Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 2.1e-171 605.5 287 100.0
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 2.1e-171 605.5 287 100.0
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 2.8e-168 595.1 287 98.3
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 8.5e-157 557.0 284 92.6
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 4.7e-155 551.2 288 91.0
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 5.7e-153 544.3 284 89.1
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 1.7e-152 542.7 284 88.4
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 3.7e-152 541.6 284 88.7
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 2.4e-151 538.9 287 88.2
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 2.4e-151 538.9 284 87.7
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 9.1e-151 537.0 284 87.0
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 9.1e-151 537.0 286 88.5
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 1.2e-150 536.6 283 88.0
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 1.2e-150 536.6 283 88.0
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 7.7e-150 533.9 284 88.4
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 7.7e-150 533.9 282 89.0
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 1.3e-149 533.1 285 87.0
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 2.2e-149 532.3 284 88.7
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 2.9e-149 531.9 284 85.9
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 3.8e-149 531.6 284 86.6
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 3.8e-149 531.6 284 86.6
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 5.0e-149 531.2 284 87.7
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 6.5e-149 530.8 284 87.3
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 1.1e-148 530.0 284 87.3
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 1.5e-148 529.6 284 87.0
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 1.9e-148 529.3 285 87.7
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 1.9e-148 529.3 284 87.0
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 1.9e-148 529.3 283 86.9
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 1.9e-148 529.3 284 87.0
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 2.5e-148 528.9 282 88.3
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 3.2e-148 528.5 281 87.9
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 5.5e-148 527.7 284 86.6
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 7.2e-148 527.3 284 85.9
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 9.4e-148 526.9 281 87.5
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 1.2e-147 526.6 284 86.3
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 1.6e-147 526.2 284 85.6
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.1e-147 525.8 284 87.3
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 3.6e-147 525.0 284 85.6
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 3.6e-147 525.0 284 86.3
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 4.7e-147 524.6 288 86.1
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 8.0e-147 523.9 284 85.2
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 1.0e-146 523.5 285 83.9
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 1.4e-146 523.1 284 85.2
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 3.0e-146 521.9 284 86.3
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 4.0e-146 521.5 290 86.2
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 4.0e-146 521.5 284 84.2
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 6.8e-146 520.8 284 86.3
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 8.8e-146 520.4 285 83.2
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 1.5e-145 519.6 284 84.9
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 4.4e-145 518.1 284 85.2
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 7.5e-145 517.3 286 84.6
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 9.8e-145 516.9 284 84.2
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 9.8e-145 516.9 286 85.3
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 9.8e-145 516.9 285 84.6
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 9.8e-145 516.9 282 84.8
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 1.7e-144 516.2 284 85.6
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 2.2e-144 515.8 284 84.2
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 3.7e-144 515.0 283 85.2
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 3.7e-144 515.0 284 84.5
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 4.8e-144 514.6 284 86.3
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 6.3e-144 514.2 283 84.1
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 5.4e-143 511.1 282 85.1
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 7.0e-143 510.8 281 84.3
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.0e-141 506.9 286 82.9
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 1.7e-141 506.1 284 84.9
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 6.5e-141 504.2 281 83.6
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 1.1e-140 503.4 272 84.6
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 1.1e-140 503.4 284 82.7
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 1.9e-140 502.7 279 83.9
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 2.5e-140 502.3 284 82.7
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 1.2e-139 500.0 285 82.1
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.6e-139 499.6 301 78.7
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 2.1e-139 499.2 279 84.2
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 3.6e-139 498.4 284 81.3
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 3.6e-139 498.4 283 82.0
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 3.0e-138 495.4 284 81.0
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 4.0e-138 495.0 284 81.3
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 5.2e-138 494.6 281 82.9
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 8.9e-138 493.8 284 81.7
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 8.9e-138 493.8 284 82.0
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 1.2e-137 493.4 279 83.2
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 2.6e-137 492.3 298 80.2
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 2.6e-137 492.3 284 80.6
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 4.4e-137 491.5 284 81.3
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 7.5e-137 490.7 284 81.7
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 9.8e-137 490.3 279 82.8
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 2.8e-136 488.8 275 82.9
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 3.7e-136 488.4 284 80.3
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 1.1e-135 486.9 284 79.6
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 1.1e-135 486.9 284 80.3
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 1.1e-135 486.9 284 79.6
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 1.4e-135 486.5 282 80.9
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 1.8e-135 486.1 284 79.9
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 7.0e-135 484.2 281 78.6
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 1.2e-134 483.4 285 81.4
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 1.2e-134 483.4 285 81.4
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 1.6e-134 483.0 285 81.4
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 1.6e-134 483.0 284 80.3
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 2.7e-134 482.3 285 81.1
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 3.5e-134 481.9 283 80.6
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 4.5e-134 481.5 284 78.5
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 5.9e-134 481.1 334 69.8
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 7.8e-134 480.7 284 81.0
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 2.3e-133 479.2 284 79.6
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 1.7e-128 463.0 275 77.1
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 4.9e-128 461.5 246 87.8
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 9.2e-127 457.2 284 76.1
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 4.6e-126 454.9 281 75.8
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 8.0e-123 444.1 276 73.6
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 1.8e-122 443.0 286 76.9
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 2.3e-122 442.6 274 76.6
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.9e-119 433.0 235 86.0
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 8.6e-117 424.1 281 68.7
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 5.2e-114 414.8 234 80.8
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 8.9e-114 414.1 225 87.1
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 1.5e-108 396.7 279 67.0
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 2.8e-107 392.5 278 66.9
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 1.5e-105 386.7 196 90.8
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 1.7e-104 383.3 277 65.3
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 4.0e-98 362.1 219 76.3
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 3.4e-89 332.4 283 58.0
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 7.6e-89 331.3 288 60.1
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 9.9e-89 330.9 272 61.8
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 6.4e-80 301.6 171 84.2
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 1.6e-78 297.0 166 83.7
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 9.6e-76 287.7 258 53.1
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 5.5e-63 245.4 273 47.3
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 2.0e-60 236.9 283 45.9
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 6.3e-59 231.9 277 45.1
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 2.9e-56 223.0 231 50.6
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 2.6e-52 209.9 115 81.7
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 3.3e-44 183.0 103 80.6
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 5.7e-20 102.4 78 62.8
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 5.0e-16 89.4 61 67.2
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 2.1e-14 84.0 71 57.7
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 5.4e-10 69.3 56 53.6
PSO765G0043 Papaver somniferum HOM05D005608 ORTHO05D302623 1.6e-06 57.8 39 71.8


User provided reference genes

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