Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_19416 Corylus avellana HOM05D006263 ORTHO05D007549 4.7e-202 707.6 345 100.0
Haze_19445 Corylus avellana HOM05D006263 ORTHO05D007549 5.2e-201 704.1 345 99.4
Cfa016439 Carpinus fangiana HOM05D006263 ORTHO05D007549 4.3e-195 684.5 345 96.2
CiPaw.10G000900 Carya illinoinensis HOM05D006263 ORTHO05D007549 2.1e-162 575.9 350 80.9
Dinv14580 Davidia involucrata HOM05D006263 ORTHO05D007549 1.2e-149 533.5 346 74.9
QL07p019666 Quercus lobata HOM05D006263 ORTHO05D007549 1.2e-149 533.5 346 74.9
COL.COLO4_13602 Corchorus olitorius HOM05D006263 ORTHO05D007549 2.1e-149 532.7 341 74.5
Gorai.007G289300 Gossypium raimondii HOM05D006263 ORTHO05D007549 1.1e-147 526.9 342 71.3
Gohir.A11G259300 Gossypium hirsutum HOM05D006263 ORTHO05D007549 4.3e-147 525.0 342 71.3
Thecc.05G294200 Theobroma cacao HOM05D006263 ORTHO05D007549 4.3e-147 525.0 345 74.2
Gohir.D11G269500 Gossypium hirsutum HOM05D006263 ORTHO05D007549 5.6e-147 524.6 342 71.3
TWI34G1357 Tripterygium wilfordii HOM05D006263 ORTHO05D007549 2.1e-146 522.7 348 74.4
GSVIVG01033398001 Vitis vinifera HOM05D006263 ORTHO05D007549 1.4e-145 520.0 339 73.5
TAR623G0038 Trochodendron aralioides HOM05D006263 ORTHO05D007549 5.3e-145 518.1 341 73.9
Duzib177G1028 Durio zibethinus HOM05D006263 ORTHO05D007549 5.8e-144 514.6 338 73.4
Manes.09G141600 Manihot esculenta HOM05D006263 ORTHO05D007549 8.4e-143 510.8 346 71.4
Ciclev10020896m.g Citrus clementina HOM05D006263 ORTHO05D007549 1.6e-141 506.5 352 69.3
C09p58780 Brassica napus HOM05D006263 ORTHO05D007549 4.6e-141 505.0 340 68.2
Oeu060008.1 Olea europaea HOM05D006263 ORTHO05D007549 1.0e-140 503.8 343 70.3
Sp6g26120 Schrenkiella parvula HOM05D006263 ORTHO05D007549 3.0e-140 502.3 340 67.9
BraA10t44195Z Brassica rapa HOM05D006263 ORTHO05D007549 3.9e-140 501.9 340 67.4
BcaC04g18720 Brassica carinata HOM05D006263 ORTHO05D007549 5.1e-140 501.5 340 67.9
BcaB08g36696 Brassica carinata HOM05D006263 ORTHO05D007549 6.7e-140 501.1 338 68.6
A10p21320 Brassica napus HOM05D006263 ORTHO05D007549 6.7e-140 501.1 340 67.6
Prupe.7G003700 Prunus persica HOM05D006263 ORTHO05D007549 6.7e-140 501.1 337 72.4
Potri.006G233200 Populus trichocarpa HOM05D006263 ORTHO05D007549 2.5e-139 499.2 339 71.1
BolC9t58720H Brassica oleracea HOM05D006263 ORTHO05D007549 5.6e-139 498.0 341 67.4
Lj2A357T95 Lonicera japonica HOM05D006263 ORTHO05D007549 5.6e-139 498.0 346 70.5
Aqoxy1G00489 Aquilegia oxysepala HOM05D006263 ORTHO05D007549 9.6e-139 497.3 342 69.3
Carub.0006s1648 Capsella rubella HOM05D006263 ORTHO05D007549 1.3e-138 496.9 336 67.9
Phvul.004G080400 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 2.1e-138 496.1 336 71.7
CSS0025413 Camellia sinensis var. sinensis HOM05D006263 ORTHO05D007549 2.8e-138 495.7 344 69.8
Atru.chr2.1379 Acer truncatum HOM05D006263 ORTHO05D007549 4.8e-138 495.0 340 70.3
Glyma.16G153300 Glycine max HOM05D006263 ORTHO05D007549 4.8e-138 495.0 343 68.5
AT5G18200 Arabidopsis thaliana HOM05D006263 ORTHO05D007549 6.2e-138 494.6 340 67.6
Thhalv10013996m.g Eutrema salsugineum HOM05D006263 ORTHO05D007549 6.2e-138 494.6 340 67.1
VMungo0464G2181 Vigna mungo HOM05D006263 ORTHO05D007549 8.1e-138 494.2 344 69.8
Potri.019G034400 Populus trichocarpa HOM05D006263 ORTHO05D007549 1.1e-137 493.8 338 69.8
Rhsim04G0087300 Rhododendron simsii HOM05D006263 ORTHO05D007549 1.1e-137 493.8 345 69.9
DCAR_013689 Daucus carota HOM05D006263 ORTHO05D007549 2.4e-137 492.7 339 69.6
AL6G29400 Arabidopsis lyrata HOM05D006263 ORTHO05D007549 4.0e-137 491.9 340 67.9
ClCG05G001960 Citrullus lanatus HOM05D006263 ORTHO05D007549 4.0e-137 491.9 345 68.4
THA.LOC104827270 Tarenaya hassleriana HOM05D006263 ORTHO05D007549 5.3e-137 491.5 341 68.0
MELO3C006156.2 Cucumis melo HOM05D006263 ORTHO05D007549 9.0e-137 490.7 346 68.8
CARHR194860 Cardamine hirsuta HOM05D006263 ORTHO05D007549 1.2e-136 490.3 340 65.9
CANSAT78G2484 Cannabis sativa HOM05D006263 ORTHO05D007549 1.5e-136 490.0 341 68.6
PGR042G1093 Punica granatum HOM05D006263 ORTHO05D007549 2.6e-136 489.2 344 68.3
PSO339G1401 Papaver somniferum HOM05D006263 ORTHO05D007549 3.4e-136 488.8 340 68.2
PSO384G1918 Papaver somniferum HOM05D006263 ORTHO05D007549 3.4e-136 488.8 339 67.8
MD12G1003100 Malus domestica HOM05D006263 ORTHO05D007549 4.5e-136 488.4 343 70.0
Sabra19G0044500 Salix brachista HOM05D006263 ORTHO05D007549 2.2e-135 486.1 338 68.6
Lj6g0008715 Lotus japonicus HOM05D006263 ORTHO05D007549 4.9e-135 485.0 335 69.9
Nn7g35844 Nelumbo nucifera HOM05D006263 ORTHO05D007549 6.5e-135 484.6 343 68.2
Lalb_Chr06g0173981 Lupinus albus HOM05D006263 ORTHO05D007549 8.4e-135 484.2 349 67.6
Migut.B01469 Erythranthe guttata HOM05D006263 ORTHO05D007549 4.2e-134 481.9 341 68.0
Hund06464 Selenicereus undatus HOM05D006263 ORTHO05D007549 9.3e-134 480.7 342 67.5
Nitab4.5_0002825g0060 Nicotiana tabacum HOM05D006263 ORTHO05D007549 2.1e-133 479.6 336 67.3
RcHm_v2.0_Chr3g0497171 Rosa chinensis HOM05D006263 ORTHO05D007549 2.1e-133 479.6 341 68.6
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 3.5e-133 478.8 339 66.7
Psat1g096040 Pisum sativum HOM05D006263 ORTHO05D007549 6.0e-133 478.0 343 65.3
Solyc10g050850.2 Solanum lycopersicum HOM05D006263 ORTHO05D007549 1.0e-132 477.2 337 68.5
Eucgr.L01413 Eucalyptus grandis HOM05D006263 ORTHO05D007549 1.3e-132 476.9 342 67.3
CAN.G216.5 Capsicum annuum HOM05D006263 ORTHO05D007549 1.8e-132 476.5 337 67.7
Aa31LG11G11400 Aethionema arabicum HOM05D006263 ORTHO05D007549 2.3e-132 476.1 374 62.6
Eucgr.K02258 Eucalyptus grandis HOM05D006263 ORTHO05D007549 3.9e-132 475.3 342 67.0
PGSC0003DMG400008259 Solanum tuberosum HOM05D006263 ORTHO05D007549 3.9e-132 475.3 337 68.8
Sopen10g022420 Solanum pennellii HOM05D006263 ORTHO05D007549 6.7e-132 474.6 337 68.0
Nitab4.5_0000001g0100 Nicotiana tabacum HOM05D006263 ORTHO05D007549 8.7e-132 474.2 336 66.4
Ca_04490_v3 Cicer arietinum L. HOM05D006263 ORTHO05D007549 4.8e-130 468.4 340 67.1
TAR369G0989 Trochodendron aralioides HOM05D006263 ORTHO05D007549 1.4e-129 466.8 338 68.3
Medtr6g029470 Medicago truncatula HOM05D006263 ORTHO05D007549 1.8e-129 466.5 342 65.2
Sabra19G0042300 Salix brachista HOM05D006263 ORTHO05D007549 1.8e-129 466.5 384 60.7
Cc06_g22910 Coffea canephora HOM05D006263 ORTHO05D007549 2.4e-129 466.1 341 66.6
HanXRQChr01g0024721 Helianthus annuus HOM05D006263 ORTHO05D007549 2.4e-129 466.1 348 64.7
MSTRG.20649 Avicennia marina HOM05D006263 ORTHO05D007549 3.1e-129 465.7 340 67.1
SGA_v2.0_scaffold145G36025 Striga asiatica HOM05D006263 ORTHO05D007549 1.7e-127 459.9 340 64.4
Lsat_1_v5_gn_1_59641 Lactuca sativa HOM05D006263 ORTHO05D007549 3.8e-127 458.8 338 63.6
HPP92_015639 Vanilla planifolia HOM05D006263 ORTHO05D007549 5.0e-127 458.4 345 62.6
AUR62012878 Chenopodium quinoa HOM05D006263 ORTHO05D007549 1.2e-125 453.8 340 65.0
ECA285G0004 Erigeron canadensis HOM05D006263 ORTHO05D007549 3.6e-125 452.2 342 62.9
AUR62027102 Chenopodium quinoa HOM05D006263 ORTHO05D007549 1.0e-124 450.7 340 64.4
unitig_26.g9717 Utricularia gibba HOM05D006263 ORTHO05D007549 3.0e-124 449.1 339 63.4
Cpa.g.sc51.112 Carica papaya HOM05D006263 ORTHO05D007549 6.7e-124 448.0 347 65.7
CDE02G1162 Ceratophyllum demersum HOM05D006263 ORTHO05D007549 1.5e-123 446.8 338 63.6
FvH4_1g28080 Fragaria vesca HOM05D006263 ORTHO05D007549 1.5e-123 446.8 336 65.2
FAN23G2537 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.5e-123 446.8 336 64.6
Peaxi162Scf00076g01055 Petunia axillaris HOM05D006263 ORTHO05D007549 2.5e-123 446.0 347 62.0
FAN19G0970 Fragaria x ananassa HOM05D006263 ORTHO05D007549 3.3e-123 445.7 336 64.9
ATR0697G038 Amborella trichopoda HOM05D006263 ORTHO05D007549 3.7e-122 442.2 376 59.3
FAN26G0246 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.4e-121 439.5 336 64.3
FAN28G0550 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.4e-121 439.5 336 64.3
Ca_04491_v3 Cicer arietinum L. HOM05D006263 ORTHO05D000429 7.7e-120 434.5 336 62.5
FAN28G1368 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.3e-119 433.7 336 63.1
Zm00001eb301000 Zea mays HOM05D006263 ORTHO05D007549 1.3e-119 433.7 352 59.7
Psat1g096000 Pisum sativum HOM05D006263 ORTHO05D007549 2.0e-115 419.9 337 61.1
EL10Ac9g22064 Beta vulgaris HOM05D006263 ORTHO05D007549 1.3e-114 417.2 347 59.7
TPR.G34629 Trifolium pratense HOM05D006263 ORTHO05D007549 1.1e-113 414.1 337 59.1
Actinidia17306 Actinidia chinensis HOM05D000412 ORTHO05D000429 6.9e-113 411.4 285 71.2
vmacro09144 Vaccinium macrocarpon HOM05D006263 ORTHO05D007549 6.9e-113 411.4 347 60.5
SalBow5G0264 Salvia bowleyana HOM05D006263 ORTHO05D007549 1.2e-112 410.6 340 60.3
Medtr6g029530 Medicago truncatula HOM05D006263 ORTHO05D007549 2.0e-112 409.8 337 57.6
MBI11_g31289_MAGBIO Magnolia biondii HOM05D006263 ORTHO05D007549 1.9e-110 403.3 351 59.3
Oeu003888.1 Olea europaea HOM05D006263 ORTHO05D007549 1.6e-109 400.2 265 71.7
Sc18g0007080 Simmondsia chinensis HOM05D006263 ORTHO05D007549 2.1e-109 399.8 338 59.2
Ah.01g007390 Amaranthus hybridus HOM05D006263 ORTHO05D007549 2.7e-109 399.4 440 48.2
SEGI_37923 Sequoiadendron giganteum HOM05D006263 ORTHO05D007549 1.5e-102 377.1 345 53.9
Eucgr.A02096 Eucalyptus grandis HOM05D006263 ORTHO05D007549 7.0e-97 358.2 293 63.5
CsaV3_3G009370 Cucumis sativus L. HOM05D006263 ORTHO05D007549 1.9e-94 350.1 262 66.0
Sed0020840 Sechium edule HOM05D006263 ORTHO05D007549 5.5e-94 348.6 260 66.2
Os07g0171200 Oryza sativa ssp. japonica HOM05D006263 ORTHO05D007549 7.7e-88 328.2 229 66.8
Hma1.2p1_0376F.1_g139140 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 4.9e-82 308.9 183 78.1
Hma1.2p1_0376F.1_g139150 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 4.9e-82 308.9 183 78.1
Mapoly0103s0062 Marchantia polymorpha HOM05D006263 ORTHO05D007549 2.0e-75 287.0 339 44.2
Pp3c17_20460 Physcomitrium patens HOM05D006263 ORTHO05D007549 3.5e-72 276.2 348 40.5
SMO367G0539 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 3.4e-67 259.6 339 41.0
FAN16G0439 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.6e-61 240.7 206 60.2
RhsimUnG0048700 Rhododendron simsii HOM05D006263 ORTHO05D007549 8.4e-50 201.8 181 59.7
FAN18G1683 Fragaria x ananassa HOM05D000349 ORTHO05D007549 6.0e-48 195.7 202 54.0
Hma1.2p1_0376F.1_g139120 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 6.0e-48 195.7 174 60.3
Pp3c2_1350 Physcomitrium patens HOM05D006263 ORTHO05D007549 2.4e-44 183.7 263 37.6
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 9.0e-44 181.8 188 53.7
FAN18G1526 Fragaria x ananassa HOM05D000349 ORTHO05D007549 1.3e-39 167.9 180 53.3
FAN24G0044 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.4e-36 157.9 216 44.0
TPR.G18346 Trifolium pratense HOM05D006263 ORTHO05D007549 7.6e-27 125.6 81 67.9
SMO275G0019 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 1.1e-22 111.7 129 41.1
SMO367G0580 Selaginella moellendorffii HOM05D006263 ORTHO05D378923 3.8e-18 96.7 107 42.1
FAN03G3217 Fragaria x ananassa HOM05D002676 ORTHO05D003194 6.0e-16 89.4 60 68.3
FAN11G1140 Fragaria x ananassa HOM05D002676 ORTHO05D003194 6.0e-16 89.4 60 68.3
FAN22G0360 Fragaria x ananassa HOM05D002676 ORTHO05D003194 6.0e-16 89.4 60 68.3
FAN22G1437 Fragaria x ananassa HOM05D002676 ORTHO05D007549 5.1e-15 86.3 60 66.7
FAN15G0659 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.5e-14 84.0 103 48.5
FAN25G1138 Fragaria x ananassa HOM05D012843 ORTHO05D017973 6.3e-13 79.3 75 54.7
FAN22G0951 Fragaria x ananassa HOM05D000005 ORTHO05D000294 1.8e-12 77.8 75 54.7
FAN12G3135 Fragaria x ananassa HOM05D000005 ORTHO05D000294 2.4e-12 77.4 75 53.3
FAN08G1181 Fragaria x ananassa HOM05D003914 ORTHO05D001189 4.1e-12 76.6 53 66.0
FAN27G3525 Fragaria x ananassa HOM05D003914 ORTHO05D001189 4.1e-12 76.6 53 66.0
Phvul.004G082000 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 2.2e-10 70.9 59 59.3
FAN09G2057 Fragaria x ananassa HOM05D000005 ORTHO05D000294 3.8e-10 70.1 59 59.3
FAN22G2156 Fragaria x ananassa HOM05D002676 ORTHO05D003194 6.1e-08 62.8 69 47.8
FAN19G1473 Fragaria x ananassa HOM05D000005 ORTHO05D000294 3.3e-06 57.0 49 57.1


User provided reference genes

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