Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17828 Corylus avellana HOM05D000005 ORTHO05D010574 0.0e+00 1929.8 908 100.0
Cfa018268 Carpinus fangiana HOM05D000005 ORTHO05D010574 0.0e+00 1680.6 877 90.9
Haze_17818 Corylus avellana HOM05D000005 ORTHO05D010574 0.0e+00 1577.4 920 83.0
Cfa018270 Carpinus fangiana HOM05D000005 ORTHO05D010574 0.0e+00 1089.3 931 62.2
Haze_17817 Corylus avellana HOM05D000005 ORTHO05D010574 0.0e+00 1085.9 895 63.8
Cfa018269 Carpinus fangiana HOM05D000005 ORTHO05D010574 6.7e-248 861.3 647 68.9
Haze_17819 Corylus avellana HOM05D000005 ORTHO05D010574 2.4e-213 746.5 745 54.4
Haze_17731 Corylus avellana HOM05D000005 ORTHO05D010574 5.4e-173 612.5 760 47.4
QL04p027472 Quercus lobata HOM05D000005 ORTHO05D010574 8.7e-147 525.4 650 45.4
QL09p004694 Quercus lobata HOM05D000005 ORTHO05D010574 4.0e-144 516.5 936 37.5
QL04p027112 Quercus lobata HOM05D000005 ORTHO05D010574 1.5e-143 514.6 751 40.2
Haze_17813 Corylus avellana HOM05D000005 ORTHO05D010574 1.8e-131 474.6 745 40.8
QL05p082212 Quercus lobata HOM05D000005 ORTHO05D010574 3.0e-131 473.8 855 36.3
Prupe.7G065400 Prunus persica HOM05D000005 ORTHO05D000012 6.5e-126 456.1 877 34.4
Haze_17730 Corylus avellana HOM05D000005 ORTHO05D010574 9.3e-125 452.2 734 40.7
MD12G1068700 Malus domestica HOM05D000005 ORTHO05D010574 8.2e-121 439.1 912 32.8
Cfa011656 Carpinus fangiana HOM05D000005 ORTHO05D010574 3.0e-115 420.6 929 31.8
Haze_24261 Corylus avellana HOM05D000005 ORTHO05D010574 1.1e-112 412.1 1030 30.5
Cfa018271 Carpinus fangiana HOM05D000005 ORTHO05D010574 2.5e-109 401.0 568 44.4
QL09p003267 Quercus lobata HOM05D000005 ORTHO05D010574 2.2e-105 387.9 620 38.4
CANSAT01G0874 Cannabis sativa HOM05D000005 ORTHO05D000012 2.8e-89 334.3 943 29.0
Cfa008053 Carpinus fangiana HOM05D000005 ORTHO05D010574 3.7e-81 307.4 668 32.9
RcHm_v2.0_Chr1g0317981 Rosa chinensis HOM05D000005 ORTHO05D010574 6.3e-81 306.6 794 31.7
QL03p068834 Quercus lobata HOM05D000005 ORTHO05D010574 5.4e-80 303.5 685 31.5
QL04p027965 Quercus lobata HOM05D000005 ORTHO05D010574 8.9e-75 286.2 450 39.8
QL09p003167 Quercus lobata HOM05D000005 ORTHO05D010574 5.6e-69 266.9 710 29.9
QL09p004668 Quercus lobata HOM05D000005 ORTHO05D010574 9.2e-64 249.6 408 38.5
RcHm_v2.0_Chr4g0429711 Rosa chinensis HOM05D000005 ORTHO05D010574 4.3e-61 240.7 370 37.6
QL04p027745 Quercus lobata HOM05D000005 ORTHO05D010574 2.9e-57 228.0 191 56.5
QL04p027198 Quercus lobata HOM05D000005 ORTHO05D010574 3.3e-53 214.5 267 44.9
Cfa011655 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.5e-50 205.7 311 41.5
CANSAT78G1597 Cannabis sativa HOM05D000005 ORTHO05D010574 9.9e-50 203.0 417 34.1
QL04p027395 Quercus lobata HOM05D000083 ORTHO05D001732 3.8e-49 201.1 300 39.7
Cfa011658 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.1e-48 199.5 229 47.6
CiPaw.16G076400 Carya illinoinensis HOM05D000005 ORTHO05D010574 1.2e-47 196.1 382 38.2
QL04p028127 Quercus lobata HOM05D000005 ORTHO05D010574 1.0e-46 193.0 365 35.3
RcHm_v2.0_Chr6g0251631 Rosa chinensis HOM05D000005 ORTHO05D012233 1.8e-43 182.2 416 29.3
QL09p003102 Quercus lobata HOM05D000005 ORTHO05D010574 4.6e-39 167.5 225 43.6
FAN23G0394 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.0e-38 166.4 916 24.6
FvH4_1g16620 Fragaria vesca HOM05D000005 ORTHO05D012233 8.7e-38 163.3 739 24.9
RcHm_v2.0_Chr1g0342551 Rosa chinensis HOM05D000005 ORTHO05D010574 8.7e-38 163.3 862 24.1
Cfa012834 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.1e-35 156.4 155 52.3
FAN19G0622 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.8e-35 155.6 701 24.7
QL04p027572 Quercus lobata HOM05D000056 ORTHO05D000019 1.8e-35 155.6 250 38.0
Cfa011657 Carpinus fangiana HOM05D000005 ORTHO05D010574 4.0e-35 154.5 299 37.1
FAN23G1303 Fragaria x ananassa HOM05D000005 ORTHO05D012233 4.0e-35 154.5 697 24.4
FAN28G1466 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.2e-34 152.9 712 25.3
Sed0026450 Sechium edule HOM05D000005 ORTHO05D014598 3.4e-34 151.4 684 24.7
RcHm_v2.0_Chr2g0106541 Rosa chinensis HOM05D000005 ORTHO05D012233 5.8e-34 150.6 362 30.4
FAN26G2122 Fragaria x ananassa HOM05D000005 ORTHO05D012233 7.6e-34 150.2 690 26.5
RcHm_v2.0_Chr2g0106511 Rosa chinensis HOM05D000005 ORTHO05D012233 1.7e-33 149.1 992 23.6
QL04p027067 Quercus lobata HOM05D000083 ORTHO05D001732 8.4e-33 146.7 248 36.7
Cfa018274 Carpinus fangiana HOM05D000005 ORTHO05D010574 7.9e-31 140.2 84 77.4
FvH4_2g02050 Fragaria vesca HOM05D000005 ORTHO05D000012 7.9e-31 140.2 632 26.3
MELO3C022148.2 Cucumis melo HOM05D000005 ORTHO05D014598 1.0e-30 139.8 393 29.3
RcHm_v2.0_Chr2g0124621 Rosa chinensis HOM05D000005 ORTHO05D012233 1.3e-30 139.4 413 29.3
RcHm_v2.0_Chr6g0251641 Rosa chinensis HOM05D000005 ORTHO05D000012 1.8e-30 139.0 409 27.6
ClCG08G001380 Citrullus lanatus HOM05D000005 ORTHO05D014598 2.3e-30 138.7 695 22.7
CANSAT78G2183 Cannabis sativa HOM05D000005 ORTHO05D010574 3.0e-30 138.3 397 27.7
FAN15G3532 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.1e-29 136.3 632 26.4
FAN06G4743 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.9e-29 135.6 603 24.7
Prupe.8G005400 Prunus persica HOM05D000005 ORTHO05D000012 4.3e-29 134.4 644 23.8
FAN26G1463 Fragaria x ananassa HOM05D000005 ORTHO05D012233 7.4e-29 133.7 376 29.0
FAN19G0289 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.3e-28 132.9 380 28.9
MD05G1002200 Malus domestica HOM05D000005 ORTHO05D010574 2.1e-28 132.1 396 27.0
MELO3C025516.2 Cucumis melo HOM05D000005 ORTHO05D014598 3.7e-28 131.3 702 23.2
QL04p028099 Quercus lobata HOM05D000005 ORTHO05D010574 6.9e-27 127.1 463 26.6
RcHm_v2.0_Chr7g0223661 Rosa chinensis HOM05D000005 ORTHO05D000012 1.2e-26 126.3 658 25.7
FAN28G2233 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.5e-26 125.9 384 28.9
RcHm_v2.0_Chr4g0429701 Rosa chinensis HOM05D000005 ORTHO05D000012 5.8e-26 124.0 680 24.3
FvH4_5g38760 Fragaria vesca HOM05D000005 ORTHO05D012870 2.1e-23 115.5 709 23.4
QL03p063704 Quercus lobata HOM05D000005 ORTHO05D010574 8.7e-22 110.2 197 31.5
RcHm_v2.0_Chr6g0272741 Rosa chinensis HOM05D000005 ORTHO05D000012 1.5e-21 109.4 387 24.8
FAN28G0065 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.9e-21 109.0 387 28.7
QL09p004704 Quercus lobata HOM05D000005 ORTHO05D000012 1.2e-18 99.8 375 25.6
FAN04G2194 Fragaria x ananassa HOM05D000005 ORTHO05D012870 2.6e-18 98.6 426 24.2
RcHm_v2.0_Chr7g0240641 Rosa chinensis HOM05D000005 ORTHO05D012870 2.6e-18 98.6 415 24.1
FAN18G3744 Fragaria x ananassa HOM05D000005 ORTHO05D012870 5.8e-18 97.4 423 24.6
MD05G1002400 Malus domestica HOM05D000005 ORTHO05D012870 1.7e-17 95.9 145 35.9
Sed0009572 Sechium edule HOM05D000005 ORTHO05D014598 2.9e-17 95.1 135 34.1
Prupe.7G065500 Prunus persica HOM05D000005 ORTHO05D010574 3.8e-17 94.7 366 27.9
ClCG08G001360 Citrullus lanatus HOM05D000005 ORTHO05D010574 8.4e-17 93.6 133 33.1
FAN13G2383 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.4e-17 93.6 417 24.5
CsaV3_5G039740 Cucumis sativus L. HOM05D000005 ORTHO05D014598 4.2e-16 91.3 149 31.5
ClCG08G001330 Citrullus lanatus HOM05D000005 ORTHO05D010574 5.5e-16 90.9 159 32.1
MELO3C022150.2 Cucumis melo HOM05D000005 ORTHO05D014598 9.3e-16 90.1 169 33.1
FAN04G1101 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.2e-15 89.7 491 23.6
FAN18G3157 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.7e-15 88.6 416 26.0
QL05p082177 Quercus lobata HOM05D000005 ORTHO05D000012 3.5e-15 88.2 366 23.8
MD17G1192900 Malus domestica HOM05D000005 ORTHO05D000012 6.0e-15 87.4 148 29.7
CsaV3_5G039730 Cucumis sativus L. HOM05D000005 ORTHO05D014598 1.3e-14 86.3 177 28.8
FvH4_5g38680 Fragaria vesca HOM05D000005 ORTHO05D000012 5.1e-14 84.3 568 22.5
QL04p027649 Quercus lobata HOM05D000005 ORTHO05D010574 5.1e-14 84.3 373 24.9
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 6.7e-14 84.0 400 26.8
Dinv27194 Davidia involucrata HOM05D009617 ORTHO05D010313 1.1e-13 83.2 375 23.7
FvH4_5g38500 Fragaria vesca HOM05D000005 ORTHO05D012870 3.3e-13 81.6 143 32.9
FvH4_5g38561 Fragaria vesca HOM05D000005 ORTHO05D000012 4.3e-13 81.3 413 25.2
QL03p063806 Quercus lobata HOM05D000005 ORTHO05D000012 1.6e-12 79.3 172 27.3
ClCG08G001340 Citrullus lanatus HOM05D000005 ORTHO05D014598 2.2e-12 79.0 445 24.0
Sed0011506 Sechium edule HOM05D000005 ORTHO05D019022 2.8e-12 78.6 540 22.4
MELO3C022152.2 Cucumis melo HOM05D000005 ORTHO05D014598 4.8e-12 77.8 124 33.9
QL04p026662 Quercus lobata HOM05D000005 ORTHO05D000012 4.8e-12 77.8 284 25.0
QL04p027378 Quercus lobata HOM05D000005 ORTHO05D000012 4.8e-12 77.8 284 25.0
QL09p003516 Quercus lobata HOM05D000005 ORTHO05D000012 1.8e-11 75.9 205 25.4
Eucgr.F01325 Eucalyptus grandis HOM05D000005 ORTHO05D000012 3.1e-11 75.1 166 31.9
Prupe.8G005500 Prunus persica HOM05D000005 ORTHO05D000012 4.1e-11 74.7 151 30.5
QL09p003532 Quercus lobata HOM05D000005 ORTHO05D000012 5.3e-11 74.3 190 24.7
Eucgr.F01323 Eucalyptus grandis HOM05D000005 ORTHO05D000012 6.9e-11 73.9 165 31.5
RcHm_v2.0_Chr1g0329001 Rosa chinensis HOM05D000005 ORTHO05D000012 6.9e-11 73.9 178 27.5
CiPaw.16G015500 Carya illinoinensis HOM05D000005 ORTHO05D010574 9.0e-11 73.6 149 32.9
Manes.02G199800 Manihot esculenta HOM05D000005 ORTHO05D000012 9.0e-11 73.6 157 29.3
Sed0004955 Sechium edule HOM05D000005 ORTHO05D019022 2.0e-10 72.4 421 22.1
Eucgr.F01288 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.6e-10 72.0 155 32.9
QL09p003562 Quercus lobata HOM05D000005 ORTHO05D000012 3.4e-10 71.6 162 29.0
RcHm_v2.0_Chr1g0322491 Rosa chinensis HOM05D000005 ORTHO05D000012 4.5e-10 71.2 178 27.0
RcHm_v2.0_Chr1g0322941 Rosa chinensis HOM05D000005 ORTHO05D000012 4.5e-10 71.2 171 27.5
FAN04G0285 Fragaria x ananassa HOM05D000005 ORTHO05D012870 7.6e-10 70.5 380 22.4
ClCG08G001350 Citrullus lanatus HOM05D000005 ORTHO05D014598 1.0e-09 70.1 158 31.6
CANSAT78G1585 Cannabis sativa HOM05D000005 ORTHO05D000012 1.7e-09 69.3 165 32.1
FAN19G2490 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.7e-09 69.3 151 28.5
RcHm_v2.0_Chr1g0321301 Rosa chinensis HOM05D000005 ORTHO05D001748 1.7e-09 69.3 173 27.2
FvH4_1g22390 Fragaria vesca HOM05D000005 ORTHO05D000294 2.2e-09 68.9 149 28.9
MD10G1006400 Malus domestica HOM05D000005 ORTHO05D000012 2.2e-09 68.9 151 28.5
RcHm_v2.0_Chr1g0322421 Rosa chinensis HOM05D000005 ORTHO05D001748 2.2e-09 68.9 178 27.0
RcHm_v2.0_Chr1g0322651 Rosa chinensis HOM05D000005 ORTHO05D000012 2.2e-09 68.9 178 26.4
RcHm_v2.0_Chr1g0328941 Rosa chinensis HOM05D000005 ORTHO05D001748 2.2e-09 68.9 178 26.4
QL04p027246 Quercus lobata HOM05D000005 ORTHO05D000012 2.9e-09 68.6 150 30.7
RcHm_v2.0_Chr1g0319431 Rosa chinensis HOM05D000005 ORTHO05D001748 2.9e-09 68.6 162 28.4
ClCG08G000610 Citrullus lanatus HOM05D000005 ORTHO05D014598 5.0e-09 67.8 270 26.3
QL04p027735 Quercus lobata HOM05D000005 ORTHO05D000012 5.0e-09 67.8 288 25.0
RcHm_v2.0_Chr1g0323221 Rosa chinensis HOM05D000005 ORTHO05D000012 5.0e-09 67.8 177 27.7
RcHm_v2.0_Chr6g0250551 Rosa chinensis HOM05D000005 ORTHO05D000012 5.0e-09 67.8 189 24.3
RcHm_v2.0_Chr6g0250621 Rosa chinensis HOM05D000005 ORTHO05D000012 5.0e-09 67.8 185 24.3
RcHm_v2.0_Chr1g0322521 Rosa chinensis HOM05D000005 ORTHO05D001748 6.5e-09 67.4 177 26.0
RcHm_v2.0_Chr1g0322781 Rosa chinensis HOM05D000005 ORTHO05D000012 6.5e-09 67.4 183 24.6
MD10G1007300 Malus domestica HOM05D000005 ORTHO05D000012 8.5e-09 67.0 166 27.7
RcHm_v2.0_Chr1g0323161 Rosa chinensis HOM05D000005 ORTHO05D000012 8.5e-09 67.0 178 27.0
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 1.1e-08 66.6 186 27.4
Prupe.8G005200 Prunus persica HOM05D000005 ORTHO05D000012 1.1e-08 66.6 167 29.3
QL03p008616 Quercus lobata HOM05D000005 ORTHO05D001748 1.1e-08 66.6 164 28.7
FAN05G0011 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.4e-08 66.2 153 30.1
RcHm_v2.0_Chr1g0322701 Rosa chinensis HOM05D000005 ORTHO05D001748 2.5e-08 65.5 159 28.9
RcHm_v2.0_Chr1g0323501 Rosa chinensis HOM05D000005 ORTHO05D001748 2.5e-08 65.5 185 25.4
RcHm_v2.0_Chr1g0322041 Rosa chinensis HOM05D000005 ORTHO05D000012 3.2e-08 65.1 170 24.7
RcHm_v2.0_Chr6g0250981 Rosa chinensis HOM05D000005 ORTHO05D000012 3.2e-08 65.1 144 29.2
Duzib268G0402 Durio zibethinus HOM05D000005 ORTHO05D000012 4.2e-08 64.7 200 27.5
RcHm_v2.0_Chr6g0250771 Rosa chinensis HOM05D000005 ORTHO05D000012 7.2e-08 63.9 144 30.6
RcHm_v2.0_Chr6g0250871 Rosa chinensis HOM05D000005 ORTHO05D000012 7.2e-08 63.9 200 26.0
RcHm_v2.0_Chr5g0055671 Rosa chinensis HOM05D000005 ORTHO05D000012 9.4e-08 63.5 180 25.0
QL09p001663 Quercus lobata HOM05D000005 ORTHO05D000012 1.2e-07 63.2 165 33.9
Potri.019G069200 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.6e-07 62.8 172 30.2
Prupe.8G046500 Prunus persica HOM05D000005 ORTHO05D000012 1.6e-07 62.8 192 28.6
MD05G1020100 Malus domestica HOM05D000005 ORTHO05D000012 2.1e-07 62.4 188 27.7
QL09p051711 Quercus lobata HOM05D000254 ORTHO05D000165 2.1e-07 62.4 148 31.8
Thecc.06G019400 Theobroma cacao HOM05D000005 ORTHO05D000012 2.1e-07 62.4 156 28.8
FvH4_1g16621 Fragaria vesca HOM05D000005 ORTHO05D012233 2.7e-07 62.0 85 43.5
Prupe.8G005600 Prunus persica HOM05D000005 ORTHO05D000012 2.7e-07 62.0 148 29.1
FAN04G1784 Fragaria x ananassa HOM05D000005 ORTHO05D012870 3.6e-07 61.6 149 28.2
Gohir.D11G312054 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.6e-07 61.6 230 25.7
MD07G1123900 Malus domestica HOM05D000005 ORTHO05D000012 3.6e-07 61.6 157 31.2
QL11p046259 Quercus lobata HOM05D000005 ORTHO05D000012 3.6e-07 61.6 194 24.2
Sed0017103 Sechium edule HOM05D000005 ORTHO05D019022 3.6e-07 61.6 313 22.4
Duzib268G0652 Durio zibethinus HOM05D000005 ORTHO05D000012 4.6e-07 61.2 182 23.6
FAN04G1890 Fragaria x ananassa HOM05D000005 ORTHO05D012870 4.6e-07 61.2 150 27.3
QL03p009455 Quercus lobata HOM05D054300 ORTHO05D010574 4.6e-07 61.2 78 47.4
QL05p005294 Quercus lobata HOM05D000005 ORTHO05D013544 4.6e-07 61.2 154 28.6
RcHm_v2.0_Chr1g0323411 Rosa chinensis HOM05D000005 ORTHO05D001748 4.6e-07 61.2 172 27.3
MD10G1006800 Malus domestica HOM05D000005 ORTHO05D000012 6.1e-07 60.8 166 25.9
Gohir.D11G297400 Gossypium hirsutum HOM05D000005 ORTHO05D000012 7.9e-07 60.5 177 26.6
Gohir.D11G312500 Gossypium hirsutum HOM05D000005 ORTHO05D000012 7.9e-07 60.5 224 25.4
Gorai.007G322300 Gossypium raimondii HOM05D000005 ORTHO05D000012 7.9e-07 60.5 177 27.1
QL09p003491 Quercus lobata HOM05D000005 ORTHO05D000012 7.9e-07 60.5 166 27.7
TWI38G0566 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 7.9e-07 60.5 170 28.2
QL10p029742 Quercus lobata HOM05D000005 ORTHO05D000012 1.4e-06 59.7 201 25.9
Thecc.06G019100 Theobroma cacao HOM05D000005 ORTHO05D000012 1.4e-06 59.7 175 27.4
Thecc.06G018500 Theobroma cacao HOM05D000005 ORTHO05D000012 1.8e-06 59.3 186 25.8
RcHm_v2.0_Chr6g0250931 Rosa chinensis HOM05D000005 ORTHO05D000012 2.3e-06 58.9 189 23.3
CiPaw.15G040500 Carya illinoinensis HOM05D000005 ORTHO05D001748 3.0e-06 58.5 146 26.7
arahy.Tifrunner.gnm1.ann1.XFK2HS Arachis hypogaea HOM05D000005 ORTHO05D000012 3.9e-06 58.2 175 27.4
QL05p082235 Quercus lobata HOM05D054300 ORTHO05D010574 3.9e-06 58.2 123 39.0
Cpa.g.sc27.17 Carica papaya HOM05D000005 ORTHO05D000012 5.1e-06 57.8 162 27.2
Ciclev10023653m.g Citrus clementina HOM05D000005 ORTHO05D000012 5.1e-06 57.8 162 25.3
QL04p027557 Quercus lobata HOM05D000005 ORTHO05D000012 6.7e-06 57.4 149 30.2


User provided reference genes

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