Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_18816 Corylus avellana HOM05D004636 ORTHO05D005584 7.8e-180 633.6 314 100.0
Haze_18812 Corylus avellana HOM05D004636 ORTHO05D005584 8.3e-113 411.0 292 75.7
QL10p028203 Quercus lobata HOM05D004636 ORTHO05D005584 8.0e-108 394.4 321 68.5
QL10p028318 Quercus lobata HOM05D004636 ORTHO05D005584 8.0e-108 394.4 321 68.5
CiPaw.15G140800 Carya illinoinensis HOM05D004636 ORTHO05D005584 9.1e-104 380.9 292 70.2
GSVIVG01008416001 Vitis vinifera HOM05D004636 ORTHO05D005584 1.6e-103 380.2 320 64.4
CSS0010888 Camellia sinensis var. sinensis HOM05D004636 ORTHO05D005584 2.9e-102 375.9 322 62.7
Actinidia39845 Actinidia chinensis HOM05D004636 ORTHO05D005584 5.0e-102 375.2 321 62.9
Thecc.03G053600 Theobroma cacao HOM05D004636 ORTHO05D005584 3.3e-101 372.5 297 67.0
Ciclev10009007m.g Citrus clementina HOM05D004636 ORTHO05D005584 5.6e-101 371.7 319 63.9
FAN08G1718 Fragaria x ananassa HOM05D004636 ORTHO05D005584 7.2e-101 371.3 297 66.0
CSS0035576 Camellia sinensis var. sinensis HOM05D004636 ORTHO05D005584 1.6e-100 370.2 297 64.3
FAN13G2936 Fragaria x ananassa HOM05D004636 ORTHO05D005584 4.7e-100 368.6 297 65.3
Gohir.D02G122500 Gossypium hirsutum HOM05D004636 ORTHO05D005584 6.1e-100 368.2 292 66.4
Nitab4.5_0003221g0040 Nicotiana tabacum HOM05D004636 ORTHO05D005584 6.1e-100 368.2 297 65.7
PGR083G1819 Punica granatum HOM05D004636 ORTHO05D005584 8.0e-100 367.9 297 64.3
Nitab4.5_0007852g0030 Nicotiana tabacum HOM05D004636 ORTHO05D005584 1.0e-99 367.5 297 65.3
TAR371G0148 Trochodendron aralioides HOM05D004636 ORTHO05D005584 1.0e-99 367.5 297 65.0
Manes.14G170300 Manihot esculenta HOM05D004636 ORTHO05D005584 1.4e-99 367.1 297 66.3
Nn4g24193 Nelumbo nucifera HOM05D004636 ORTHO05D005584 1.4e-99 367.1 297 65.0
Gorai.005G131600 Gossypium raimondii HOM05D004636 ORTHO05D005584 1.8e-99 366.7 292 66.1
TWI60G0943 Tripterygium wilfordii HOM05D004636 ORTHO05D005584 1.8e-99 366.7 318 63.2
Duzib205G0159 Durio zibethinus HOM05D004636 ORTHO05D005584 2.3e-99 366.3 297 65.0
Gohir.A03G093400 Gossypium hirsutum HOM05D004636 ORTHO05D005584 2.3e-99 366.3 292 66.1
Prupe.5G232000 Prunus persica HOM05D004636 ORTHO05D005584 3.0e-99 365.9 297 64.6
SalBow1G0702 Salvia bowleyana HOM05D004636 ORTHO05D005584 6.8e-99 364.8 292 64.7
Migut.D01560 Erythranthe guttata HOM05D004636 ORTHO05D005584 1.5e-98 363.6 292 63.7
Sc04g0004880 Simmondsia chinensis HOM05D004636 ORTHO05D005584 1.5e-98 363.6 292 64.7
RcHm_v2.0_Chr7g0178611 Rosa chinensis HOM05D004636 ORTHO05D005584 2.0e-98 363.2 297 64.3
CAN.G423.25 Capsicum annuum HOM05D004636 ORTHO05D005584 2.6e-98 362.8 292 64.0
MELO3C002127.2 Cucumis melo HOM05D004636 ORTHO05D005584 4.4e-98 362.1 297 64.3
Atru.chr9.1749 Acer truncatum HOM05D004636 ORTHO05D005584 5.7e-98 361.7 316 62.3
Lj4g0026502 Lotus japonicus HOM05D004636 ORTHO05D005584 5.7e-98 361.7 297 64.6
Lalb_Chr16g0387091 Lupinus albus HOM05D004636 ORTHO05D005584 5.7e-98 361.7 297 64.6
Cpa.g.sc3.409 Carica papaya HOM05D004636 ORTHO05D005584 7.5e-98 361.3 297 64.6
Solyc06g068970.3 Solanum lycopersicum HOM05D004636 ORTHO05D005584 7.5e-98 361.3 297 63.3
Sopen06g026260 Solanum pennellii HOM05D004636 ORTHO05D005584 7.5e-98 361.3 297 63.3
Os03g0708400 Oryza sativa ssp. japonica HOM05D004636 ORTHO05D005584 9.8e-98 360.9 292 65.8
Zm00001eb216550 Zea mays HOM05D004636 ORTHO05D005584 9.8e-98 360.9 292 66.1
CsaV3_1G007090 Cucumis sativus L. HOM05D004636 ORTHO05D005584 1.3e-97 360.5 319 61.4
Ca_17202_v3 Cicer arietinum L. HOM05D004636 ORTHO05D005584 2.2e-97 359.8 297 63.3
ClCG04G010690 Citrullus lanatus HOM05D004636 ORTHO05D005584 2.2e-97 359.8 319 61.8
MD14G1235300 Malus domestica HOM05D004636 ORTHO05D005584 2.2e-97 359.8 297 63.6
Psat7g002040 Pisum sativum HOM05D004636 ORTHO05D005584 2.2e-97 359.8 297 62.6
Cc04_g06400 Coffea canephora HOM05D004636 ORTHO05D005584 2.9e-97 359.4 292 63.7
Sed0027092 Sechium edule HOM05D004636 ORTHO05D005584 3.7e-97 359.0 297 63.6
PGSC0003DMG402028784 Solanum tuberosum HOM05D004636 ORTHO05D005584 3.7e-97 359.0 297 63.0
Potri.015G039900 Populus trichocarpa HOM05D004636 ORTHO05D005584 6.4e-97 358.2 297 65.0
MD06G1230700 Malus domestica HOM05D004636 ORTHO05D005584 8.3e-97 357.8 297 63.6
PSO478G0328 Papaver somniferum HOM05D004636 ORTHO05D005584 1.1e-96 357.5 292 64.0
Aqoxy5G00264 Aquilegia oxysepala HOM05D004636 ORTHO05D005584 7.0e-96 354.8 297 59.9
TPR.G1423 Trifolium pratense HOM05D004636 ORTHO05D005584 1.2e-95 354.0 297 61.6
PSO017G6915 Papaver somniferum HOM05D004636 ORTHO05D005584 2.0e-95 353.2 292 63.0
Phvul.002G329000 Phaseolus vulgaris HOM05D004636 ORTHO05D005584 2.7e-95 352.8 297 61.6
Glyma.08G053000 Glycine max HOM05D004636 ORTHO05D005584 3.5e-95 352.4 297 63.0
ECA246G4140 Erigeron canadensis HOM05D004636 ORTHO05D005584 5.9e-95 351.7 297 62.6
HanXRQChr17g0539331 Helianthus annuus HOM05D004636 ORTHO05D005584 5.9e-95 351.7 297 61.6
Nitab4.5_0001456g0100 Nicotiana tabacum HOM05D004636 ORTHO05D005584 1.3e-94 350.5 293 62.1
HPP92_004161 Vanilla planifolia HOM05D004636 ORTHO05D005584 2.3e-94 349.7 292 61.6
Aqoxy3G00107 Aquilegia oxysepala HOM05D004636 ORTHO05D005584 3.0e-94 349.4 297 61.6
Rhsim08G0076500 Rhododendron simsii HOM05D004636 ORTHO05D005584 5.0e-94 348.6 326 58.0
EL10Ac8g20412 Beta vulgaris HOM05D004636 ORTHO05D005584 1.1e-93 347.4 297 60.6
THA.LOC104813922 Tarenaya hassleriana HOM05D004636 ORTHO05D005584 1.9e-93 346.7 314 60.2
Duzib068G0268 Durio zibethinus HOM05D004636 ORTHO05D005584 2.5e-93 346.3 292 62.3
Sabra15G0057200 Salix brachista HOM05D004636 ORTHO05D005584 2.5e-93 346.3 329 59.0
Lalb_Chr05g0221771 Lupinus albus HOM05D004636 ORTHO05D005584 3.3e-93 345.9 299 61.5
ATR1102G012 Amborella trichopoda HOM05D004636 ORTHO05D005584 4.3e-93 345.5 297 60.9
Lsat_1_v5_gn_3_28120 Lactuca sativa HOM05D004636 ORTHO05D005584 7.3e-93 344.7 297 60.9
CAN.G1129.48 Capsicum annuum HOM05D004636 ORTHO05D005584 2.1e-92 343.2 313 59.4
Nitab4.5_0006894g0020 Nicotiana tabacum HOM05D004636 ORTHO05D005584 2.1e-92 343.2 293 61.1
Sopen03g037780 Solanum pennellii HOM05D004636 ORTHO05D005584 3.6e-92 342.4 293 60.4
Medtr8g107030 Medicago truncatula HOM05D004636 ORTHO05D005584 1.8e-91 340.1 328 55.8
Solyc03g118830.3 Solanum lycopersicum HOM05D004636 ORTHO05D005584 3.1e-91 339.3 293 60.1
unitig_0.g807 Utricularia gibba HOM05D004636 ORTHO05D005584 6.8e-91 338.2 292 60.3
SGA_v2.0_scaffold191G40443 Striga asiatica HOM05D004636 ORTHO05D005584 1.2e-90 337.4 354 54.0
CARHR066710 Cardamine hirsuta HOM05D004636 ORTHO05D005584 7.5e-90 334.7 297 59.3
Sp5g28820 Schrenkiella parvula HOM05D004636 ORTHO05D005584 7.5e-90 334.7 297 59.9
BcaB05g24805 Brassica carinata HOM05D004636 ORTHO05D005584 1.3e-89 334.0 297 59.9
Carub.0002s2039 Capsella rubella HOM05D004636 ORTHO05D005584 3.7e-89 332.4 297 59.9
Thhalv10018948m.g Eutrema salsugineum HOM05D004636 ORTHO05D005584 8.3e-89 331.3 297 59.3
BcaC08g46785 Brassica carinata HOM05D004636 ORTHO05D005584 2.4e-88 329.7 297 58.6
AT1G73650 Arabidopsis thaliana HOM05D004636 ORTHO05D005584 3.2e-88 329.3 297 58.9
AL2G33430 Arabidopsis lyrata HOM05D004636 ORTHO05D005584 4.1e-88 328.9 297 58.9
BraA07t31501Z Brassica rapa HOM05D004636 ORTHO05D005584 7.0e-88 328.2 297 58.2
Peaxi162Scf00683g00341 Petunia axillaris HOM05D004636 ORTHO05D005584 9.2e-88 327.8 278 61.2
BraA02t06927Z Brassica rapa HOM05D004636 ORTHO05D005584 1.6e-87 327.0 298 59.7
Sp1g16160 Schrenkiella parvula HOM05D004636 ORTHO05D005584 2.0e-87 326.6 297 59.3
PGSC0003DMG401005669 Solanum tuberosum HOM05D004636 ORTHO05D005584 6.0e-87 325.1 325 54.8
CDE06G1767 Ceratophyllum demersum HOM05D004636 ORTHO05D005584 1.3e-86 323.9 276 60.1
Aa31LG4G3950 Aethionema arabicum HOM05D004636 ORTHO05D005584 1.7e-86 323.6 292 58.2
BcaC03g15444 Brassica carinata HOM05D002296 ORTHO05D005584 3.0e-86 322.8 293 60.1
C05p16490 Brassica napus HOM05D004636 ORTHO05D005584 3.0e-86 322.8 297 58.2
BolC2t09166H Brassica oleracea HOM05D004636 ORTHO05D005584 3.0e-86 322.8 293 60.1
C02p31240 Brassica napus HOM05D004636 ORTHO05D005584 6.6e-86 321.6 293 59.4
BolC6t39815H Brassica oleracea HOM05D004636 ORTHO05D005584 6.6e-86 321.6 297 57.6
A06p14210 Brassica napus HOM05D004636 ORTHO05D005584 1.1e-85 320.9 297 57.9
Glyma.05G245000 Glycine max HOM05D004636 ORTHO05D005584 1.1e-85 320.9 271 63.8
AT1G18180 Arabidopsis thaliana HOM05D004636 ORTHO05D005584 3.3e-85 319.3 297 56.9
A02p18820 Brassica napus HOM05D004636 ORTHO05D005584 7.3e-85 318.2 298 58.7
BraA06t24552Z Brassica rapa HOM05D004636 ORTHO05D005584 7.3e-85 318.2 297 57.2
BcaC05g25713 Brassica carinata HOM05D004636 ORTHO05D005584 9.5e-85 317.8 297 57.2
BolC5t30346H Brassica oleracea HOM05D004636 ORTHO05D005584 9.5e-85 317.8 297 57.2
Haze_18815 Corylus avellana HOM05D004636 ORTHO05D005584 8.1e-84 314.7 305 61.6
BcaB03g15070 Brassica carinata HOM05D004636 ORTHO05D005584 1.1e-83 314.3 298 57.7
Aa31LG7G2890 Aethionema arabicum HOM05D004636 ORTHO05D005584 1.4e-83 313.9 297 55.9
Carub.0001s1782 Capsella rubella HOM05D004636 ORTHO05D005584 3.1e-83 312.8 297 56.6
CARHR018750 Cardamine hirsuta HOM05D004636 ORTHO05D005584 3.1e-83 312.8 297 56.6
Gohir.D11G003200 Gossypium hirsutum HOM05D004636 ORTHO05D005584 5.2e-83 312.0 292 54.5
Lj5C156T13 Lonicera japonica HOM05D004636 ORTHO05D005584 5.2e-83 312.0 297 58.9
Gohir.A11G003700 Gossypium hirsutum HOM05D004636 ORTHO05D005584 8.9e-83 311.2 292 54.5
SEGI_28538 Sequoiadendron giganteum HOM05D004636 ORTHO05D005584 2.0e-82 310.1 289 55.7
Peaxi162Scf00207g00030 Petunia axillaris HOM05D004636 ORTHO05D005584 2.6e-82 309.7 297 57.9
Pp3c13_4300 Physcomitrium patens HOM05D004636 ORTHO05D005584 3.4e-82 309.3 308 52.9
AL1G30550 Arabidopsis lyrata HOM05D004636 ORTHO05D005584 4.4e-82 308.9 296 56.1
Gorai.007G004200 Gossypium raimondii HOM05D004636 ORTHO05D005584 4.4e-82 308.9 292 54.1
Lj5C156T2 Lonicera japonica HOM05D004636 ORTHO05D005584 2.9e-81 306.2 301 56.8
Mapoly0088s0079 Marchantia polymorpha HOM05D004636 ORTHO05D005584 2.1e-79 300.1 299 53.8
Mapoly0098s0041 Marchantia polymorpha HOM05D004636 ORTHO05D005584 4.6e-79 298.9 289 54.7
arahy.Tifrunner.gnm1.ann1.N5TGRV Arachis hypogaea HOM05D004636 ORTHO05D005584 1.0e-78 297.7 327 51.7
unitig_60.g25784 Utricularia gibba HOM05D004636 ORTHO05D005584 1.0e-78 297.7 299 55.5
Manes.06G007800 Manihot esculenta HOM05D004636 ORTHO05D005584 2.3e-78 296.6 291 57.7
C06p47770 Brassica napus HOM05D000239 ORTHO05D000484 6.6e-78 295.0 280 55.7
AUR62017039 Chenopodium quinoa HOM05D004636 ORTHO05D005584 8.6e-78 294.7 292 53.8
AagrBONN_evm.TU.Sc2ySwM_368.3263 Anthoceros agrestis HOM05D004636 ORTHO05D005584 9.5e-77 291.2 292 53.1
vmacro18131 Vaccinium macrocarpon HOM05D004636 ORTHO05D005584 2.8e-76 289.7 322 50.9
Ah.14g089580 Amaranthus hybridus HOM05D004636 ORTHO05D005584 8.9e-75 284.6 299 50.8
A07p39520 Brassica napus HOM05D004636 ORTHO05D005584 5.8e-74 282.0 246 59.3
CBR_g19480 Chara braunii HOM05D004636 ORTHO05D005584 1.7e-73 280.4 293 49.1
Pp3c14_25340 Physcomitrium patens HOM05D004636 ORTHO05D005584 1.7e-70 270.4 303 49.5
arahy.Tifrunner.gnm1.ann1.1QZS5S Arachis hypogaea HOM05D004636 ORTHO05D005584 6.6e-70 268.5 336 48.5
Pp3c10_10850 Physcomitrium patens HOM05D004636 ORTHO05D005584 1.1e-69 267.7 293 50.2
DCAR_010202 Daucus carota HOM05D004636 ORTHO05D005584 6.2e-68 261.9 230 57.0
Oeu046173.1 Olea europaea HOM05D004636 ORTHO05D005584 1.4e-67 260.8 198 66.2
Oeu046174.1 Olea europaea HOM05D004636 ORTHO05D005584 1.4e-67 260.8 198 66.2
Mapoly0024s0109 Marchantia polymorpha HOM05D004636 ORTHO05D005584 3.1e-67 259.6 299 47.8
Dinv18254 Davidia involucrata HOM05D004636 ORTHO05D005584 2.2e-65 253.4 202 66.3
Thhalv10008683m.g Eutrema salsugineum HOM05D004636 ORTHO05D005584 4.2e-56 222.6 204 54.9
AUR62044488 Chenopodium quinoa HOM05D004636 ORTHO05D005584 1.6e-55 220.7 170 61.8
Haze_18821 Corylus avellana HOM05D004636 ORTHO05D005584 1.5e-53 214.2 155 71.0
Lsat_1_v5_gn_4_113781 Lactuca sativa HOM05D004636 ORTHO05D005584 1.4e-51 207.6 204 57.8
PGSC0003DMG402005669 Solanum tuberosum HOM05D004636 ORTHO05D005584 5.3e-51 205.7 188 56.9
COL.COLO4_16136 Corchorus olitorius HOM05D004636 ORTHO05D005584 1.2e-47 194.5 200 51.0
Sed0020868 Sechium edule HOM05D004636 ORTHO05D005584 1.2e-47 194.5 142 68.3
ATR1102G014 Amborella trichopoda HOM05D004636 ORTHO05D005584 4.6e-47 192.6 151 60.9
Cfa022515 Carpinus fangiana HOM05D004636 ORTHO05D005584 9.0e-35 151.8 313 38.0
Hund23775 Selenicereus undatus HOM05D004636 ORTHO05D005584 2.9e-33 146.7 91 69.2
AUR62014842 Chenopodium quinoa HOM05D004636 ORTHO05D005584 1.0e-30 138.3 181 48.1
CBR_g30737 Chara braunii HOM05D004636 ORTHO05D005584 4.8e-28 129.4 233 34.8
Cre09.g401701 Chlamydomonas reinhardtii HOM05D004636 ORTHO05D005584 5.0e-25 119.4 259 30.5
HPP92_011083 Vanilla planifolia HOM05D004636 ORTHO05D005584 7.2e-24 115.5 81 54.3
MCO11G174 Micromonas commoda HOM05D004636 ORTHO05D005584 3.3e-21 106.7 270 31.5
Nn2g11442 Nelumbo nucifera HOM05D000001 ORTHO05D000003 9.1e-19 98.6 91 51.6
PRCOL_00001152 Prasinoderma coloniale HOM05D004636 ORTHO05D005584 9.1e-19 98.6 213 32.9
MCO02G479 Micromonas commoda HOM05D004636 ORTHO05D049179 2.0e-10 70.9 66 43.9
Cfa026861 Carpinus fangiana HOM05D004636 ORTHO05D005584 5.0e-09 66.2 170 30.0
Cre07.g325450 Chlamydomonas reinhardtii HOM05D004720 ORTHO05D005359 2.5e-08 63.9 170 32.4
Oeu055483.1 Olea europaea HOM05D004720 ORTHO05D005359 9.4e-08 62.0 95 38.9
Lsat_1_v5_gn_7_30260 Lactuca sativa HOM05D004720 ORTHO05D005359 4.7e-07 59.7 128 32.0
Oeu040512.1 Olea europaea HOM05D004720 ORTHO05D005359 8.0e-07 58.9 107 32.7
HanXRQChr15g0480161 Helianthus annuus HOM05D004720 ORTHO05D005359 1.8e-06 57.8 128 31.2
Sed0019181 Sechium edule HOM05D004720 ORTHO05D005359 1.8e-06 57.8 106 31.1
TPR.G4773 Trifolium pratense HOM05D004720 ORTHO05D005359 1.8e-06 57.8 79 40.5
ECA236G2191 Erigeron canadensis HOM05D004720 ORTHO05D005359 2.3e-06 57.4 128 31.2
CSS0029348 Camellia sinensis var. sinensis HOM05D004720 ORTHO05D005359 3.0e-06 57.0 119 31.1
Medtr7g117475 Medicago truncatula HOM05D004720 ORTHO05D005359 3.0e-06 57.0 153 30.1
Psat0s786g0040 Pisum sativum HOM05D004720 ORTHO05D005359 4.0e-06 56.6 91 36.3
PRCOL_00003147 Prasinoderma coloniale HOM05D004720 ORTHO05D005359 4.0e-06 56.6 165 29.1
Lj1g0024552 Lotus japonicus HOM05D004720 ORTHO05D005359 6.7e-06 55.8 151 31.8
MBI04_g26123_MAGBIO Magnolia biondii HOM05D004720 ORTHO05D005359 6.7e-06 55.8 124 35.5
DCAR_010453 Daucus carota HOM05D004720 ORTHO05D005359 8.8e-06 55.5 111 33.3
Glyma.19G261600 Glycine max HOM05D004720 ORTHO05D005359 8.8e-06 55.5 93 35.5
HanXRQChr04g0118361 Helianthus annuus HOM05D004720 ORTHO05D005359 8.8e-06 55.5 128 32.0
RcHm_v2.0_Chr1g0361841 Rosa chinensis HOM05D004720 ORTHO05D005359 8.8e-06 55.5 95 38.9


User provided reference genes

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