Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 3.9e-48 194.9 99 100.0
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 8.0e-17 90.9 106 50.0
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 2.3e-16 89.4 106 49.1
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 4.0e-16 88.6 90 56.7
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 1.3e-14 83.6 94 52.1
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 3.7e-14 82.0 87 57.5
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 8.3e-14 80.9 90 51.1
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 8.3e-14 80.9 85 57.6
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.1e-13 80.5 90 52.2
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 4.1e-13 78.6 86 57.0
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 4.1e-13 78.6 100 51.0
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 4.1e-13 78.6 90 51.1
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 7.0e-13 77.8 87 50.6
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 7.0e-13 77.8 86 55.8
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 2.0e-12 76.3 88 53.4
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 2.7e-12 75.9 86 55.8
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 5.9e-12 74.7 101 45.5
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 5.9e-12 74.7 86 47.7
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 5.9e-12 74.7 98 50.0
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 5.9e-12 74.7 94 51.1
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 7.8e-12 74.3 87 49.4
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 7.8e-12 74.3 101 46.5
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 7.8e-12 74.3 100 45.0
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 1.0e-11 73.9 70 57.1
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 2.3e-11 72.8 94 45.7
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 2.3e-11 72.8 91 47.3
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 3.9e-11 72.0 106 47.2
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 5.0e-11 71.6 93 48.4
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 5.0e-11 71.6 90 52.2
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 6.6e-11 71.2 97 47.4
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 8.6e-11 70.9 101 47.5
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 8.6e-11 70.9 101 47.5
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 8.6e-11 70.9 79 54.4
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.1e-10 70.5 69 53.6
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.5e-10 70.1 90 48.9
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.5e-10 70.1 90 48.9
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.5e-10 70.1 92 43.5
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.9e-10 69.7 78 47.4
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 1.9e-10 69.7 70 54.3
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 1.9e-10 69.7 70 54.3
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 2.5e-10 69.3 87 48.3
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 2.5e-10 69.3 97 43.3
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.5e-10 69.3 92 48.9
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 3.3e-10 68.9 93 46.2
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 3.3e-10 68.9 73 50.7
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 3.3e-10 68.9 94 47.9
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 4.3e-10 68.6 73 50.7
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 5.6e-10 68.2 87 44.8
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 5.6e-10 68.2 83 48.2
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 7.3e-10 67.8 88 43.2
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 7.3e-10 67.8 65 56.9
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 7.3e-10 67.8 70 55.7
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 9.5e-10 67.4 91 45.1
QL02p091243 Quercus lobata HOM05D003969 ORTHO05D003125 1.2e-09 67.0 130 41.5
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 1.6e-09 66.6 75 49.3
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 2.1e-09 66.2 94 46.8
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 2.1e-09 66.2 84 51.2
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 2.1e-09 66.2 62 56.5
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.1e-09 66.2 91 45.1
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 2.8e-09 65.9 103 45.6
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 2.8e-09 65.9 103 45.6
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 2.8e-09 65.9 68 48.5
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 2.8e-09 65.9 92 43.5
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 3.6e-09 65.5 73 49.3
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.6e-09 65.5 82 48.8
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 3.6e-09 65.5 82 48.8
Manes.14G138428 Manihot esculenta HOM05D003969 ORTHO05D003125 3.6e-09 65.5 108 46.3
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 3.6e-09 65.5 107 43.0
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 4.7e-09 65.1 103 45.6
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 4.7e-09 65.1 71 52.1
Actinidia23308 Actinidia chinensis HOM05D003969 ORTHO05D003125 6.1e-09 64.7 64 57.8
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 6.1e-09 64.7 78 48.7
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 6.1e-09 64.7 86 47.7
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 6.1e-09 64.7 66 56.1
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.0e-08 63.9 82 47.6
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 1.0e-08 63.9 85 48.2
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 1.0e-08 63.9 65 50.8
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 1.4e-08 63.5 97 45.4
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.8e-08 63.2 93 44.1
Atru.chr7.265 Acer truncatum HOM05D003969 ORTHO05D003125 2.3e-08 62.8 71 52.1
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 2.3e-08 62.8 90 46.7
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 3.1e-08 62.4 90 46.7
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 3.1e-08 62.4 73 47.9
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 3.1e-08 62.4 67 52.2
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 3.1e-08 62.4 90 42.2
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 4.0e-08 62.0 92 44.6
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 4.0e-08 62.0 66 54.5
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 5.2e-08 61.6 70 50.0
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 5.2e-08 61.6 65 49.2
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 6.8e-08 61.2 98 42.9
MSTRG.26029 Avicennia marina HOM05D003969 ORTHO05D003125 6.8e-08 61.2 69 49.3
Gohir.A05G011500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.8e-08 61.2 83 41.0
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 6.8e-08 61.2 64 50.0
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 8.9e-08 60.8 90 45.6
BcaC07g37678 Brassica carinata HOM05D003969 ORTHO05D003125 8.9e-08 60.8 102 42.2
BolC8t48050H Brassica oleracea HOM05D003969 ORTHO05D003125 8.9e-08 60.8 102 42.2
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 8.9e-08 60.8 101 38.6
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 8.9e-08 60.8 74 48.6
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 8.9e-08 60.8 74 48.6
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 8.9e-08 60.8 71 52.1
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 8.9e-08 60.8 93 44.1
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 1.2e-07 60.5 66 54.5
A08p09570 Brassica napus HOM05D003969 ORTHO05D003125 1.2e-07 60.5 65 50.8
BraA08t32954Z Brassica rapa HOM05D003969 ORTHO05D003125 1.2e-07 60.5 65 50.8
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.5e-07 60.1 92 45.7
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 1.5e-07 60.1 77 48.1
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.5e-07 60.1 76 44.7
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.5e-07 60.1 78 47.4
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 3.4e-07 58.9 92 41.3
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 3.4e-07 58.9 109 41.3
FAN20G0523 Fragaria x ananassa HOM05D019695 ORTHO05D022679 3.4e-07 58.9 89 46.1
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 4.4e-07 58.5 88 44.3
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 4.4e-07 58.5 82 45.1
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 4.4e-07 58.5 82 45.1
FAN15G0756 Fragaria x ananassa HOM05D019695 ORTHO05D022679 4.4e-07 58.5 89 43.8
FAN24G2106 Fragaria x ananassa HOM05D019695 ORTHO05D022679 4.4e-07 58.5 89 43.8
Gohir.D05G012200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.4e-07 58.5 112 37.5
Gorai.009G012500 Gossypium raimondii HOM05D003969 ORTHO05D003125 4.4e-07 58.5 83 41.0
FvH4_2g28320 Fragaria vesca HOM05D019695 ORTHO05D022679 5.8e-07 58.2 73 46.6
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 5.8e-07 58.2 71 45.1
ATR0763G001 Amborella trichopoda HOM05D003969 ORTHO05D003125 7.5e-07 57.8 71 46.5
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 7.5e-07 57.8 58 55.2
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 7.5e-07 57.8 61 54.1
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 7.5e-07 57.8 82 43.9
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 7.5e-07 57.8 72 45.8
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 7.5e-07 57.8 82 46.3
Eucgr.C00437 Eucalyptus grandis HOM05D003969 ORTHO05D003125 9.8e-07 57.4 72 50.0
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 9.8e-07 57.4 70 47.1
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 9.8e-07 57.4 87 43.7
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 1.3e-06 57.0 114 39.5
Gohir.A07G030200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.3e-06 57.0 61 49.2
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 1.3e-06 57.0 69 50.7
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 1.7e-06 56.6 83 45.8
Prupe.1G486000 Prunus persica HOM05D019695 ORTHO05D022679 1.7e-06 56.6 71 52.1
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 2.2e-06 56.2 100 36.0
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 2.2e-06 56.2 95 36.8
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.2e-06 56.2 80 42.5
Gorai.009G060100 Gossypium raimondii HOM05D003969 ORTHO05D003125 2.2e-06 56.2 70 45.7
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 2.2e-06 56.2 66 45.5
Peaxi162Scf00315g00011 Petunia axillaris HOM05D003969 ORTHO05D003125 2.2e-06 56.2 92 40.2
PGR142G4289 Punica granatum HOM05D003969 ORTHO05D003125 2.2e-06 56.2 107 43.0
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 2.9e-06 55.8 81 42.0
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.9e-06 55.8 82 42.7
Eucgr.C01698 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.9e-06 55.8 82 41.5
Medtr1g012950 Medicago truncatula HOM05D013068 ORTHO05D003125 2.9e-06 55.8 59 54.2
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 2.9e-06 55.8 103 39.8
Sc23g0006550 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.9e-06 55.8 77 45.5
FAN27G0582 Fragaria x ananassa HOM05D019695 ORTHO05D022679 3.7e-06 55.5 89 42.7
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 4.9e-06 55.1 96 39.6
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.9e-06 55.1 80 40.0
Eucgr.C01694 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.9e-06 55.1 93 39.8
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.9e-06 55.1 80 41.2
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 4.9e-06 55.1 76 42.1
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 4.9e-06 55.1 68 44.1
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 6.4e-06 54.7 76 43.4
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.4e-06 54.7 80 41.2
arahy.Tifrunner.gnm1.ann1.75VKL2 Arachis hypogaea HOM05D013068 ORTHO05D003125 8.3e-06 54.3 49 55.1
arahy.Tifrunner.gnm1.ann1.NDRC00 Arachis hypogaea HOM05D013068 ORTHO05D003125 8.3e-06 54.3 49 55.1
BcaC03g13348 Brassica carinata HOM05D008824 ORTHO05D003125 8.3e-06 54.3 77 45.5
C02p04840 Brassica napus HOM05D008824 ORTHO05D003125 8.3e-06 54.3 77 45.5
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 8.3e-06 54.3 62 48.4


User provided reference genes

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