Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 0.0e+00 1166.8 586 100.0
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 1.9e-235 819.3 427 97.7
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 2.4e-230 802.4 588 72.4
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 8.5e-228 793.9 591 71.9
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.1e-227 793.5 591 71.9
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 1.9e-219 766.1 587 69.5
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.1e-216 756.9 594 69.4
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.4e-211 740.0 594 67.3
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 1.6e-210 736.5 591 67.7
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 3.9e-209 731.9 591 67.5
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 2.6e-208 729.2 591 67.2
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 3.3e-208 728.8 594 65.8
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 4.4e-208 728.4 587 66.1
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 7.4e-208 727.6 588 67.0
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.5e-205 718.8 587 65.1
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.0e-204 717.2 596 65.3
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.7e-204 716.5 598 64.7
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 2.9e-204 715.7 593 66.6
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.9e-204 715.7 591 64.6
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 2.9e-204 715.7 602 64.5
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 3.8e-204 715.3 589 66.2
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 6.5e-204 714.5 591 64.5
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.1e-203 713.8 590 64.6
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.5e-203 713.4 584 64.7
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.5e-203 713.4 584 64.7
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 3.2e-203 712.2 588 65.0
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.1e-202 709.5 598 63.7
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 3.6e-202 708.8 592 65.4
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 6.1e-202 708.0 499 72.5
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 8.0e-202 707.6 605 64.1
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 1.8e-201 706.4 586 64.0
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 5.2e-201 704.9 586 62.8
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 5.2e-201 704.9 586 62.8
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 6.7e-201 704.5 607 62.8
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 6.7e-201 704.5 590 64.7
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 1.5e-200 703.4 589 64.7
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 2.6e-200 702.6 613 62.2
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 5.7e-200 701.4 591 63.6
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 9.7e-200 700.7 614 61.6
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 1.7e-199 699.9 593 62.7
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 4.5e-197 691.8 586 63.0
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 3.8e-196 688.7 590 62.9
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 2.7e-194 682.6 601 62.7
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 4.7e-194 681.8 591 61.4
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 8.0e-194 681.0 541 66.2
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 5.7e-192 674.9 556 65.1
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 6.3e-191 671.4 591 61.6
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 8.3e-191 671.0 590 62.0
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 5.4e-190 668.3 590 61.4
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.6e-189 666.8 608 61.2
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 3.5e-189 665.6 405 80.7
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 5.9e-189 664.8 499 68.1
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 5.0e-188 661.8 597 59.1
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.1e-187 660.6 545 64.8
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 1.1e-187 660.6 593 60.4
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 4.2e-187 658.7 588 61.1
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 5.2e-185 651.7 597 59.6
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.5e-184 650.2 530 61.5
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 2.0e-184 649.8 595 58.5
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 9.8e-184 647.5 591 61.8
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 1.3e-183 647.1 596 60.1
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.7e-183 646.7 566 60.8
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 3.1e-182 642.5 586 59.9
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 7.0e-182 641.3 499 65.9
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 7.8e-181 637.9 605 57.9
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 1.7e-180 636.7 594 58.8
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 8.6e-180 634.4 842 47.0
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 7.3e-179 631.3 598 57.5
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 9.5e-179 630.9 592 57.3
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 2.1e-178 629.8 591 56.7
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 1.0e-177 627.5 598 56.9
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 3.0e-177 625.9 600 55.8
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 8.9e-177 624.4 591 56.5
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 2.6e-176 622.9 590 58.0
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 7.5e-176 621.3 547 60.5
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 1.3e-175 620.5 591 56.9
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.7e-175 620.2 594 56.4
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.7e-175 620.2 594 56.4
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 6.4e-175 618.2 597 56.6
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 4.1e-174 615.5 592 57.1
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 9.2e-174 614.4 590 56.9
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 2.7e-173 612.8 592 56.9
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 1.3e-172 610.5 607 55.7
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 1.7e-172 610.1 589 56.0
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 5.0e-172 608.6 592 56.9
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 3.1e-169 599.4 608 54.6
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 1.5e-168 597.0 610 54.8
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 4.9e-167 592.0 468 64.7
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 4.9e-167 592.0 457 67.2
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.4e-166 589.7 492 65.4
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 7.0e-166 588.2 592 55.4
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.0e-164 584.3 562 58.2
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 8.6e-164 581.3 476 61.6
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.2e-160 570.9 470 63.6
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 1.5e-160 570.5 558 55.6
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 2.7e-157 559.7 654 50.8
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.2e-154 550.8 654 50.6
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 2.1e-154 550.1 596 54.0
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 6.2e-154 548.5 416 67.8
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 8.1e-154 548.1 517 55.7
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 3.1e-153 546.2 563 53.6
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 8.9e-153 544.7 422 69.0
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 3.4e-152 542.7 530 56.4
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 5.8e-152 542.0 414 69.8
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 1.9e-142 510.4 619 48.6
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 8.1e-138 495.0 603 50.4
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 9.3e-134 481.5 532 50.6
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 6.7e-132 475.3 518 51.7
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 9.0e-129 464.9 607 47.9
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 1.7e-119 434.1 424 53.1
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 1.9e-115 420.6 412 56.8
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 5.7e-115 419.1 501 50.3
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.5e-112 411.0 532 44.2
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 2.7e-109 400.2 531 44.3
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 1.5e-104 384.4 605 41.5
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 2.6e-96 357.1 279 66.3
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 3.4e-96 356.7 402 53.7
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 2.7e-85 320.5 401 43.9
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.3e-82 311.6 280 58.6
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 1.7e-82 311.2 400 43.5
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 8.2e-82 308.9 364 48.6
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 3.4e-75 287.0 425 40.2
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 3.7e-74 283.5 431 42.2
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 4.1e-65 253.4 238 61.8
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 7.5e-51 206.1 251 48.6
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 5.4e-49 199.9 160 64.4
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 7.8e-48 196.1 236 51.3
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 7.3e-46 189.5 223 46.6
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 2.8e-45 187.6 233 50.6
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.8e-45 187.6 233 50.6
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 3.4e-43 180.6 168 61.9
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 3.5e-40 170.6 174 57.5
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 8.6e-39 166.0 236 47.5
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.1e-37 161.4 336 36.3
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.1e-37 161.4 166 57.2
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 2.1e-37 161.4 153 62.1
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 6.8e-36 156.4 109 76.1
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 3.4e-35 154.1 100 71.0
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.4e-35 153.7 167 57.5
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 9.9e-35 152.5 229 45.4
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.6e-32 143.7 232 43.1
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 1.1e-30 139.0 180 46.1
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 2.1e-29 134.8 134 59.0
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 4.4e-27 127.1 161 48.4
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 3.8e-26 124.0 105 56.2
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 3.2e-25 120.9 186 41.4
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 5.4e-25 120.2 79 75.9
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 8.1e-21 106.3 231 35.1
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 8.1e-21 106.3 225 35.1
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 8.1e-21 106.3 70 77.1
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 1.4e-20 105.5 225 35.6
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 3.1e-20 104.4 120 56.7
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 4.0e-20 104.0 176 39.2
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.2e-18 98.2 163 38.0
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 8.4e-18 96.3 133 50.4
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.2e-16 92.4 62 71.0
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 7.9e-16 89.7 62 69.4
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 7.9e-16 89.7 92 52.2
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 6.7e-15 86.7 144 31.9
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 1.2e-08 65.9 45 73.3
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 1.2e-08 65.9 45 73.3
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 1.2e-08 65.9 45 73.3
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 2.7e-08 64.7 39 71.8
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 2.7e-08 64.7 39 71.8
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 2.7e-08 64.7 39 71.8
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 2.7e-08 64.7 39 71.8
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 2.7e-08 64.7 255 25.9
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 2.7e-08 64.7 158 29.7
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 1.9e-06 58.5 43 74.4


User provided reference genes

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