Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 1.6e-183 646.0 322 100.0
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 1.1e-22 111.7 62 88.7
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 9.0e-22 108.6 62 88.7
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 9.0e-22 108.6 64 85.9
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 8.4e-20 102.1 62 80.6
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 1.1e-19 101.7 62 80.6
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.4e-19 101.3 62 77.4
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.4e-19 101.3 62 77.4
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 1.4e-19 101.3 62 77.4
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.4e-19 101.3 63 76.2
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.4e-19 101.3 63 76.2
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 1.4e-19 101.3 62 79.0
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 1.4e-19 101.3 62 77.4
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 3.2e-19 100.1 62 79.0
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 3.2e-19 100.1 62 79.0
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 3.2e-19 100.1 62 79.0
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 4.2e-19 99.8 63 74.6
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 4.2e-19 99.8 63 74.6
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 4.2e-19 99.8 63 74.6
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 5.5e-19 99.4 62 77.4
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 7.1e-19 99.0 62 77.4
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 7.1e-19 99.0 62 77.4
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 9.3e-19 98.6 62 79.0
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 9.3e-19 98.6 62 75.8
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 1.2e-18 98.2 63 74.6
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.6e-18 97.8 62 79.0
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 1.6e-18 97.8 60 80.0
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 2.1e-18 97.4 62 75.8
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 2.7e-18 97.1 62 74.2
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 2.7e-18 97.1 62 72.6
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 2.7e-18 97.1 58 81.0
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 2.7e-18 97.1 62 75.8
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 2.7e-18 97.1 62 75.8
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 2.7e-18 97.1 62 75.8
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 3.5e-18 96.7 62 72.6
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 4.6e-18 96.3 79 64.6
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 4.6e-18 96.3 62 74.2
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 4.6e-18 96.3 62 75.8
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 4.6e-18 96.3 62 74.2
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 4.6e-18 96.3 62 74.2
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 6.0e-18 95.9 62 75.8
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 6.0e-18 95.9 62 74.2
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 6.0e-18 95.9 62 75.8
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 1.0e-17 95.1 62 72.6
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 1.0e-17 95.1 62 74.2
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 1.0e-17 95.1 62 74.2
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 1.0e-17 95.1 62 74.2
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 1.3e-17 94.7 62 74.2
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 1.3e-17 94.7 63 74.6
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 2.3e-17 94.0 61 73.8
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 2.3e-17 94.0 62 74.2
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 2.3e-17 94.0 62 74.2
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 2.3e-17 94.0 62 74.2
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 3.0e-17 93.6 62 71.0
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 3.0e-17 93.6 62 71.0
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.9e-17 93.2 62 71.0
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 3.9e-17 93.2 62 71.0
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 5.1e-17 92.8 62 74.2
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 5.1e-17 92.8 62 72.6
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 5.1e-17 92.8 62 74.2
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 6.7e-17 92.4 62 72.6
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 6.7e-17 92.4 62 72.6
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 6.7e-17 92.4 62 72.6
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 6.7e-17 92.4 62 72.6
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 6.7e-17 92.4 62 72.6
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 6.7e-17 92.4 62 72.6
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 6.7e-17 92.4 62 69.4
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 6.7e-17 92.4 62 71.0
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 8.7e-17 92.0 62 71.0
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 8.7e-17 92.0 62 71.0
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 8.7e-17 92.0 62 69.4
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 8.7e-17 92.0 62 69.4
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 8.7e-17 92.0 62 69.4
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 1.1e-16 91.7 62 71.0
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 1.1e-16 91.7 62 72.6
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 1.1e-16 91.7 62 72.6
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 1.1e-16 91.7 62 69.4
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 1.5e-16 91.3 62 71.0
Haze_23576 Corylus avellana HOM05D002630 ORTHO05D000952 1.5e-16 91.3 99 54.5
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 1.9e-16 90.9 62 71.0
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 1.9e-16 90.9 62 71.0
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 1.9e-16 90.9 62 71.0
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 2.5e-16 90.5 62 69.4
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 2.5e-16 90.5 62 72.6
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 2.5e-16 90.5 62 69.4
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 3.3e-16 90.1 62 71.0
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 3.3e-16 90.1 62 69.4
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 4.3e-16 89.7 62 67.7
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 4.3e-16 89.7 62 69.4
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 5.6e-16 89.4 62 71.0
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 7.4e-16 89.0 62 71.0
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 9.6e-16 88.6 62 71.0
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 9.6e-16 88.6 62 71.0
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 1.3e-15 88.2 62 71.0
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.3e-15 88.2 62 67.7
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 1.6e-15 87.8 62 69.4
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 2.1e-15 87.4 62 67.7
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 2.1e-15 87.4 62 67.7
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 2.8e-15 87.0 64 65.6
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 3.7e-15 86.7 62 64.5
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 3.7e-15 86.7 62 67.7
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 8.1e-15 85.5 63 63.5
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 1.1e-14 85.1 62 62.9
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 1.1e-14 85.1 62 66.1
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 1.1e-14 85.1 62 66.1
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 1.8e-14 84.3 62 64.5
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 1.8e-14 84.3 58 67.2
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 2.4e-14 84.0 62 64.5
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 3.4e-13 80.1 62 58.1
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 5.8e-13 79.3 64 62.5
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 7.6e-13 79.0 56 67.9
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 2.9e-12 77.0 55 63.6
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 3.8e-12 76.6 62 59.7
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 1.1e-11 75.1 62 58.1
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 5.5e-11 72.8 62 56.5
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 9.3e-11 72.0 62 54.8
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 4.6e-10 69.7 63 55.6
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 4.6e-10 69.7 63 55.6
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 2.3e-09 67.4 62 51.6
Haze_04616 Corylus avellana HOM05D060160 ORTHO05D165254 1.1e-08 65.1 58 60.3


User provided reference genes

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