Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 5.7e-170 600.9 317 100.0
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 2.4e-112 409.5 317 74.1
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 3.2e-88 329.3 317 63.1
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 6.7e-78 295.0 318 56.3
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 4.3e-77 292.4 320 56.2
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 5.9e-66 255.4 312 52.6
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 3.8e-65 252.7 318 49.7
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 3.2e-64 249.6 322 47.8
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 7.2e-64 248.4 318 49.7
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 3.0e-62 243.0 319 48.3
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.6e-60 237.3 322 47.2
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 4.8e-60 235.7 315 50.2
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.8e-59 233.8 319 48.0
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 3.1e-59 233.0 317 47.9
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 9.1e-59 231.5 314 49.0
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.2e-58 231.1 311 53.1
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 2.0e-58 230.3 321 47.0
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 7.7e-58 228.4 319 45.5
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.9e-56 223.8 317 47.6
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 2.7e-55 219.9 343 44.9
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 6.1e-55 218.8 321 46.4
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 5.1e-54 215.7 275 49.1
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 8.8e-54 214.9 326 46.3
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 2.0e-53 213.8 316 46.8
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 4.4e-53 212.6 321 43.6
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 5.7e-53 212.2 322 46.6
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.7e-53 212.2 312 44.6
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 7.4e-53 211.8 312 43.9
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 2.2e-52 210.3 317 45.4
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 3.7e-52 209.5 321 44.2
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 6.3e-52 208.8 312 43.9
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 6.3e-52 208.8 319 42.9
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.4e-51 207.6 317 45.4
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 1.8e-51 207.2 319 45.5
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.9e-51 205.3 324 44.1
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 6.9e-51 205.3 311 48.6
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 9.1e-51 204.9 321 43.0
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 9.1e-51 204.9 324 43.8
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.2e-50 204.5 312 44.2
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.0e-50 203.8 311 48.2
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 2.6e-50 203.4 319 45.8
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 7.7e-50 201.8 318 43.1
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.0e-49 201.4 324 43.5
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 1.0e-49 201.4 317 46.4
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 1.7e-49 200.7 312 45.2
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 2.9e-49 199.9 315 45.4
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 3.8e-49 199.5 327 45.3
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 6.5e-49 198.7 321 43.6
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.5e-49 198.7 324 43.5
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 8.5e-49 198.4 324 43.2
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.9e-48 197.2 330 42.7
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 2.5e-48 196.8 325 41.8
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 7.2e-48 195.3 329 44.1
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 9.4e-48 194.9 319 44.8
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 1.6e-47 194.1 315 42.9
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 1.6e-47 194.1 312 43.9
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 1.6e-47 194.1 312 43.9
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 2.1e-47 193.7 331 45.6
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 2.7e-47 193.4 314 42.7
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 7.9e-47 191.8 334 42.8
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.0e-46 191.4 373 41.3
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 3.0e-46 189.9 311 42.1
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.0e-46 189.9 319 42.9
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 5.2e-46 189.1 314 41.1
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 6.7e-46 188.7 333 45.6
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 8.8e-46 188.3 321 44.2
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 2.0e-45 187.2 315 44.8
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 2.6e-45 186.8 320 43.1
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.3e-45 186.4 321 43.0
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 4.4e-45 186.0 320 41.9
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 1.3e-44 184.5 316 42.1
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.2e-44 183.7 282 42.9
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.8e-44 183.3 237 45.1
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.8e-44 183.3 321 42.4
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 2.8e-44 183.3 314 42.7
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 4.8e-44 182.6 315 41.9
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 8.2e-44 181.8 307 42.7
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.8e-43 180.6 326 42.9
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 9.1e-43 178.3 313 41.9
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 1.2e-42 177.9 322 41.0
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.2e-42 177.9 323 39.3
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 2.0e-42 177.2 260 47.3
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 2.6e-42 176.8 305 41.6
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 4.5e-42 176.0 316 38.9
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 2.9e-41 173.3 333 40.2
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.5e-40 171.0 305 42.0
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 3.2e-40 169.9 310 39.4
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 5.5e-40 169.1 301 41.2
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 7.2e-40 168.7 322 39.4
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 9.4e-40 168.3 327 39.1
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 9.4e-40 168.3 327 39.1
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 9.4e-40 168.3 332 36.7
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 2.1e-39 167.2 321 36.1
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 2.1e-39 167.2 306 39.5
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 2.1e-39 167.2 226 42.5
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 8.0e-39 165.2 297 41.8
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.0e-38 164.9 326 38.3
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 2.3e-38 163.7 316 41.5
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 3.0e-38 163.3 324 39.2
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 4.0e-38 162.9 311 38.3
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 4.0e-38 162.9 326 36.2
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.5e-37 161.0 365 38.4
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 2.0e-37 160.6 320 37.2
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 7.5e-37 158.7 311 37.9
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 9.7e-37 158.3 323 38.7
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 6.3e-36 155.6 134 60.4
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 1.1e-35 154.8 233 45.1
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 4.1e-35 152.9 320 36.2
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 5.3e-35 152.5 310 39.4
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 1.6e-34 151.0 344 36.3
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 2.0e-34 150.6 326 38.7
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 2.7e-34 150.2 309 36.2
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 3.5e-34 149.8 317 39.1
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 4.5e-34 149.4 315 36.8
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 1.0e-33 148.3 322 36.3
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.3e-33 147.9 235 39.1
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.3e-33 147.9 341 35.5
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 2.9e-33 146.7 318 38.4
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 1.2e-31 141.4 143 55.2
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 2.1e-31 140.6 325 32.3
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 6.1e-31 139.0 307 37.5
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 2.3e-30 137.1 215 40.5
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 4.4e-29 132.9 311 37.3
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 5.7e-29 132.5 314 33.4
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 9.8e-29 131.7 238 38.7
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 4.8e-28 129.4 306 37.9
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 8.3e-28 128.6 237 37.1
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.2e-26 124.8 303 33.3
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.7e-25 120.9 317 35.6
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 3.8e-25 119.8 132 49.2
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.8e-23 113.6 122 60.7
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 4.4e-21 106.3 152 41.4
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 7.0e-19 99.0 73 64.4
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 1.2e-18 98.2 123 50.4
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.6e-18 97.8 65 69.2
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.5e-16 91.3 125 52.8
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 2.5e-16 90.5 130 53.8
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 1.6e-15 87.8 294 27.9
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 8.0e-15 85.5 127 37.0
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 2.0e-13 80.9 145 37.2
QL03p011519 Quercus lobata HOM05D004579 ORTHO05D005376 5.7e-13 79.3 87 59.8
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 7.0e-11 72.4 268 32.5
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 5.9e-10 69.3 198 27.3
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 1.0e-09 68.6 91 50.5
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 1.0e-09 68.6 91 50.5
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 3.9e-09 66.6 267 25.5
Actinidia18194 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.5e-08 64.7 71 49.3
Rhsim01G0128100 Rhododendron simsii HOM05D033462 ORTHO05D011520 1.5e-08 64.7 129 38.0
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 5.2e-06 56.2 233 26.6


User provided reference genes

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