Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_18080 Corylus avellana HOM05D006588 ORTHO05D008272 1.6e-86 322.8 165 100.0
Cfa003132 Carpinus fangiana HOM05D006588 ORTHO05D008272 6.7e-13 78.2 46 80.4
TAR636G2459 Trochodendron aralioides HOM05D006588 ORTHO05D008272 8.1e-11 71.2 37 78.4
Actinidia39746 Actinidia chinensis HOM05D006588 ORTHO05D008272 1.4e-10 70.5 37 78.4
CSS0027625 Camellia sinensis var. sinensis HOM05D006588 ORTHO05D008272 2.4e-10 69.7 37 75.7
COL.COLO4_18239 Corchorus olitorius HOM05D006588 ORTHO05D008272 6.9e-10 68.2 55 54.5
Duzib168G2000 Durio zibethinus HOM05D006588 ORTHO05D002622 6.9e-10 68.2 36 75.0
Thecc.09G094100 Theobroma cacao HOM05D006588 ORTHO05D008272 6.9e-10 68.2 36 77.8
Actinidia25278 Actinidia chinensis HOM05D006588 ORTHO05D008272 9.0e-10 67.8 36 69.4
Rhsim05G0031800 Rhododendron simsii HOM05D006588 ORTHO05D008272 1.2e-09 67.4 36 77.8
CiPaw.03G219600 Carya illinoinensis HOM05D006588 ORTHO05D008272 1.5e-09 67.0 36 80.6
Dinv36733 Davidia involucrata HOM05D006588 ORTHO05D008272 2.0e-09 66.6 37 70.3
Manes.03G030400 Manihot esculenta HOM05D006588 ORTHO05D008272 3.4e-09 65.9 46 60.9
Hma1.2p1_1074F.1_g254320 Hydrangea macrophylla HOM05D006588 ORTHO05D008272 5.8e-09 65.1 37 67.6
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 5.8e-09 65.1 37 70.3
Gohir.A06G070700 Gossypium hirsutum HOM05D006588 ORTHO05D008272 7.6e-09 64.7 36 69.4
Gohir.D06G069300 Gossypium hirsutum HOM05D006588 ORTHO05D008272 7.6e-09 64.7 36 69.4
Gorai.010G080900 Gossypium raimondii HOM05D006588 ORTHO05D008272 7.6e-09 64.7 36 69.4
vmacro10821 Vaccinium macrocarpon HOM05D006588 ORTHO05D008272 7.6e-09 64.7 36 69.4
Lsat_1_v5_gn_7_39041 Lactuca sativa HOM05D006588 ORTHO05D008272 1.0e-08 64.3 40 65.0
Eucgr.C00929 Eucalyptus grandis HOM05D006588 ORTHO05D008272 1.3e-08 63.9 37 73.0
Lsat_1_v5_gn_7_38281 Lactuca sativa HOM05D006588 ORTHO05D008272 1.3e-08 63.9 42 64.3
Nn6g35407 Nelumbo nucifera HOM05D006588 ORTHO05D008272 1.3e-08 63.9 36 69.4
QL02p063459 Quercus lobata HOM05D006588 ORTHO05D008272 1.3e-08 63.9 35 74.3
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 2.2e-08 63.2 35 71.4
Lsat_1_v5_gn_7_39080 Lactuca sativa HOM05D006588 ORTHO05D008272 3.8e-08 62.4 42 61.9
Atru.chr7.1520 Acer truncatum HOM05D006588 ORTHO05D008272 4.9e-08 62.0 36 66.7
Duzib150G1363 Durio zibethinus HOM05D006588 ORTHO05D008272 6.5e-08 61.6 36 72.2
Migut.K00574 Erythranthe guttata HOM05D006588 ORTHO05D008272 8.4e-08 61.2 41 65.9
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 8.4e-08 61.2 35 65.7
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 8.4e-08 61.2 35 65.7
Lj4C316T0 Lonicera japonica HOM05D006588 ORTHO05D008272 1.4e-07 60.5 35 65.7
Aa31LG2G21010 Aethionema arabicum HOM05D006588 ORTHO05D008272 1.9e-07 60.1 35 68.6
A01p08610 Brassica napus HOM05D006588 ORTHO05D008272 3.2e-07 59.3 34 70.6
Cc06_g10980 Coffea canephora HOM05D006588 ORTHO05D008272 3.2e-07 59.3 35 68.6
AT4G29420 Arabidopsis thaliana HOM05D006588 ORTHO05D008272 4.2e-07 58.9 35 65.7
Oeu018228.1 Olea europaea HOM05D006588 ORTHO05D008272 4.2e-07 58.9 35 62.9
Carub.0007s1112 Capsella rubella HOM05D006588 ORTHO05D008272 5.5e-07 58.5 35 65.7
Glyma.08G030700 Glycine max HOM05D006588 ORTHO05D008272 5.5e-07 58.5 35 68.6
SalBow1G2363 Salvia bowleyana HOM05D006588 ORTHO05D008272 5.5e-07 58.5 48 52.1
SalBow1G2795 Salvia bowleyana HOM05D006588 ORTHO05D008272 5.5e-07 58.5 48 52.1
VMungo0251G0425 Vigna mungo HOM05D006588 ORTHO05D008272 5.5e-07 58.5 35 71.4
AL7G22970 Arabidopsis lyrata HOM05D006588 ORTHO05D008272 7.1e-07 58.2 35 65.7
CDE06G2665 Ceratophyllum demersum HOM05D006588 ORTHO05D008272 7.1e-07 58.2 43 51.2
Phvul.002G305400 Phaseolus vulgaris HOM05D006588 ORTHO05D008272 7.1e-07 58.2 35 68.6
Sp7g27300 Schrenkiella parvula HOM05D006588 ORTHO05D008272 7.1e-07 58.2 35 68.6
Thhalv10025196m.g Eutrema salsugineum HOM05D006588 ORTHO05D008272 9.3e-07 57.8 34 67.6
THA.LOC104814599 Tarenaya hassleriana HOM05D006588 ORTHO05D008272 9.3e-07 57.8 35 65.7
unitig_699.g19309 Utricularia gibba HOM05D006588 ORTHO05D008272 9.3e-07 57.8 43 60.5
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.2e-06 57.4 35 62.9
MSTRG.10583 Avicennia marina HOM05D006588 ORTHO05D008272 1.6e-06 57.0 41 61.0
C01p10080 Brassica napus HOM05D006588 ORTHO05D008272 1.6e-06 57.0 34 67.6
BraA01t00812Z Brassica rapa HOM05D006588 ORTHO05D008272 1.6e-06 57.0 34 67.6
HanXRQChr09g0238251 Helianthus annuus HOM05D006588 ORTHO05D008272 1.6e-06 57.0 40 57.5
CANSAT56G0790 Cannabis sativa HOM05D006588 ORTHO05D008272 2.1e-06 56.6 46 54.3
CANSAT56G3648 Cannabis sativa HOM05D006588 ORTHO05D008272 2.1e-06 56.6 46 54.3
Lj4g0006334 Lotus japonicus HOM05D006588 ORTHO05D008272 2.1e-06 56.6 35 65.7
Lalb_Chr09g0331761 Lupinus albus HOM05D006588 ORTHO05D008272 2.1e-06 56.6 35 68.6
Sc15g0003870 Simmondsia chinensis HOM05D006588 ORTHO05D008272 2.1e-06 56.6 35 62.9
Ca_17389_v3 Cicer arietinum L. HOM05D006588 ORTHO05D008272 2.7e-06 56.2 35 62.9
Ciclev10008264m.g Citrus clementina HOM05D006588 ORTHO05D008272 2.7e-06 56.2 35 62.9
BolC1t00966H Brassica oleracea HOM05D006588 ORTHO05D008272 3.5e-06 55.8 34 64.7
TPR.G25442 Trifolium pratense HOM05D006588 ORTHO05D008272 3.5e-06 55.8 35 62.9
Psat7g018800 Pisum sativum HOM05D006588 ORTHO05D008272 4.6e-06 55.5 35 62.9
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 6.0e-06 55.1 34 61.8
CANSAT56G2228 Cannabis sativa HOM05D006588 ORTHO05D008272 7.9e-06 54.7 103 35.0


User provided reference genes

Program Settings