Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_19237 Corylus avellana HOM05D003067 ORTHO05D009378 1.0e-204 716.5 350 100.0
Cfa020848 Carpinus fangiana HOM05D003067 ORTHO05D007251 1.4e-153 546.6 339 82.6
QL02p092630 Quercus lobata HOM05D003067 ORTHO05D009378 6.8e-116 421.4 343 64.7
CiPaw.16G115000 Carya illinoinensis HOM05D003067 ORTHO05D009378 2.9e-114 416.0 326 64.4
Atru.chr7.146 Acer truncatum HOM05D003067 ORTHO05D009378 2.6e-91 339.7 317 54.3
RcHm_v2.0_Chr2g0085991 Rosa chinensis HOM05D003067 ORTHO05D009378 1.4e-89 334.0 323 54.2
Thecc.09G033900 Theobroma cacao HOM05D003067 ORTHO05D009378 4.2e-89 332.4 318 52.2
Ciclev10009097m.g Citrus clementina HOM05D003067 ORTHO05D009378 1.3e-87 327.4 329 51.7
Prupe.7G260000 Prunus persica HOM05D003067 ORTHO05D009378 7.3e-86 321.6 326 52.5
FvH4_1g01190 Fragaria vesca HOM05D003067 ORTHO05D009378 9.6e-86 321.2 323 51.7
Gohir.D07G030100 Gossypium hirsutum HOM05D003067 ORTHO05D009378 2.8e-85 319.7 318 52.2
Gohir.A07G026200 Gossypium hirsutum HOM05D003067 ORTHO05D009378 4.8e-85 318.9 318 52.2
FAN28G0267 Fragaria x ananassa HOM05D003067 ORTHO05D009378 8.1e-85 318.2 323 51.1
Dinv41400 Davidia involucrata HOM05D003067 ORTHO05D009378 1.1e-84 317.8 287 54.0
GSVIVG01003733001 Vitis vinifera HOM05D003067 ORTHO05D009378 9.0e-84 314.7 291 56.0
Medtr2g450220 Medicago truncatula HOM05D003067 ORTHO05D009378 1.2e-83 314.3 330 49.4
TWI34G0508 Tripterygium wilfordii HOM05D003067 ORTHO05D009378 1.2e-83 314.3 330 50.0
Nn2g12305 Nelumbo nucifera HOM05D003067 ORTHO05D009378 1.5e-83 313.9 330 52.7
Gorai.001G031300 Gossypium raimondii HOM05D003067 ORTHO05D009378 9.9e-83 311.2 319 51.4
Hma1.2p1_0028F.1_g017380 Hydrangea macrophylla HOM05D003067 ORTHO05D009378 2.3e-79 300.1 326 49.4
Potri.018G110300 Populus trichocarpa HOM05D003067 ORTHO05D009378 1.9e-78 297.0 330 47.9
CANSAT11G2322 Cannabis sativa HOM05D003067 ORTHO05D009378 2.1e-77 293.5 329 48.9
COL.COLO4_18774 Corchorus olitorius HOM05D003067 ORTHO05D009378 4.0e-76 289.3 279 53.8
Potri.006G187500 Populus trichocarpa HOM05D003067 ORTHO05D009378 7.6e-75 285.0 328 47.3
Eucgr.C00366 Eucalyptus grandis HOM05D003067 ORTHO05D009378 1.9e-73 280.4 331 46.5
PGR142G2789 Punica granatum HOM05D003067 ORTHO05D009378 1.1e-70 271.2 338 45.0
Actinidia38680 Actinidia chinensis HOM05D003067 ORTHO05D009378 5.3e-68 262.3 300 45.7
FAN23G1864 Fragaria x ananassa HOM05D003779 ORTHO05D002678 5.3e-68 262.3 219 57.5
ClCG02G017140 Citrullus lanatus HOM05D003067 ORTHO05D009378 3.4e-67 259.6 327 44.3
Aqoxy7G03467 Aquilegia oxysepala HOM05D003067 ORTHO05D009378 1.7e-66 257.3 334 43.4
MBI14_g05269_MAGBIO Magnolia biondii HOM05D003067 ORTHO05D009378 4.9e-66 255.8 293 48.5
CAN.G551.28 Capsicum annuum HOM05D003067 ORTHO05D009378 1.9e-65 253.8 327 41.9
Sabra18G0093300 Salix brachista HOM05D003067 ORTHO05D009378 3.2e-65 253.1 395 39.0
Oeu021253.1 Olea europaea HOM05D003067 ORTHO05D009378 1.2e-64 251.1 325 43.1
Duzib150G0133 Durio zibethinus HOM05D003067 ORTHO05D009378 3.5e-64 249.6 255 50.6
MELO3C004431.2 Cucumis melo HOM05D003067 ORTHO05D009378 7.9e-64 248.4 333 44.4
Nitab4.5_0001478g0120 Nicotiana tabacum HOM05D003067 ORTHO05D009378 6.7e-63 245.4 326 41.4
Manes.14G112000 Manihot esculenta HOM05D003067 ORTHO05D009378 4.3e-62 242.7 245 48.2
CsaV3_2G003640 Cucumis sativus L. HOM05D003067 ORTHO05D009378 5.7e-62 242.3 326 42.9
Lj6g0006451 Lotus japonicus HOM05D003067 ORTHO05D009378 5.7e-62 242.3 331 44.7
CDE06G1077 Ceratophyllum demersum HOM05D003067 ORTHO05D009378 1.5e-59 234.2 325 40.9
Cc06_g15260 Coffea canephora HOM05D003067 ORTHO05D009378 1.0e-58 231.5 320 41.6
Peaxi162Scf00108g00714 Petunia axillaris HOM05D003067 ORTHO05D009378 3.2e-57 226.5 333 41.4
MSTRG.6118 Avicennia marina HOM05D003067 ORTHO05D009378 2.7e-56 223.4 326 38.3
Thhalv10025917m.g Eutrema salsugineum HOM05D003067 ORTHO05D009378 7.9e-56 221.9 326 40.8
ATR1153G020 Amborella trichopoda HOM05D003067 ORTHO05D009378 2.3e-55 220.3 315 41.0
BcaNung03423 Brassica carinata HOM05D003067 ORTHO05D009378 3.3e-54 216.5 326 39.0
Rhsim03G0256100 Rhododendron simsii HOM05D003779 ORTHO05D002678 3.3e-54 216.5 330 40.6
HPP92_017493 Vanilla planifolia HOM05D003067 ORTHO05D009378 7.4e-54 215.3 322 41.0
Carub.0007s0954 Capsella rubella HOM05D003067 ORTHO05D009378 8.2e-53 211.8 327 40.1
HanXRQChr05g0133261 Helianthus annuus HOM05D003067 ORTHO05D009378 8.2e-53 211.8 322 40.7
Sp7g28870 Schrenkiella parvula HOM05D003067 ORTHO05D009378 1.1e-52 211.5 322 40.7
FAN19G0469 Fragaria x ananassa HOM05D003067 ORTHO05D009378 1.4e-52 211.1 184 57.1
Os06g0183700 Oryza sativa ssp. japonica HOM05D003067 ORTHO05D009378 3.1e-52 209.9 301 38.9
AL7G21080 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 5.3e-52 209.1 327 39.4
Solyc12g010230.2 Solanum lycopersicum HOM05D003067 ORTHO05D009378 5.3e-52 209.1 284 41.5
A01p07190 Brassica napus HOM05D003067 ORTHO05D009378 9.1e-52 208.4 326 37.4
Sopen12g005120 Solanum pennellii HOM05D003067 ORTHO05D009378 2.0e-51 207.2 285 41.8
C01p07950 Brassica napus HOM05D003067 ORTHO05D009378 1.0e-50 204.9 327 37.9
BolC1t00782H Brassica oleracea HOM05D003067 ORTHO05D009378 1.0e-50 204.9 327 37.9
BraA01t00670Z Brassica rapa HOM05D003067 ORTHO05D009378 2.2e-50 203.8 326 37.1
THA.LOC104803568 Tarenaya hassleriana HOM05D003067 ORTHO05D009378 2.9e-50 203.4 325 37.8
BcaC09g51887 Brassica carinata HOM05D003067 ORTHO05D009378 3.8e-50 203.0 327 37.9
Nitab4.5_0002315g0060 Nicotiana tabacum HOM05D003067 ORTHO05D009378 9.4e-49 198.4 274 40.1
Zm00001eb374750 Zea mays HOM05D003067 ORTHO05D009378 3.3e-46 189.9 328 37.5
Migut.J01329 Erythranthe guttata HOM05D003067 ORTHO05D009378 1.2e-43 181.4 328 34.5
AT4G30993 Arabidopsis thaliana HOM05D003067 ORTHO05D009378 2.0e-43 180.6 222 45.5
Oeu043497.1 Olea europaea HOM05D003067 ORTHO05D009378 3.5e-43 179.9 189 50.3
Oeu043496.1 Olea europaea HOM05D003067 ORTHO05D009378 7.7e-43 178.7 189 49.2
Cpa.g.sc46.125 Carica papaya HOM05D003067 ORTHO05D009378 5.0e-42 176.0 212 46.2
Lsat_1_v5_gn_8_59821 Lactuca sativa HOM05D003067 ORTHO05D009378 9.4e-41 171.8 324 35.8
MD02G1010100 Malus domestica HOM05D003067 ORTHO05D009378 6.1e-40 169.1 220 43.6
SGA_v2.0_scaffold265G46124 Striga asiatica HOM05D003067 ORTHO05D009378 3.0e-39 166.8 313 33.9
SalBow1G0452 Salvia bowleyana HOM05D003067 ORTHO05D009378 2.2e-37 160.6 324 31.5
CARHR238890 Cardamine hirsuta HOM05D003067 ORTHO05D009378 3.1e-36 156.8 184 47.3
vmacro06093 Vaccinium macrocarpon HOM05D003067 ORTHO05D009378 1.0e-34 151.8 294 36.1
DCAR_014819 Daucus carota HOM05D003067 ORTHO05D009378 2.9e-34 150.2 279 33.7
Glyma.15G205500 Glycine max HOM05D003067 ORTHO05D009378 3.6e-32 143.3 252 37.3
PGSC0003DMG400007894 Solanum tuberosum HOM05D003067 ORTHO05D009378 1.3e-29 134.8 189 43.9
MD02G1010000 Malus domestica HOM05D003067 ORTHO05D009378 1.5e-22 111.3 105 55.2
Nitab4.5_0001478g0160 Nicotiana tabacum HOM05D003067 ORTHO05D009378 1.3e-18 98.2 181 32.6
CSS0014498 Camellia sinensis var. sinensis HOM05D003067 ORTHO05D009378 2.3e-18 97.4 174 33.3
SGA_v2.0_scaffold214G42289 Striga asiatica HOM05D003067 ORTHO05D009378 1.2e-16 91.7 225 28.4
GSVIVG01003739001 Vitis vinifera HOM05D003067 ORTHO05D009378 3.4e-14 83.6 72 61.1
SGA_v2.0_scaffold113G31772 Striga asiatica HOM05D003067 ORTHO05D009378 9.8e-14 82.0 188 30.9
Mapoly0029s0107 Marchantia polymorpha HOM05D001297 ORTHO05D001135 4.9e-13 79.7 247 24.7
Aa31LG2G19330 Aethionema arabicum HOM05D003067 ORTHO05D009378 4.1e-12 76.6 116 39.7
AL2G22600 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 4.1e-12 76.6 95 42.1
Nitab4.5_0000525g0300 Nicotiana tabacum HOM05D003067 ORTHO05D009378 5.4e-12 76.3 208 27.9
AL6G46700 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 1.2e-11 75.1 95 42.1
Nitab4.5_0008862g0010 Nicotiana tabacum HOM05D003067 ORTHO05D009378 1.1e-09 68.6 149 28.2


User provided reference genes

Program Settings