Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 1.2e-178 629.8 329 100.0
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 3.1e-147 525.4 329 87.5
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 2.1e-143 512.7 329 84.2
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 4.6e-130 468.4 357 73.9
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 3.6e-127 458.8 355 73.5
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 7.5e-125 451.1 334 73.4
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 1.3e-124 450.3 327 74.3
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 2.2e-124 449.5 327 74.0
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 2.9e-124 449.1 328 73.8
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.2e-122 443.7 328 73.2
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 3.5e-122 442.2 325 72.6
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 6.0e-122 441.4 329 71.4
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 6.0e-122 441.4 328 73.2
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 6.0e-122 441.4 330 73.3
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 6.0e-122 441.4 330 73.3
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 1.0e-121 440.7 326 73.6
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 1.7e-121 439.9 331 72.8
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 2.3e-121 439.5 335 72.8
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 2.3e-121 439.5 331 72.8
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 2.3e-121 439.5 328 71.6
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 2.3e-121 439.5 324 74.1
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 3.0e-121 439.1 326 73.3
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 5.1e-121 438.3 330 72.4
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 6.6e-121 438.0 330 72.4
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 6.6e-121 438.0 330 72.7
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 6.6e-121 438.0 330 72.1
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.6e-121 437.6 331 72.5
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.6e-121 437.6 331 72.5
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 8.6e-121 437.6 331 72.5
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 5.6e-120 434.9 327 73.4
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 7.3e-120 434.5 324 72.8
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 1.6e-119 433.3 325 72.3
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.1e-118 430.6 323 71.5
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.4e-118 430.3 327 70.6
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 1.8e-118 429.9 329 71.1
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 2.4e-118 429.5 328 71.3
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 5.2e-118 428.3 329 71.1
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 2.0e-117 426.4 337 69.7
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 4.4e-117 425.2 318 72.6
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 9.9e-117 424.1 317 71.9
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 4.9e-116 421.8 317 71.9
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 6.4e-116 421.4 340 69.1
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 8.4e-116 421.0 321 72.0
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 1.1e-115 420.6 339 69.0
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 1.1e-115 420.6 339 69.0
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 1.4e-115 420.2 330 69.4
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 2.4e-115 419.5 317 71.6
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 2.4e-115 419.5 334 69.2
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 2.4e-115 419.5 328 70.1
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 3.2e-115 419.1 327 70.3
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 3.2e-115 419.1 328 68.9
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 3.2e-115 419.1 323 70.6
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 1.6e-114 416.8 325 69.8
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 2.1e-114 416.4 323 68.7
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 2.7e-114 416.0 317 71.3
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 2.7e-114 416.0 323 69.3
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 2.7e-114 416.0 323 69.3
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 2.7e-114 416.0 320 71.2
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 4.6e-114 415.2 320 70.9
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 7.8e-114 414.5 323 69.0
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 1.3e-113 413.7 337 68.0
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.7e-113 413.3 318 72.0
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 1.7e-113 413.3 327 68.8
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 2.3e-113 412.9 328 67.7
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.3e-113 412.9 301 74.8
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 3.0e-113 412.5 327 69.4
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 5.1e-113 411.8 330 66.7
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 6.6e-113 411.4 321 70.7
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 6.6e-113 411.4 321 70.7
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 1.1e-112 410.6 330 67.0
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 1.1e-112 410.6 368 63.0
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 1.1e-112 410.6 337 67.4
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 1.9e-112 409.8 330 67.3
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.9e-112 409.8 302 73.8
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 3.3e-112 409.1 329 68.7
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.3e-112 409.1 301 74.1
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 3.3e-112 409.1 329 67.2
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 4.3e-112 408.7 320 68.1
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 5.6e-112 408.3 323 68.7
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 5.6e-112 408.3 321 70.4
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 5.6e-112 408.3 328 67.7
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 1.2e-111 407.1 319 69.3
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 1.6e-111 406.8 323 67.8
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 2.1e-111 406.4 319 69.3
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 6.2e-111 404.8 323 67.5
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 6.2e-111 404.8 323 68.1
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 8.1e-111 404.4 323 67.5
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 1.1e-110 404.1 323 67.8
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 1.4e-110 403.7 323 67.8
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 1.4e-110 403.7 335 66.9
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 1.8e-110 403.3 323 67.5
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 2.4e-110 402.9 329 66.0
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 4.0e-110 402.1 324 67.6
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 4.0e-110 402.1 324 67.6
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 4.0e-110 402.1 325 67.4
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 6.9e-110 401.4 324 68.5
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 1.5e-109 400.2 319 67.7
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 2.0e-109 399.8 324 67.3
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.0e-109 399.8 328 65.2
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 2.6e-109 399.4 323 65.6
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 2.6e-109 399.4 329 65.3
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 7.6e-109 397.9 323 66.9
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 9.9e-109 397.5 324 66.7
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 1.3e-108 397.1 325 66.8
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.2e-108 396.4 302 72.5
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 8.4e-108 394.4 323 67.2
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.4e-107 393.7 329 64.7
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 3.2e-107 392.5 329 65.7
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 5.4e-107 391.7 320 65.9
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 1.2e-106 390.6 328 65.5
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.9e-104 383.3 320 67.8
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.8e-100 369.0 301 70.1
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 1.6e-98 363.6 327 60.6
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 1.3e-97 360.5 331 61.0
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.3e-97 360.5 319 62.7
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 3.0e-97 359.4 326 60.1
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 6.7e-97 358.2 287 66.9
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 8.7e-97 357.8 320 62.5
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 8.7e-97 357.8 323 61.6
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 1.5e-96 357.1 218 86.2
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 2.5e-96 356.3 312 62.5
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.5e-96 356.3 269 71.4
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 4.3e-96 355.5 328 59.8
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 6.9e-94 348.2 330 57.0
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 2.9e-92 342.8 323 60.4
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 3.5e-90 335.9 326 57.4
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 3.0e-89 332.8 322 54.3
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 1.3e-87 327.4 314 55.1
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 1.1e-86 324.3 315 55.6
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 1.3e-84 317.4 324 58.0
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 3.9e-81 305.8 274 62.8
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 5.3e-78 295.4 320 49.1
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 2.6e-77 293.1 336 51.5
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 2.1e-74 283.5 236 66.5
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 2.3e-73 280.0 163 87.1
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 3.8e-68 262.7 317 46.1
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 6.1e-66 255.4 247 55.9
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 8.8e-65 251.5 206 67.0
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 6.3e-63 245.4 239 56.9
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.7e-60 237.3 163 76.1
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 4.2e-59 232.6 313 45.0
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 6.1e-58 228.8 224 59.8
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 5.0e-52 209.1 280 41.4
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 7.2e-43 178.7 184 57.1
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 7.2e-43 178.7 184 57.1
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 1.0e-41 174.9 175 59.4
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 5.4e-38 162.5 107 74.8
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 5.4e-38 162.5 107 74.8
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 1.2e-32 144.8 189 47.6
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 4.4e-32 142.9 96 76.0
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 4.9e-31 139.4 81 85.2
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 5.9e-29 132.5 100 70.0
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 4.4e-24 116.3 82 68.3
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 6.2e-18 95.9 80 57.5
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 8.9e-17 92.0 80 55.0
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 1.5e-16 91.3 80 55.0
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 9.8e-16 88.6 52 88.5
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 3.7e-15 86.7 57 77.2
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 1.1e-14 85.1 155 35.5
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.9e-14 84.3 70 71.4
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 3.2e-14 83.6 80 52.5
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 3.2e-14 83.6 81 54.3
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 2.3e-12 77.4 68 60.3
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 3.0e-12 77.0 58 63.8
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 8.6e-12 75.5 68 60.3
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 1.2e-08 65.1 44 72.7
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 7.5e-08 62.4 43 72.1
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 7.5e-08 62.4 43 72.1
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 1.3e-07 61.6 121 34.7


User provided reference genes

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