Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_19080 Corylus avellana HOM05D003771 ORTHO05D004396 0.0e+00 4147.0 2142 100.0
QL11p007303 Quercus lobata HOM05D003771 ORTHO05D004396 0.0e+00 1691.0 1126 81.3
CiPaw.15G162500 Carya illinoinensis HOM05D003771 ORTHO05D004396 0.0e+00 1678.3 1109 81.4
CANSAT64G2070 Cannabis sativa HOM05D003771 ORTHO05D004396 0.0e+00 1602.8 1114 77.5
Glyma.05G220300 Glycine max HOM05D003771 ORTHO05D004396 0.0e+00 1592.4 1109 77.1
RcHm_v2.0_Chr4g0384941 Rosa chinensis HOM05D003771 ORTHO05D004396 0.0e+00 1592.0 1127 76.5
MD04G1002300 Malus domestica HOM05D003771 ORTHO05D004396 0.0e+00 1591.2 1131 76.3
FvH4_4g00210 Fragaria vesca HOM05D003771 ORTHO05D004396 0.0e+00 1590.9 1124 76.9
Dinv12623 Davidia involucrata HOM05D003771 ORTHO05D004396 0.0e+00 1588.9 1123 76.7
Phvul.002G302000 Phaseolus vulgaris HOM05D003771 ORTHO05D004396 0.0e+00 1588.2 1109 76.4
TWI34G0561 Tripterygium wilfordii HOM05D003771 ORTHO05D004396 0.0e+00 1587.0 1113 76.4
FAN17G2138 Fragaria x ananassa HOM05D003771 ORTHO05D004396 0.0e+00 1586.2 1120 76.6
Lj4g0002190 Lotus japonicus HOM05D003771 ORTHO05D004396 0.0e+00 1582.8 1109 76.2
Glyma.08G026700 Glycine max HOM05D003771 ORTHO05D004396 0.0e+00 1581.6 1109 76.7
ClCG04G000570 Citrullus lanatus HOM05D003771 ORTHO05D004396 0.0e+00 1576.6 1117 76.5
GSVIVG01022289001 Vitis vinifera HOM05D003771 ORTHO05D004396 0.0e+00 1576.6 1123 75.9
FAN22G1465 Fragaria x ananassa HOM05D003771 ORTHO05D004396 0.0e+00 1575.8 1142 75.4
MELO3C009070.2 Cucumis melo HOM05D003771 ORTHO05D004396 0.0e+00 1572.0 1117 76.4
VMungo0251G3699 Vigna mungo HOM05D003771 ORTHO05D004396 0.0e+00 1571.2 1109 75.8
PGR044G2258 Punica granatum HOM05D003771 ORTHO05D004396 0.0e+00 1570.1 1126 75.3
CsaV3_4G031470 Cucumis sativus L. HOM05D003771 ORTHO05D004396 0.0e+00 1567.4 1117 76.0
Ca_17443_v3 Cicer arietinum L. HOM05D003771 ORTHO05D004396 0.0e+00 1562.4 1110 76.4
Eucgr.E04317 Eucalyptus grandis HOM05D003771 ORTHO05D004396 0.0e+00 1562.0 1124 75.0
Sed0018603 Sechium edule HOM05D003771 ORTHO05D004396 0.0e+00 1561.6 1118 76.1
Manes.02G223900 Manihot esculenta HOM05D003771 ORTHO05D004396 0.0e+00 1560.8 1133 75.0
Thecc.09G205400 Theobroma cacao HOM05D003771 ORTHO05D004396 0.0e+00 1559.7 1114 75.7
Potri.018G149400 Populus trichocarpa HOM05D003771 ORTHO05D004396 0.0e+00 1559.3 1133 74.2
MD15G1427900 Malus domestica HOM05D003771 ORTHO05D004396 0.0e+00 1558.9 1116 75.9
COL.COLO4_37655 Corchorus olitorius HOM05D003771 ORTHO05D004396 0.0e+00 1557.7 1118 75.8
Atru.chr12.1314 Acer truncatum HOM05D003771 ORTHO05D004396 0.0e+00 1557.0 1142 74.3
TAR383G0820 Trochodendron aralioides HOM05D003771 ORTHO05D004396 0.0e+00 1557.0 1138 74.3
Ciclev10007279m.g Citrus clementina HOM05D003771 ORTHO05D004396 0.0e+00 1548.1 1123 75.2
Nn1g00173 Nelumbo nucifera HOM05D003771 ORTHO05D004396 0.0e+00 1548.1 1127 74.4
CSS0004980 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 0.0e+00 1547.3 1126 74.3
Actinidia02465 Actinidia chinensis HOM05D003771 ORTHO05D004396 0.0e+00 1546.2 1125 74.4
Lalb_Chr05g0223831 Lupinus albus HOM05D003771 ORTHO05D004396 0.0e+00 1546.2 1109 75.0
Cc06_g23760 Coffea canephora HOM05D003771 ORTHO05D004396 0.0e+00 1545.8 1124 74.7
Medtr8g100105 Medicago truncatula HOM05D003771 ORTHO05D004396 0.0e+00 1544.3 1111 75.3
Nn3g19428 Nelumbo nucifera HOM05D003771 ORTHO05D004396 0.0e+00 1543.9 1127 73.8
Psat7g020760 Pisum sativum HOM05D003771 ORTHO05D004396 0.0e+00 1540.8 1131 74.5
Gorai.009G000200 Gossypium raimondii HOM05D003771 ORTHO05D004396 0.0e+00 1535.4 1121 74.6
Gohir.D05G000400 Gossypium hirsutum HOM05D003771 ORTHO05D004396 0.0e+00 1533.9 1121 74.5
Gohir.A05G000200 Gossypium hirsutum HOM05D003771 ORTHO05D004396 0.0e+00 1531.5 1121 74.4
Sabra18G0126200 Salix brachista HOM05D003771 ORTHO05D004396 0.0e+00 1531.5 1203 70.5
DCAR_020453 Daucus carota HOM05D003771 ORTHO05D004396 0.0e+00 1524.6 1123 73.6
Sc06g0002410 Simmondsia chinensis HOM05D003771 ORTHO05D004396 0.0e+00 1522.3 1126 73.7
Duzib168G1435 Durio zibethinus HOM05D003771 ORTHO05D004396 0.0e+00 1518.8 1124 73.8
Nitab4.5_0000019g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 0.0e+00 1517.7 1120 73.8
Oeu008632.1 Olea europaea HOM05D003771 ORTHO05D004396 0.0e+00 1515.7 1127 73.5
PSO063G0153 Papaver somniferum HOM05D003771 ORTHO05D004396 0.0e+00 1513.0 1128 73.4
Cpa.g.sc91.64 Carica papaya HOM05D003771 ORTHO05D004396 0.0e+00 1508.8 1128 72.5
Aqoxy3G04250 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 0.0e+00 1507.3 1129 72.8
PSO782G3876 Papaver somniferum HOM05D003771 ORTHO05D004396 0.0e+00 1506.9 1128 73.2
THA.LOC104808936 Tarenaya hassleriana HOM05D003771 ORTHO05D004396 0.0e+00 1497.3 1134 72.8
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 0.0e+00 1496.1 1145 70.4
Sopen05g020060 Solanum pennellii HOM05D003771 ORTHO05D004396 0.0e+00 1492.6 1120 72.6
Migut.L01925 Erythranthe guttata HOM05D003771 ORTHO05D004396 0.0e+00 1490.3 1136 72.3
Carub.0013s0005 Capsella rubella HOM05D003771 ORTHO05D004396 0.0e+00 1487.2 1123 72.2
CAN.G587.52 Capsicum annuum HOM05D003771 ORTHO05D004396 0.0e+00 1485.3 1063 75.0
Thhalv10012482m.g Eutrema salsugineum HOM05D003771 ORTHO05D004396 0.0e+00 1484.2 1123 72.0
Lj5A798G49 Lonicera japonica HOM05D003771 ORTHO05D004396 0.0e+00 1483.0 1080 74.0
BraA03t10897Z Brassica rapa HOM05D003771 ORTHO05D004396 0.0e+00 1482.2 1122 72.1
A03p16060 Brassica napus HOM05D003771 ORTHO05D004396 0.0e+00 1481.8 1122 72.1
AL3G44140 Arabidopsis lyrata HOM05D003771 ORTHO05D004396 0.0e+00 1481.5 1123 72.0
Sp6g13880 Schrenkiella parvula HOM05D003771 ORTHO05D004396 0.0e+00 1481.5 1123 72.0
BcaC01g06134 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1479.9 1121 72.1
BcaB01g04159 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1479.2 1120 72.1
Prupe.7G042600 Prunus persica HOM05D003771 ORTHO05D004396 0.0e+00 1479.2 1128 72.8
MSTRG.26513 Avicennia marina HOM05D003771 ORTHO05D004396 0.0e+00 1477.6 1140 71.4
SalBow5G2520 Salvia bowleyana HOM05D003771 ORTHO05D004396 0.0e+00 1477.6 1150 70.5
arahy.Tifrunner.gnm1.ann1.XKPK2Z Arachis hypogaea HOM05D003771 ORTHO05D004396 0.0e+00 1475.3 1133 72.1
BcaB08g35516 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1475.3 1120 71.7
BcaC04g20648 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1474.9 1125 71.4
SGA_v2.0_scaffold21G09599 Striga asiatica HOM05D003771 ORTHO05D004396 0.0e+00 1474.5 1132 71.6
CARHR104050 Cardamine hirsuta HOM05D003771 ORTHO05D004396 0.0e+00 1473.8 1123 71.9
AT2G07360 Arabidopsis thaliana HOM05D003771 ORTHO05D004396 0.0e+00 1473.0 1125 71.8
C03p18900 Brassica napus HOM05D003771 ORTHO05D004396 0.0e+00 1470.3 1122 71.8
arahy.Tifrunner.gnm1.ann1.TH49EC Arachis hypogaea HOM05D003771 ORTHO05D004396 0.0e+00 1463.7 1156 70.8
BolC3t14282H Brassica oleracea HOM05D003771 ORTHO05D004396 0.0e+00 1463.0 1143 70.7
TPR.G25458 Trifolium pratense HOM05D003771 ORTHO05D004396 0.0e+00 1459.9 971 80.0
Aa31sc328G10 Aethionema arabicum HOM05D003771 ORTHO05D004396 0.0e+00 1456.8 1165 69.3
ATR0626G390 Amborella trichopoda HOM05D003771 ORTHO05D004396 0.0e+00 1447.6 1133 70.2
Lsat_1_v5_gn_1_6680 Lactuca sativa HOM05D003771 ORTHO05D004396 0.0e+00 1409.0 1114 69.6
HanXRQChr02g0040541 Helianthus annuus HOM05D003771 ORTHO05D004396 0.0e+00 1407.5 1119 69.0
ECA233G1083 Erigeron canadensis HOM05D003771 ORTHO05D004396 0.0e+00 1400.2 1118 69.0
Lju50C19G3 Lonicera japonica HOM05D003771 ORTHO05D004396 0.0e+00 1395.9 1095 70.0
AUR62014286 Chenopodium quinoa HOM05D003771 ORTHO05D004396 0.0e+00 1391.7 1201 65.1
A10p09550 Brassica napus HOM05D003771 ORTHO05D004396 0.0e+00 1376.3 1126 68.0
Zm00001eb011800 Zea mays HOM05D003771 ORTHO05D004396 0.0e+00 1370.1 1121 68.0
SEGI_40037 Sequoiadendron giganteum HOM05D003771 ORTHO05D004396 0.0e+00 1338.9 1133 65.4
AUR62034148 Chenopodium quinoa HOM05D003771 ORTHO05D004396 0.0e+00 1312.4 1138 64.8
Os03g0265700 Oryza sativa ssp. japonica HOM05D003771 ORTHO05D004396 0.0e+00 1287.7 928 73.3
CDE07G1201 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 0.0e+00 1241.9 950 71.9
FAN12G2055 Fragaria x ananassa HOM05D003771 ORTHO05D004396 0.0e+00 1241.9 878 77.8
Hund03218 Selenicereus undatus HOM05D003771 ORTHO05D004396 0.0e+00 1228.4 853 75.4
Rhsim01G0106700 Rhododendron simsii HOM05D003771 ORTHO05D004396 0.0e+00 1221.5 936 71.6
CSS0043776 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 0.0e+00 1161.7 947 67.5
AagrBONN_evm.TU.Sc2ySwM_228.3008 Anthoceros agrestis HOM05D003771 ORTHO05D004396 0.0e+00 1080.5 1086 55.2
HPP92_018040 Vanilla planifolia HOM05D003771 ORTHO05D004396 0.0e+00 1078.9 751 75.4
Mapoly0015s0202 Marchantia polymorpha HOM05D003771 ORTHO05D004396 2.9e-310 1069.7 1070 55.5
Pp3c15_18470 Physcomitrium patens HOM05D003771 ORTHO05D004396 8.5e-310 1068.1 1141 53.5
EL10Ac4g08749 Beta vulgaris HOM05D003771 ORTHO05D004396 7.0e-304 1048.5 735 75.2
Peaxi162Scf00322g01517 Petunia axillaris HOM05D003771 ORTHO05D004396 1.2e-295 1021.1 707 77.1
SMO367G0435 Selaginella moellendorffii HOM05D003771 ORTHO05D004396 1.5e-285 987.6 964 57.1
Hund19352 Selenicereus undatus HOM05D003771 ORTHO05D004396 2.5e-285 986.9 724 72.9
vmacro20748 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 2.6e-242 844.0 591 76.3
C09p41070 Brassica napus HOM05D003771 ORTHO05D004396 4.6e-239 833.2 588 75.2
HanXRQChr05g0138991 Helianthus annuus HOM05D003771 ORTHO05D004396 1.7e-217 761.5 661 64.6
Lsat_1_v5_gn_8_69981 Lactuca sativa HOM05D003771 ORTHO05D004396 3.2e-216 757.3 637 66.4
MBI14_g32940_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D004396 2.3e-214 751.1 603 69.2
Aqoxy3G02691 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 1.6e-199 701.8 475 77.1
unitig_899.g15422 Utricularia gibba HOM05D003771 ORTHO05D004396 2.6e-189 667.9 533 68.5
AagrBONN_evm.TU.Sc2ySwM_369.331 Anthoceros agrestis HOM05D003771 ORTHO05D004396 3.3e-181 641.0 559 60.5
BolC9t56986H Brassica oleracea HOM05D003771 ORTHO05D004396 3.1e-179 634.4 559 64.9
BraA10t43030Z Brassica rapa HOM05D003771 ORTHO05D004396 5.3e-179 633.6 500 69.8
MD07G1055500 Malus domestica HOM05D003771 ORTHO05D004396 1.5e-173 615.5 457 73.7
Nitab4.5_0006114g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 1.9e-168 598.6 422 75.1
C09p41060 Brassica napus HOM05D003771 ORTHO05D004396 3.5e-162 577.8 491 66.4
Aqoxy3G02692 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 8.1e-143 513.5 437 67.5
HanXRQChr05g0138111 Helianthus annuus HOM05D003771 ORTHO05D004396 1.2e-125 456.4 393 63.1
AagrBONN_evm.TU.Sc2ySwM_228.2998 Anthoceros agrestis HOM05D003771 ORTHO05D004396 5.3e-118 431.0 288 73.3
RcHm_v2.0_Chr4g0384821 Rosa chinensis HOM05D003771 ORTHO05D004396 3.2e-107 395.2 220 89.1
vmacro20746 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 9.0e-102 377.1 352 63.4
HPP92_018039 Vanilla planifolia HOM05D003771 ORTHO05D004396 3.2e-99 368.6 387 58.7
Zm00001eb307240 Zea mays HOM05D003771 ORTHO05D004396 2.5e-96 359.0 207 86.0
Nitab4.5_0006114g0020 Nicotiana tabacum HOM05D003771 ORTHO05D004396 3.2e-91 342.0 338 60.1
FAN12G3555 Fragaria x ananassa HOM05D003771 ORTHO05D004396 4.2e-91 341.7 270 67.8
AagrBONN_evm.TU.Sc2ySwM_228.2996 Anthoceros agrestis HOM05D003771 ORTHO05D004396 3.4e-85 322.0 386 50.5
AagrBONN_evm.TU.Sc2ySwM_369.330 Anthoceros agrestis HOM05D003771 ORTHO05D004396 3.4e-85 322.0 386 50.5
unitig_899.g15421 Utricularia gibba HOM05D003771 ORTHO05D004396 5.3e-78 298.1 237 67.5
vmacro20747 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 4.7e-74 285.0 308 55.8
unitig_899.g15420 Utricularia gibba HOM05D003771 ORTHO05D004396 2.5e-67 262.7 265 58.9
Solyc05g025750.3 Solanum lycopersicum HOM05D003771 ORTHO05D004396 1.2e-64 253.8 266 58.3
Peaxi162Scf00322g01516 Petunia axillaris HOM05D003771 ORTHO05D004396 2.8e-63 249.2 269 57.2
Zm00001eb154330 Zea mays HOM05D003771 ORTHO05D004396 1.8e-62 246.5 142 88.0
arahy.Tifrunner.gnm1.ann1.Q9DYE1 Arachis hypogaea HOM05D003771 ORTHO05D004396 6.3e-55 221.5 119 88.2
arahy.Tifrunner.gnm1.ann1.523GVR Arachis hypogaea HOM05D003771 ORTHO05D004396 8.3e-55 221.1 122 88.5
Oeu036958.1 Olea europaea HOM05D003771 ORTHO05D004396 2.9e-52 212.6 149 73.2
Lsat_1_v5_gn_8_70001 Lactuca sativa HOM05D003771 ORTHO05D004396 2.6e-48 199.5 259 49.4
CBR_g10825 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-47 197.2 229 48.0
Psat6g005640 Pisum sativum HOM05D003771 ORTHO05D004396 3.5e-45 189.1 136 72.1
MD07G1055300 Malus domestica HOM05D003771 ORTHO05D004396 3.8e-44 185.7 299 41.8
AagrBONN_evm.TU.Sc2ySwM_228.2997 Anthoceros agrestis HOM05D003771 ORTHO05D004396 5.0e-44 185.3 174 55.2
TAR633G1498 Trochodendron aralioides HOM05D003771 ORTHO05D004396 2.0e-40 173.3 157 65.0
COL.COLO4_38524 Corchorus olitorius HOM05D003771 ORTHO05D004396 1.7e-39 170.2 112 78.6
arahy.Tifrunner.gnm1.ann1.F6FNE6 Arachis hypogaea HOM05D003771 ORTHO05D004396 6.0e-37 161.8 90 87.8
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 1.7e-36 160.2 157 61.8
Oeu036959.1 Olea europaea HOM05D003771 ORTHO05D004396 1.9e-35 156.8 137 67.2
CBR_g10827 Chara braunii HOM05D003771 ORTHO05D004396 1.8e-33 150.2 404 30.2
Psat0s1568g0040 Pisum sativum HOM05D003771 ORTHO05D004396 1.5e-32 147.1 90 84.4
RcHm_v2.0_Chr4g0384831 Rosa chinensis HOM05D003771 ORTHO05D004396 1.7e-28 133.7 73 89.0
VMungo0331G1237 Vigna mungo HOM05D003771 ORTHO05D004396 5.0e-28 132.1 74 86.5
TPR.G14800 Trifolium pratense HOM05D003771 ORTHO05D004396 1.5e-27 130.6 75 88.0
Lsat_1_v5_gn_5_155680 Lactuca sativa HOM05D003771 ORTHO05D004396 5.6e-27 128.6 120 61.7
VMungo1209G0002 Vigna mungo HOM05D003771 ORTHO05D004396 6.4e-23 115.2 91 69.2
MCO15G147 Micromonas commoda HOM05D003771 ORTHO05D004396 2.1e-21 110.2 413 27.4
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 5.6e-19 102.1 76 71.1
Lsat_1_v5_gn_4_142760 Lactuca sativa HOM05D003771 ORTHO05D012343 2.8e-18 99.8 143 45.5
Psat3g071280 Pisum sativum HOM05D000062 ORTHO05D004396 3.6e-18 99.4 91 62.6
VMungo0331G1533 Vigna mungo HOM05D003771 ORTHO05D004396 3.6e-18 99.4 76 68.4
Psat0ss6263g0280 Pisum sativum HOM05D041104 ORTHO05D004396 4.0e-17 95.9 89 62.9
Lsat_1_v5_gn_7_78841 Lactuca sativa HOM05D003771 ORTHO05D004396 2.6e-16 93.2 169 40.8
Psat5g077000 Pisum sativum HOM05D000062 ORTHO05D004396 2.6e-16 93.2 91 59.3
MBI05_g48085_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D004396 6.4e-15 88.6 67 67.2
Cre08.g384864 Chlamydomonas reinhardtii HOM05D003771 ORTHO05D004396 9.2e-14 84.7 164 32.9
PSO782G3302 Papaver somniferum HOM05D003771 ORTHO05D004396 1.2e-13 84.3 74 62.2
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 2.3e-12 80.1 213 32.4
MBI14_g31102_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D012924 4.3e-11 75.9 55 67.3
MD07G1055400 Malus domestica HOM05D003771 ORTHO05D004396 5.6e-11 75.5 41 92.7
arahy.Tifrunner.gnm1.ann1.ACA5RJ Arachis hypogaea HOM05D003771 ORTHO05D004396 6.2e-10 72.0 116 40.5
CDE06G2293 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 1.8e-09 70.5 88 56.8
Psat0s9825g0040 Pisum sativum HOM05D011383 ORTHO05D004396 1.4e-06 60.8 59 57.6
Psat2g096160 Pisum sativum HOM05D000041 ORTHO05D000061 3.2e-06 59.7 40 80.0
Psat2g096240 Pisum sativum HOM05D000041 ORTHO05D000061 3.2e-06 59.7 40 80.0
MBI05_g23486_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 5.4e-06 58.9 47 66.0


User provided reference genes

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