Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 2643.6 1362 100.0
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1507.7 1355 65.2
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1338.6 1354 57.9
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1315.8 1352 56.7
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1314.7 1340 56.6
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1310.0 1347 56.6
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1306.2 1826 46.8
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1302.0 1348 57.6
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1299.6 1373 55.6
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1295.0 1344 57.1
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1289.6 1353 56.6
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1286.6 1355 56.2
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1285.0 1352 56.4
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1281.2 1345 55.4
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1278.5 1449 52.8
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1278.1 1354 56.4
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1275.8 1349 55.4
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1273.8 1356 56.3
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1273.5 1354 56.2
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1265.0 1346 55.3
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1258.0 1350 54.4
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1256.9 1341 54.5
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1255.0 1344 54.5
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1249.6 1360 54.5
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1248.8 1334 55.2
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1246.1 1347 54.6
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1242.6 1339 55.1
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1239.6 1357 53.6
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1234.9 1349 54.6
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1234.6 1340 54.7
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1231.1 1337 55.2
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1229.2 1379 53.9
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1228.0 1346 54.7
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1226.5 1346 53.7
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1222.2 1348 54.2
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1219.9 1348 54.1
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1213.0 1332 54.1
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1212.6 1342 53.9
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1206.4 1345 53.5
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1199.1 1347 53.2
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1198.7 1343 54.2
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1197.2 1226 55.1
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1191.4 1348 52.7
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1173.7 1226 54.7
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1159.1 1299 52.6
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1157.1 1347 51.7
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1151.0 1351 51.4
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1147.5 1356 51.4
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1142.1 1412 48.9
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1139.4 1352 50.3
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1131.7 1352 51.2
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1125.5 1342 49.8
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1122.5 1333 50.3
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1121.7 1343 49.7
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1118.6 1359 50.8
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1110.1 1270 53.1
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1099.0 1212 50.5
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1094.0 1370 48.0
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1087.0 1326 50.2
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1086.2 1339 48.2
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1079.3 1333 48.7
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1076.2 1351 48.7
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 5.4e-310 1068.1 1337 49.3
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 5.4e-310 1068.1 1337 49.3
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 2.0e-309 1066.2 1349 48.3
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 7.8e-309 1064.3 1331 49.7
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 1.7e-308 1063.1 1338 49.8
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 5.0e-308 1061.6 1388 47.6
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 6.6e-308 1061.2 1332 49.1
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 5.6e-307 1058.1 1333 48.6
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 1.1e-305 1053.9 1133 53.4
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 5.8e-304 1048.1 1335 48.2
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 2.1e-298 1029.6 1353 46.4
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 5.8e-296 1021.5 1335 47.7
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 2.9e-295 1019.2 1346 46.8
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 1.0e-292 1010.7 1326 47.8
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 1.9e-291 1006.5 1180 50.3
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 1.9e-286 989.9 1337 46.5
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 2.4e-286 989.6 1301 46.9
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 2.6e-280 969.5 1314 45.6
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 3.4e-280 969.1 1174 50.1
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 1.0e-276 957.6 1344 44.9
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 4.5e-264 915.6 1343 42.1
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 4.6e-261 905.6 1339 44.1
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 7.9e-261 904.8 1402 41.6
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 8.2e-258 894.8 1050 50.5
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 5.3e-241 839.0 910 55.6
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 9.4e-230 801.6 1334 40.5
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 2.3e-215 753.8 1357 38.0
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 9.8e-211 738.4 903 48.7
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 2.4e-209 733.8 745 56.4
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 4.1e-209 733.0 737 56.6
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 7.3e-206 722.2 916 47.7
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 2.0e-195 687.6 1049 42.6
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 7.3e-190 669.1 870 48.7
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 7.6e-187 659.1 489 69.1
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 1.7e-183 647.9 755 50.9
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 4.3e-182 643.3 822 47.4
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 6.9e-172 609.4 1227 35.0
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 1.5e-163 581.6 1162 34.5
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 7.1e-153 546.2 1375 33.2
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 6.7e-151 539.7 1313 32.7
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 1.7e-146 525.0 1361 32.8
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 4.1e-124 450.7 1352 28.6
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 1.3e-114 419.1 431 56.1
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 5.7e-110 403.7 413 59.8
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 1.2e-46 193.4 209 50.2
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 2.7e-43 182.2 115 73.9
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 3.8e-37 161.8 354 31.9
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 1.1e-28 133.7 499 25.7
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 7.4e-17 94.4 113 49.6
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 6.3e-16 91.3 81 59.3
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 7.7e-14 84.3 71 62.0
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 6.5e-13 81.3 61 65.6
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 4.2e-12 78.6 85 47.1
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 2.8e-08 65.9 40 70.0
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 4.8e-08 65.1 47 63.8
Cpa.g.sc7.124 Carica papaya HOM05D006302 ORTHO05D007960 1.1e-07 63.9 166 44.0
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 7.7e-06 57.8 37 67.6
SGA_v2.0_scaffold100G29654 Striga asiatica HOM05D006302 ORTHO05D007960 7.7e-06 57.8 35 74.3


User provided reference genes

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