.8e-92 342.8 331 55.6
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 1.1e-90 339.3 298 60.4
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 2.1e-86 325.1 302 59.6
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 3.6e-86 324.3 551 39.4
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 1.1e-79 302.8 368 45.9
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 3.3e-79 301.2 286 55.2
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 3.0e-72 278.1 280 53.2
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 5.4e-66 257.3 345 43.5
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 2.1e-62 245.4 218 63.8
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 5.4e-58 230.7 261 48.7
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 1.7e-56 225.7 184 59.2
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.1e-54 218.8 365 39.5
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 1.1e-53 216.5 170 63.5
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 2.9e-51 208.4 157 63.1
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 4.2e-50 204.5 194 53.1
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 5.1e-48 197.6 254 44.5
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 2.5e-47 195.3 164 57.9
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 2.1e-38 165.6 304 40.1
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 2.2e-35 155.6 128 66.4
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 4.1e-29 134.8 448 29.2
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 5.3e-29 134.4 131 56.5
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 1.0e-27 130.2 386 26.7
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 9.3e-26 123.6 115 54.8
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 9.3e-26 123.6 115 54.8
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.6e-25 122.9 115 54.8
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 1.1e-21 110.2 137 44.5
Rhsim03G0016400 Rhododendron simsii HOM05D005711 ORTHO05D007125 4.1e-21 108.2 85 62.4
Nitab4.5_0010669g0030 Nicotiana tabacum HOM05D005711 ORTHO05D007125 7.2e-18 97.4 171 38.0
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 3.7e-14 85.1 94 52.1
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 1.1e-13 83.6 362 22.1
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 6.9e-13 80.9 85 42.4
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 8.5e-11 73.9 68 50.0
CBR_g41430 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-11 73.9 198 27.8
Thecc.05G161000 Theobroma cacao HOM05D005711 ORTHO05D007125 6.7e-08 64.3 44 68.2
FAN04G1389 Fragaria x ananassa HOM05D005711 ORTHO05D007125 7.4e-07 60.8 47 51.1


User provided reference genes

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