Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_18919 Corylus avellana HOM05D001822 ORTHO05D001744 4.3e-49 197.6 94 100.0
Cfa020637 Carpinus fangiana HOM05D000413 ORTHO05D000292 3.4e-14 81.6 40 97.5
CSS0046956 Camellia sinensis var. sinensis HOM05D001822 ORTHO05D001744 4.5e-14 81.3 40 95.0
CiPaw.15G147600 Carya illinoinensis HOM05D001822 ORTHO05D001744 7.7e-14 80.5 43 88.4
Hma1.2p1_0471F.1_g159390 Hydrangea macrophylla HOM05D001822 ORTHO05D001744 2.2e-13 79.0 40 90.0
CiPaw.16G097600 Carya illinoinensis HOM05D001822 ORTHO05D001744 2.9e-13 78.6 40 92.5
COL.COLO4_20598 Corchorus olitorius HOM05D001822 ORTHO05D001744 2.9e-13 78.6 40 82.5
TAR629G1142 Trochodendron aralioides HOM05D001822 ORTHO05D001744 2.9e-13 78.6 40 85.0
vmacro17770 Vaccinium macrocarpon HOM05D001822 ORTHO05D001744 2.9e-13 78.6 40 90.0
Actinidia09061 Actinidia chinensis HOM05D001822 ORTHO05D001744 3.8e-13 78.2 40 87.5
Cc00_g18050 Coffea canephora HOM05D001822 ORTHO05D001744 3.8e-13 78.2 40 82.5
Cc04_g09320 Coffea canephora HOM05D001822 ORTHO05D001744 3.8e-13 78.2 40 82.5
Manes.06G002500 Manihot esculenta HOM05D001822 ORTHO05D001744 6.5e-13 77.4 40 85.0
Potri.015G030801 Populus trichocarpa HOM05D001822 ORTHO05D001744 6.5e-13 77.4 40 87.5
PGR083G0520 Punica granatum HOM05D001822 ORTHO05D001744 6.5e-13 77.4 40 85.0
MSTRG.4630 Avicennia marina HOM05D001822 ORTHO05D001744 8.5e-13 77.0 40 87.5
Dinv09082 Davidia involucrata HOM05D001822 ORTHO05D001744 8.5e-13 77.0 40 85.0
Gohir.A03G091100 Gossypium hirsutum HOM05D001822 ORTHO05D001744 8.5e-13 77.0 40 82.5
Gorai.005G134500 Gossypium raimondii HOM05D001822 ORTHO05D001744 8.5e-13 77.0 40 82.5
Lsat_1_v5_gn_2_17460 Lactuca sativa HOM05D001822 ORTHO05D001744 8.5e-13 77.0 40 80.0
Solyc06g072440.3 Solanum lycopersicum HOM05D001822 ORTHO05D001744 1.1e-12 76.6 40 82.5
MELO3C002151.2 Cucumis melo HOM05D001822 ORTHO05D001744 1.4e-12 76.3 40 82.5
CsaV3_1G007350 Cucumis sativus L. HOM05D001822 ORTHO05D001744 1.4e-12 76.3 40 85.0
Sopen06g028810 Solanum pennellii HOM05D001822 ORTHO05D001744 1.4e-12 76.3 40 82.5
Duzib068G0370 Durio zibethinus HOM05D001822 ORTHO05D001744 1.9e-12 75.9 40 80.0
HanXRQChr17g0556071 Helianthus annuus HOM05D001822 ORTHO05D001744 1.9e-12 75.9 40 80.0
Manes.14G172800 Manihot esculenta HOM05D001822 ORTHO05D001744 1.9e-12 75.9 40 82.5
Sabra12G0029900 Salix brachista HOM05D001822 ORTHO05D001744 1.9e-12 75.9 40 85.0
Thecc.03G062800 Theobroma cacao HOM05D001822 ORTHO05D001744 1.9e-12 75.9 40 82.5
Duzib084G1136 Durio zibethinus HOM05D001822 ORTHO05D001744 2.5e-12 75.5 40 82.5
FvH4_5g17720 Fragaria vesca HOM05D001822 ORTHO05D001744 2.5e-12 75.5 40 80.0
FAN08G2979 Fragaria x ananassa HOM05D001822 ORTHO05D001744 2.5e-12 75.5 40 80.0
SGA_v2.0_scaffold40G15644 Striga asiatica HOM05D001822 ORTHO05D001744 2.5e-12 75.5 40 80.0
ClCG04G010430 Citrullus lanatus HOM05D001402 ORTHO05D001302 3.2e-12 75.1 40 82.5
Nitab4.5_0006110g0020 Nicotiana tabacum HOM05D001822 ORTHO05D001744 3.2e-12 75.1 40 80.0
Peaxi162Scf00171g00926 Petunia axillaris HOM05D001822 ORTHO05D001744 3.2e-12 75.1 40 80.0
Potri.012G042700 Populus trichocarpa HOM05D001822 ORTHO05D001744 3.2e-12 75.1 40 82.5
Solyc03g097970.3 Solanum lycopersicum HOM05D001822 ORTHO05D001744 3.2e-12 75.1 40 80.0
Sopen03g028680 Solanum pennellii HOM05D001822 ORTHO05D001744 3.2e-12 75.1 40 80.0
PGSC0003DMG400033690 Solanum tuberosum HOM05D001822 ORTHO05D001744 3.2e-12 75.1 40 80.0
SGA_v2.0_scaffold72G24130 Striga asiatica HOM05D001822 ORTHO05D001744 3.2e-12 75.1 40 75.0
Ah.10g033410 Amaranthus hybridus HOM05D001822 ORTHO05D001744 4.2e-12 74.7 40 77.5
Lalb_Chr24g0398211 Lupinus albus HOM05D001822 ORTHO05D001744 4.2e-12 74.7 40 82.5
Nitab4.5_0000430g0140 Nicotiana tabacum HOM05D001822 ORTHO05D001744 4.2e-12 74.7 40 80.0
QL10p031714 Quercus lobata HOM05D001822 ORTHO05D001744 4.2e-12 74.7 40 87.5
PGSC0003DMG400026948 Solanum tuberosum HOM05D001822 ORTHO05D001744 4.2e-12 74.7 39 82.1
Atru.chr9.1602 Acer truncatum HOM05D001822 ORTHO05D001744 5.5e-12 74.3 40 77.5
BcaB04g18963 Brassica carinata HOM05D001822 ORTHO05D001744 5.5e-12 74.3 40 77.5
A01p36590 Brassica napus HOM05D001822 ORTHO05D001744 5.5e-12 74.3 40 77.5
BraA01t03723Z Brassica rapa HOM05D001822 ORTHO05D001744 5.5e-12 74.3 40 77.5
Oeu016187.1 Olea europaea HOM05D001822 ORTHO05D001744 5.5e-12 74.3 40 75.0
Oeu016191.2 Olea europaea HOM05D001822 ORTHO05D001744 5.5e-12 74.3 40 75.0
THA.LOC104821825 Tarenaya hassleriana HOM05D001822 ORTHO05D001744 5.5e-12 74.3 40 75.0
AUR62036003 Chenopodium quinoa HOM05D001822 ORTHO05D001744 7.2e-12 73.9 40 75.0
Thhalv10011861m.g Eutrema salsugineum HOM05D001822 ORTHO05D001744 7.2e-12 73.9 40 77.5
Gohir.D02G119500 Gossypium hirsutum HOM05D001822 ORTHO05D001744 7.2e-12 73.9 40 77.5
PGR044G0883 Punica granatum HOM05D001822 ORTHO05D001744 7.2e-12 73.9 40 80.0
BcaC09g48739 Brassica carinata HOM05D001822 ORTHO05D001744 9.4e-12 73.6 40 77.5
A08p04700 Brassica napus HOM05D001822 ORTHO05D001744 9.4e-12 73.6 40 77.5
C01p46420 Brassica napus HOM05D001822 ORTHO05D001744 9.4e-12 73.6 40 77.5
BolC1t04602H Brassica oleracea HOM05D001822 ORTHO05D001744 9.4e-12 73.6 40 77.5
Aa31LG8G4660 Aethionema arabicum HOM05D001822 ORTHO05D001744 1.2e-11 73.2 40 75.0
Lj2g0005355 Lotus japonicus HOM05D001822 ORTHO05D001744 1.2e-11 73.2 42 73.8
MD06G1232700 Malus domestica HOM05D001822 ORTHO05D001744 1.2e-11 73.2 40 77.5
AL3G30940 Arabidopsis lyrata HOM05D001822 ORTHO05D001744 1.6e-11 72.8 40 75.0
MSTRG.9354 Avicennia marina HOM05D001822 ORTHO05D001744 1.6e-11 72.8 40 75.0
BcaC01g03733 Brassica carinata HOM05D001822 ORTHO05D001744 1.6e-11 72.8 40 75.0
BcaNung05881 Brassica carinata HOM05D001822 ORTHO05D001744 1.6e-11 72.8 40 75.0
A05p32060 Brassica napus HOM05D001822 ORTHO05D001744 1.6e-11 72.8 40 75.0
C03p49170 Brassica napus HOM05D001822 ORTHO05D001744 1.6e-11 72.8 40 75.0
C05p48560 Brassica napus HOM05D001822 ORTHO05D001744 1.6e-11 72.8 40 75.0
BolC3t17199H Brassica oleracea HOM05D001822 ORTHO05D001744 1.6e-11 72.8 40 75.0
BolC5t33592H Brassica oleracea HOM05D001822 ORTHO05D001744 1.6e-11 72.8 40 75.0
BraA03t13188Z Brassica rapa HOM05D001822 ORTHO05D001744 1.6e-11 72.8 40 75.0
BraA05t22035Z Brassica rapa HOM05D001822 ORTHO05D001744 1.6e-11 72.8 40 75.0
CARHR093130 Cardamine hirsuta HOM05D001822 ORTHO05D001744 1.6e-11 72.8 40 75.0
ECA238G1607 Erigeron canadensis HOM05D001822 ORTHO05D001744 1.6e-11 72.8 42 69.0
Sp3g15900 Schrenkiella parvula HOM05D001822 ORTHO05D001744 1.6e-11 72.8 40 75.0
BcaB04g20816 Brassica carinata HOM05D001822 ORTHO05D001744 2.1e-11 72.4 40 75.0
Prupe.5G237300 Prunus persica HOM05D001822 ORTHO05D001744 2.1e-11 72.4 40 80.0
BcaC07g37134 Brassica carinata HOM05D001822 ORTHO05D001744 2.7e-11 72.0 40 75.0
BolC8t47312H Brassica oleracea HOM05D001822 ORTHO05D001744 2.7e-11 72.0 40 75.0
Thhalv10021758m.g Eutrema salsugineum HOM05D001822 ORTHO05D001744 2.7e-11 72.0 40 72.5
Lj5A163T74 Lonicera japonica HOM05D001822 ORTHO05D001744 2.7e-11 72.0 40 77.5
PSO782G1385 Papaver somniferum HOM05D001822 ORTHO05D001744 2.7e-11 72.0 40 77.5
Sp1g35390 Schrenkiella parvula HOM05D001822 ORTHO05D001744 2.7e-11 72.0 40 75.0
AL1G55070 Arabidopsis lyrata HOM05D001822 ORTHO05D001744 3.6e-11 71.6 40 75.0
AT1G48440 Arabidopsis thaliana HOM05D001822 ORTHO05D001744 3.6e-11 71.6 40 75.0
BcaC09g49524 Brassica carinata HOM05D001822 ORTHO05D001744 3.6e-11 71.6 41 73.2
A03p40380 Brassica napus HOM05D001822 ORTHO05D001744 3.6e-11 71.6 40 75.0
Sabra15G0025800 Salix brachista HOM05D001822 ORTHO05D001744 3.6e-11 71.6 40 80.0
SalBow1G6119 Salvia bowleyana HOM05D001822 ORTHO05D001744 3.6e-11 71.6 41 73.2
TWI60G0300 Tripterygium wilfordii HOM05D001822 ORTHO05D001744 3.6e-11 71.6 40 70.0
AT3G17780 Arabidopsis thaliana HOM05D001822 ORTHO05D001744 4.6e-11 71.2 40 70.0
EL10Ac2g03530 Beta vulgaris HOM05D001822 ORTHO05D001744 4.6e-11 71.2 39 74.4
CARHR038060 Cardamine hirsuta HOM05D001822 ORTHO05D001744 4.6e-11 71.2 40 75.0
Migut.D01217 Erythranthe guttata HOM05D001822 ORTHO05D001744 4.6e-11 71.2 38 73.7
CDE05G3485 Ceratophyllum demersum HOM05D001822 ORTHO05D001744 6.1e-11 70.9 40 80.0
Ciclev10022844m.g Citrus clementina HOM05D001822 ORTHO05D001744 6.1e-11 70.9 40 77.5
C01p35570 Brassica napus HOM05D000373 ORTHO05D016760 7.9e-11 70.5 40 72.5
C02p27380 Brassica napus HOM05D000373 ORTHO05D016760 7.9e-11 70.5 40 72.5
C05p31560 Brassica napus HOM05D000373 ORTHO05D016760 7.9e-11 70.5 40 72.5
BolC1t03517H Brassica oleracea HOM05D000373 ORTHO05D016760 7.9e-11 70.5 40 72.5
BolC2t08799H Brassica oleracea HOM05D000373 ORTHO05D016760 7.9e-11 70.5 40 72.5
AUR62041618 Chenopodium quinoa HOM05D001822 ORTHO05D001744 7.9e-11 70.5 40 70.0
Gohir.A11G002300 Gossypium hirsutum HOM05D001822 ORTHO05D001744 7.9e-11 70.5 39 76.9
Gohir.D11G001900 Gossypium hirsutum HOM05D001822 ORTHO05D001744 7.9e-11 70.5 39 76.9
Gorai.007G002900 Gossypium raimondii HOM05D001822 ORTHO05D001744 7.9e-11 70.5 39 76.9
MSTRG.11246 Avicennia marina HOM05D001822 ORTHO05D001744 1.0e-10 70.1 40 70.0
BcaC03g15165 Brassica carinata HOM05D000373 ORTHO05D016760 1.0e-10 70.1 40 70.0
Carub.0001s3757 Capsella rubella HOM05D001822 ORTHO05D001744 1.0e-10 70.1 39 74.4
Ca_25359_v3 Cicer arietinum L. HOM05D001822 ORTHO05D001744 1.0e-10 70.1 40 70.0
Lalb_Chr14g0370561 Lupinus albus HOM05D001822 ORTHO05D001744 1.0e-10 70.1 40 72.5
PSO063G6928 Papaver somniferum HOM05D001822 ORTHO05D001744 1.0e-10 70.1 40 75.0
RcHm_v2.0_Chr7g0177941 Rosa chinensis HOM05D001822 ORTHO05D001744 1.0e-10 70.1 40 75.0
TWI15G0711 Tripterygium wilfordii HOM05D001822 ORTHO05D001744 1.4e-10 69.7 40 70.0
CDE05G1300 Ceratophyllum demersum HOM05D001822 ORTHO05D001744 1.8e-10 69.3 40 77.5
Nn4g24479 Nelumbo nucifera HOM05D001822 ORTHO05D001744 2.3e-10 68.9 40 75.0
Glyma.09G172200 Glycine max HOM05D001822 ORTHO05D001744 3.0e-10 68.6 40 80.0
Lalb_Chr22g0353571 Lupinus albus HOM05D001822 ORTHO05D001744 3.9e-10 68.2 40 75.0
Os03g0240700 Oryza sativa ssp. japonica HOM05D001822 ORTHO05D001744 3.9e-10 68.2 40 70.0
Medtr6g071330 Medicago truncatula HOM05D001822 ORTHO05D001744 5.1e-10 67.8 39 74.4
Phvul.004G147600 Phaseolus vulgaris HOM05D001822 ORTHO05D001744 5.1e-10 67.8 40 75.0
TPR.G1737 Trifolium pratense HOM05D001822 ORTHO05D001744 5.1e-10 67.8 39 76.9
HPP92_010983 Vanilla planifolia HOM05D001822 ORTHO05D001744 5.1e-10 67.8 42 71.4
VMungo0464G0620 Vigna mungo HOM05D001822 ORTHO05D001744 5.1e-10 67.8 40 75.0
Medtr5g048060 Medicago truncatula HOM05D001822 ORTHO05D001744 6.7e-10 67.4 39 74.4
Hund22443 Selenicereus undatus HOM05D001822 ORTHO05D001744 6.7e-10 67.4 38 65.8
BcaB04g17423 Brassica carinata HOM05D001822 ORTHO05D001744 8.8e-10 67.0 40 67.5
Dinv11758 Davidia involucrata HOM05D001822 ORTHO05D001744 8.8e-10 67.0 40 77.5
arahy.Tifrunner.gnm1.ann1.427R57 Arachis hypogaea HOM05D001822 ORTHO05D001744 1.1e-09 66.6 40 70.0
MD14G1239700 Malus domestica HOM05D001822 ORTHO05D001744 1.1e-09 66.6 40 70.0
Psat1g029360 Pisum sativum HOM05D001822 ORTHO05D001744 1.5e-09 66.2 39 71.8
SalBow5G1192 Salvia bowleyana HOM05D001822 ORTHO05D001744 1.5e-09 66.2 40 60.0
ATR0021G038 Amborella trichopoda HOM05D001822 ORTHO05D001744 2.0e-09 65.9 40 75.0
Glyma.07G105900 Glycine max HOM05D001822 ORTHO05D001744 2.0e-09 65.9 40 77.5
Aqoxy3G04027 Aquilegia oxysepala HOM05D001822 ORTHO05D001744 3.3e-09 65.1 39 69.2
Migut.I00568 Erythranthe guttata HOM05D001822 ORTHO05D001744 4.3e-09 64.7 40 70.0
MBI19_g39073_MAGBIO Magnolia biondii HOM05D001822 ORTHO05D001744 4.3e-09 64.7 40 77.5
unitig_62.g23811 Utricularia gibba HOM05D001822 ORTHO05D001744 4.3e-09 64.7 40 67.5
BraA08t32500Z Brassica rapa HOM05D001822 ORTHO05D001744 5.7e-09 64.3 53 58.5
Aa31LG10G5340 Aethionema arabicum HOM05D001822 ORTHO05D001744 9.7e-09 63.5 47 59.6
GSVIVG01011617001 Vitis vinifera HOM05D001822 ORTHO05D001744 9.7e-09 63.5 40 70.0
C08p05070 Brassica napus HOM05D001822 ORTHO05D001744 1.7e-08 62.8 53 56.6
unitig_699.g19808 Utricularia gibba HOM05D001822 ORTHO05D001744 1.7e-08 62.8 40 62.5
Zm00001eb010230 Zea mays HOM05D001822 ORTHO05D001744 3.7e-08 61.6 40 65.0


User provided reference genes

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