Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 4.5e-84 314.7 175 100.0
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.1e-69 266.9 181 84.5
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 1.7e-38 163.3 183 57.4
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 1.4e-21 107.1 149 51.7
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 1.2e-20 104.0 182 42.3
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 6.0e-20 101.7 182 41.2
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 1.3e-19 100.5 163 44.8
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 1.7e-19 100.1 151 47.0
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 6.6e-19 98.2 183 41.0
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 6.6e-19 98.2 167 44.9
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 7.3e-18 94.7 182 41.8
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 2.1e-17 93.2 151 46.4
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 2.8e-17 92.8 162 42.0
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 3.6e-17 92.4 183 41.5
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 6.2e-17 91.7 151 41.7
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 1.4e-16 90.5 183 38.8
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 1.8e-16 90.1 182 40.7
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.8e-16 90.1 154 44.8
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 2.3e-16 89.7 151 45.7
PGR083G0382 Punica granatum HOM05D003094 ORTHO05D003482 2.3e-16 89.7 140 46.4
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 5.2e-16 88.6 186 40.9
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 6.8e-16 88.2 151 45.0
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 1.2e-15 87.4 182 40.7
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.2e-15 87.4 183 37.7
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 1.2e-15 87.4 182 39.0
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.5e-15 87.0 183 37.7
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 1.5e-15 87.0 159 42.8
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.0e-15 86.7 183 38.3
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.4e-15 85.5 183 37.2
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 5.8e-15 85.1 183 37.2
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 7.6e-15 84.7 186 39.8
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 7.6e-15 84.7 147 40.8
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 9.9e-15 84.3 183 37.2
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 1.3e-14 84.0 181 37.0
Sabra12G0032200 Salix brachista HOM05D003094 ORTHO05D003482 1.3e-14 84.0 154 43.5
Potri.012G046000 Populus trichocarpa HOM05D003094 ORTHO05D003482 1.7e-14 83.6 154 44.8
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 2.2e-14 83.2 186 38.2
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 2.2e-14 83.2 171 39.8
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.7e-14 82.4 151 40.4
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 6.4e-14 81.6 151 39.1
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 8.4e-14 81.3 183 37.7
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 8.4e-14 81.3 183 36.6
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 1.1e-13 80.9 176 38.1
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.1e-13 80.9 151 38.4
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 1.1e-13 80.9 174 36.8
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 1.1e-13 80.9 184 34.2
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 1.4e-13 80.5 135 42.2
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 1.4e-13 80.5 186 36.6
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 1.9e-13 80.1 183 36.6
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 2.4e-13 79.7 179 37.4
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 2.4e-13 79.7 184 37.5
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 4.1e-13 79.0 151 39.7
Prupe.5G224900 Prunus persica HOM05D003094 ORTHO05D003482 5.4e-13 78.6 181 38.1
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.2e-12 77.4 95 50.5
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 1.6e-12 77.0 119 43.7
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 1.6e-12 77.0 188 38.8
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.7e-12 76.3 95 49.5
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 3.5e-12 75.9 175 35.4
VMungo0464G0085 Vigna mungo HOM05D013688 ORTHO05D013355 3.5e-12 75.9 142 40.8
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.6e-12 75.5 95 49.5
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 7.8e-12 74.7 180 35.6
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 7.8e-12 74.7 184 37.5
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 7.8e-12 74.7 186 35.5
Phvul.004G153600 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 7.8e-12 74.7 154 39.6
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.0e-11 74.3 118 41.5
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.0e-11 74.3 176 35.8
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.0e-11 74.3 160 40.0
arahy.Tifrunner.gnm1.ann1.J45ZPD Arachis hypogaea HOM05D003094 ORTHO05D003482 1.7e-11 73.6 154 40.3
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 1.7e-11 73.6 159 39.0
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 2.3e-11 73.2 160 39.4
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.0e-11 72.8 153 36.6
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 3.0e-11 72.8 145 43.4
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 3.9e-11 72.4 160 37.5
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 5.1e-11 72.0 179 34.6
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 5.1e-11 72.0 180 35.0
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 5.1e-11 72.0 149 38.9
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 6.6e-11 71.6 186 34.9
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 6.6e-11 71.6 159 37.7
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 8.6e-11 71.2 177 36.7
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 8.6e-11 71.2 170 35.9
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 1.5e-10 70.5 175 33.7
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.5e-10 70.5 186 34.9
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 1.5e-10 70.5 174 36.2
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 1.9e-10 70.1 147 42.9
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 2.5e-10 69.7 147 39.5
Glyma.07G097400 Glycine max HOM05D003094 ORTHO05D003482 3.3e-10 69.3 83 53.0
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 4.3e-10 68.9 162 39.5
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 4.3e-10 68.9 174 33.9
Glyma.09G180400 Glycine max HOM05D003094 ORTHO05D003482 4.3e-10 68.9 134 39.6
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 4.3e-10 68.9 105 42.9
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 4.3e-10 68.9 125 38.4
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 5.6e-10 68.6 162 39.5
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 7.3e-10 68.2 184 35.3
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 7.3e-10 68.2 146 35.6
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 1.2e-09 67.4 160 36.9
Lj2g0001179 Lotus japonicus HOM05D003094 ORTHO05D003482 1.2e-09 67.4 153 35.9
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 1.6e-09 67.0 129 40.3
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 1.6e-09 67.0 174 33.3
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 2.1e-09 66.6 98 41.8
Gohir.A13G209900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.1e-09 66.6 122 41.8
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 2.8e-09 66.2 95 42.1
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 3.6e-09 65.9 74 50.0
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 3.6e-09 65.9 174 33.3
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 4.7e-09 65.5 164 39.0
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 6.2e-09 65.1 165 38.2
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 6.2e-09 65.1 80 50.0
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 6.2e-09 65.1 160 39.4
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 8.1e-09 64.7 99 42.4
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 1.1e-08 64.3 164 38.4
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.4e-08 63.9 161 37.3
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 1.4e-08 63.9 159 36.5
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.4e-08 63.9 187 37.4
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 1.4e-08 63.9 160 33.8
CAN.G1129.14 Capsicum annuum HOM05D003094 ORTHO05D003482 1.8e-08 63.5 89 44.9
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 1.8e-08 63.5 155 38.7
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 1.8e-08 63.5 134 32.1
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.8e-08 63.5 144 36.8
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 2.4e-08 63.2 141 34.0
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 2.4e-08 63.2 138 37.0
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 3.1e-08 62.8 108 39.8
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 4.0e-08 62.4 194 36.1
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 4.0e-08 62.4 128 36.7
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 5.2e-08 62.0 192 37.5
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 5.2e-08 62.0 134 34.3
Ca_25471_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 6.8e-08 61.6 62 48.4
Ca_29690_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 6.8e-08 61.6 62 48.4
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 6.8e-08 61.6 84 46.4
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 6.8e-08 61.6 193 33.7
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 6.8e-08 61.6 161 36.6
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 8.9e-08 61.2 160 35.0
Gohir.A03G176500 Gossypium hirsutum HOM05D003094 ORTHO05D003482 8.9e-08 61.2 122 36.9
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.2e-07 60.8 141 36.9
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 1.5e-07 60.5 84 47.6
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 1.5e-07 60.5 84 47.6
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 2.6e-07 59.7 156 37.8
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 2.6e-07 59.7 87 43.7
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 3.4e-07 59.3 86 43.0
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 3.4e-07 59.3 187 32.1
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 4.4e-07 58.9 81 40.7
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 4.4e-07 58.9 195 32.3
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 4.4e-07 58.9 143 36.4
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 4.4e-07 58.9 157 33.1
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 5.8e-07 58.5 96 40.6
Eucgr.B00828 Eucalyptus grandis HOM05D003094 ORTHO05D003482 5.8e-07 58.5 86 46.5
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 7.6e-07 58.2 73 49.3
Medtr6g082590 Medicago truncatula HOM05D003094 ORTHO05D003482 7.6e-07 58.2 134 34.3
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 7.6e-07 58.2 187 31.0
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 9.9e-07 57.8 170 31.8
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 9.9e-07 57.8 120 39.2
TPR.G25985 Trifolium pratense HOM05D003094 ORTHO05D003482 9.9e-07 57.8 67 43.3
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.3e-06 57.4 74 47.3
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 1.3e-06 57.4 171 32.7
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.7e-06 57.0 157 36.9
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.2e-06 56.6 73 47.9
Hma1.2p1_1283F.1_g272860 Hydrangea macrophylla HOM05D003094 ORTHO05D003482 2.2e-06 56.6 81 44.4
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.9e-06 56.2 73 47.9
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 2.9e-06 56.2 170 30.6
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 4.9e-06 55.5 166 33.1
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 4.9e-06 55.5 170 30.0
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 8.4e-06 54.7 126 36.5
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 8.4e-06 54.7 159 34.0


User provided reference genes

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