Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 6.4e-224 780.4 389 100.0
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 5.0e-51 206.1 121 88.4
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 1.6e-33 147.9 121 66.1
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 2.0e-31 141.0 119 62.2
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 9.8e-31 138.7 117 57.3
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.3e-30 138.3 119 57.1
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 1.7e-30 137.9 117 60.7
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 2.9e-30 137.1 118 58.5
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 2.9e-30 137.1 119 57.1
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 6.4e-30 136.0 124 56.5
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 1.4e-29 134.8 115 55.7
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 3.2e-29 133.7 120 55.8
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 5.4e-29 132.9 125 53.6
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 1.6e-28 131.3 121 60.3
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 2.0e-28 131.0 125 51.2
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 2.0e-28 131.0 125 57.6
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 2.7e-28 130.6 125 52.8
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 3.5e-28 130.2 117 56.4
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 3.5e-28 130.2 115 57.4
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 1.0e-27 128.6 122 53.3
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 1.7e-27 127.9 115 57.4
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.7e-27 127.9 115 56.5
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.0e-27 127.1 115 56.5
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.9e-27 126.7 115 55.7
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 5.0e-27 126.3 115 54.8
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 8.6e-27 125.6 125 52.0
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 8.6e-27 125.6 126 53.2
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 2.5e-26 124.0 122 56.6
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 3.3e-26 123.6 123 51.2
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 5.6e-26 122.9 123 50.4
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 5.6e-26 122.9 121 52.9
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 3.6e-25 120.2 117 56.4
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 1.0e-24 118.6 115 51.3
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.0e-24 118.6 120 52.5
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.0e-24 118.6 121 51.2
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.0e-24 118.6 121 50.4
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.0e-24 118.6 121 50.4
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 3.1e-24 117.1 120 52.5
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 4.0e-24 116.7 125 50.4
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 1.2e-23 115.2 125 48.8
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 1.5e-23 114.8 127 51.2
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 2.0e-23 114.4 125 46.4
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 2.0e-23 114.4 119 50.4
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 2.6e-23 114.0 126 50.0
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 1.3e-22 111.7 124 50.8
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 2.2e-22 110.9 111 52.3
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 2.9e-22 110.5 131 50.4
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 6.4e-22 109.4 126 49.2
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 8.3e-22 109.0 120 48.3
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 1.1e-21 108.6 114 48.2
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 1.4e-21 108.2 127 45.7
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 2.4e-21 107.5 132 47.7
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.2e-21 107.1 115 48.7
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.2e-21 107.1 115 48.7
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 4.1e-21 106.7 125 44.0
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 4.1e-21 106.7 119 46.2
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 7.0e-21 105.9 119 47.1
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 7.0e-21 105.9 118 50.0
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 7.0e-21 105.9 120 47.5
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 9.2e-21 105.5 115 47.0
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 9.2e-21 105.5 119 48.7
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 1.2e-20 105.1 120 48.3
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 1.2e-20 105.1 120 48.3
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 1.2e-20 105.1 120 48.3
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 7.8e-20 102.4 115 50.4
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.0e-19 102.1 139 45.3
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 1.0e-19 102.1 118 47.5
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 1.3e-19 101.7 122 45.1
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 1.7e-19 101.3 129 48.1
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.3e-19 100.9 121 50.4
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 3.9e-19 100.1 115 46.1
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 3.9e-19 100.1 115 45.2
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 6.6e-19 99.4 125 45.6
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 6.6e-19 99.4 121 49.6
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 6.6e-19 99.4 115 48.7
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 8.6e-19 99.0 115 49.6
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.5e-18 98.2 121 49.6
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 1.5e-18 98.2 119 45.4
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 3.3e-18 97.1 126 42.9
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 4.3e-18 96.7 116 44.0
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 5.6e-18 96.3 126 44.4
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 5.6e-18 96.3 115 46.1
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 2.1e-17 94.4 116 44.8
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 2.1e-17 94.4 116 44.8
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 2.8e-17 94.0 115 44.3
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 8.1e-17 92.4 125 40.0
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.1e-16 92.0 137 42.3
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.1e-16 92.0 132 40.9
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 1.4e-16 91.7 115 44.3
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.8e-16 91.3 125 43.2
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.8e-16 91.3 125 43.2
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 1.8e-16 91.3 119 43.7
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 2.3e-16 90.9 105 49.5
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 2.3e-16 90.9 115 40.9
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 3.1e-16 90.5 119 47.1
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 4.0e-16 90.1 119 41.2
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 6.8e-16 89.4 102 50.0
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 6.8e-16 89.4 102 50.0
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 1.5e-15 88.2 124 45.2
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 2.6e-15 87.4 137 41.6
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 5.8e-15 86.3 119 42.9
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 7.5e-15 85.9 130 43.1
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 9.8e-15 85.5 102 45.1
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 9.8e-15 85.5 139 39.6
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 1.7e-14 84.7 114 45.6
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 2.9e-14 84.0 102 47.1
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 2.9e-14 84.0 113 48.7
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 3.7e-14 83.6 120 41.7
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 3.7e-14 83.6 99 44.4
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.1e-13 82.0 126 39.7
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 2.4e-13 80.9 113 42.5
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 3.2e-13 80.5 117 37.6
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 3.2e-13 80.5 117 37.6
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 4.1e-13 80.1 113 44.2
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 4.1e-13 80.1 113 47.8
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 4.1e-13 80.1 114 42.1
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 7.1e-13 79.3 144 32.6
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 9.2e-13 79.0 113 44.2
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 9.2e-13 79.0 109 42.2
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 9.2e-13 79.0 120 40.8
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 1.2e-12 78.6 113 43.4
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 1.2e-12 78.6 113 43.4
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 1.2e-12 78.6 113 43.4
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 1.2e-12 78.6 102 46.1
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 3.5e-12 77.0 113 42.5
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 4.6e-12 76.6 79 57.0
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 7.8e-12 75.9 131 39.7
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.7e-11 74.7 122 40.2
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 2.3e-11 74.3 118 39.8
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 1.1e-10 72.0 123 42.3
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 1.1e-10 72.0 121 38.0
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.1e-10 72.0 52 63.5
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 1.9e-10 71.2 114 38.6
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 2.5e-10 70.9 114 40.4
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 2.5e-10 70.9 131 38.9
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 2.5e-10 70.9 136 33.1
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 3.3e-10 70.5 119 40.3
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 5.6e-10 69.7 128 39.1
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 7.3e-10 69.3 96 42.7
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 9.5e-10 68.9 124 37.1
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 9.5e-10 68.9 94 42.6
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 1.2e-09 68.6 114 42.1
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 1.6e-09 68.2 134 34.3
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 3.6e-09 67.0 114 38.6
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.6e-09 67.0 120 35.0
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.7e-09 66.6 121 33.9
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.2e-09 66.2 125 36.8
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.1e-08 65.5 64 54.7
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.1e-08 65.5 116 40.5
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.1e-08 65.5 152 32.9
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 1.1e-08 65.5 117 37.6
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.4e-08 65.1 125 36.0
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.4e-08 65.1 150 32.0
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.4e-08 65.1 60 53.3
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 2.3e-08 64.3 117 37.6
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 2.3e-08 64.3 61 49.2
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.3e-08 64.3 152 32.9
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.2e-07 62.0 118 34.7
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 2.6e-07 60.8 115 35.7
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 9.9e-07 58.9 119 32.8
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.3e-06 58.5 41 58.5
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.7e-06 58.2 136 31.6
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 2.9e-06 57.4 141 28.4


User provided reference genes

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