Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2680.6 1354 100.0
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2614.3 1382 96.2
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2497.6 1383 90.4
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2487.2 1383 89.7
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2483.4 1383 89.7
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2481.8 1382 89.8
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2479.1 1383 89.6
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2477.2 1385 89.3
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2476.4 1383 89.4
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2476.0 1382 89.6
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2474.5 1383 89.6
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2473.0 1398 89.1
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2466.0 1382 89.1
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2465.6 1385 88.9
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2464.5 1382 89.0
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2464.1 1385 88.8
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2463.7 1382 88.9
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2457.9 1382 89.0
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2455.6 1383 88.6
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2455.6 1382 89.1
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2454.9 1398 87.4
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2449.9 1382 87.9
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2449.9 1386 88.3
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2449.5 1375 88.2
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2447.5 1383 88.1
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2446.0 1383 87.9
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2445.6 1383 88.1
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2445.2 1384 88.5
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2443.7 1383 88.1
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2442.5 1382 88.2
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2442.2 1382 88.3
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2441.0 1388 88.0
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2441.0 1383 88.5
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2440.6 1383 88.9
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2440.6 1388 88.0
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2439.8 1383 88.4
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2439.8 1384 87.5
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2439.1 1377 88.8
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2438.7 1383 87.8
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2438.3 1384 88.2
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2437.5 1382 88.0
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2436.0 1383 87.3
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2434.8 1384 88.1
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2432.1 1385 87.7
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2432.1 1382 87.6
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2429.1 1384 87.5
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2429.1 1382 87.8
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2427.5 1382 87.6
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2425.2 1374 87.9
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2424.4 1382 87.4
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2424.4 1382 87.4
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2424.0 1382 87.4
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2423.3 1382 87.3
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2422.9 1382 87.3
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2420.6 1385 86.9
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2419.4 1384 87.6
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2417.1 1409 85.9
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2416.3 1384 87.2
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2414.0 1382 87.0
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2410.6 1374 87.9
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2405.6 1384 86.7
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2402.1 1393 85.9
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2401.7 1383 86.0
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2401.3 1383 86.5
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2400.5 1383 86.0
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2399.4 1384 86.6
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2392.5 1386 85.6
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2390.5 1384 86.1
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2387.8 1328 89.4
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2380.1 1384 85.3
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2379.7 1384 85.5
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2378.2 1374 86.4
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2377.8 1384 85.5
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2371.7 1385 85.2
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2369.0 1384 85.3
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2366.3 1384 85.3
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2364.3 1446 82.0
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2357.4 1385 84.3
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2355.9 1359 85.9
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2354.7 1355 86.2
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2339.7 1256 93.2
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2333.9 1384 84.5
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2329.7 1378 84.6
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2329.3 1384 84.3
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2327.4 1384 84.3
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2322.4 1384 84.1
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2317.3 1384 83.9
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2315.0 1384 83.8
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2315.0 1384 83.8
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2315.0 1384 83.8
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2306.6 1384 83.6
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2306.6 1384 83.6
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2305.0 1384 83.5
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2297.7 1408 82.4
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2288.8 1385 82.9
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2277.3 1384 82.9
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2276.1 1383 82.6
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2270.4 1260 90.1
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2234.9 1354 81.4
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2214.1 1349 80.9
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2199.5 1258 86.8
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2153.3 1339 81.7
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2113.2 1342 77.0
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2106.3 1340 76.8
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2101.6 1333 77.2
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2085.8 1343 76.5
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2085.8 1343 76.5
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2073.5 1344 74.9
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1973.7 1114 88.0
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1949.5 1102 87.7
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1923.7 1373 73.6
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1857.0 1400 71.4
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1812.3 1332 67.6
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1791.2 1359 65.9
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1625.5 1374 64.4
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1612.0 904 87.9
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1605.5 896 88.7
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1484.9 809 91.2
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1475.3 808 91.0
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1107.4 690 81.0
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1088.9 675 81.0
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 2.8e-298 1029.2 669 79.1
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 3.9e-284 982.2 571 83.9
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 2.4e-257 893.3 1202 44.0
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 6.9e-249 865.1 584 76.0
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 3.5e-245 852.8 470 89.4
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 4.6e-245 852.4 470 89.4
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 8.4e-239 831.6 471 86.8
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 2.2e-218 763.8 471 81.7
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 1.0e-191 675.2 398 83.7
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 2.0e-163 581.3 1412 31.1
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 8.1e-149 532.7 1487 28.5
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 6.1e-104 383.6 1271 27.6
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 5.9e-75 287.3 175 82.3
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 1.3e-66 259.6 147 86.4
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 7.8e-51 207.2 115 85.2
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 6.2e-48 197.6 107 91.6
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 3.3e-41 175.3 197 52.8
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 2.4e-31 142.5 139 51.8
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 2.0e-22 112.8 92 63.0
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 3.2e-20 105.5 77 70.1
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 3.2e-20 105.5 87 63.2


User provided reference genes

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